Wall clock time and date at job start Mon Mar 30 2020 02:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30551 * 1 3 3 Si 1.86800 * 119.99835 * 2 1 4 4 H 1.48498 * 109.47186 * 239.99980 * 3 2 1 5 5 H 1.48509 * 109.47108 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47292 * 120.00107 * 3 2 1 7 7 C 1.40633 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00233 * 179.97438 * 7 2 1 9 9 C 1.38804 * 120.00074 * 0.02562 * 7 2 1 10 10 C 1.37979 * 126.24894 * 0.03863 * 9 7 2 11 11 C 1.45980 * 110.37710 * 179.97438 * 10 9 7 12 12 C 1.40666 * 131.48395 * 179.97438 * 11 10 9 13 13 C 1.37578 * 119.86249 * 180.02562 * 12 11 10 14 14 C 1.38709 * 120.38725 * 359.97438 * 13 12 11 15 15 Cl 1.73603 * 119.87977 * 179.97438 * 14 13 12 16 16 C 1.38763 * 120.24465 * 0.02562 * 14 13 12 17 17 C 1.37282 * 120.12598 * 0.04772 * 16 14 13 18 18 C 1.50934 * 132.72594 * 180.02562 * 17 16 14 19 19 H 0.96994 * 120.00183 * 0.02562 * 1 2 3 20 20 H 1.08001 * 124.80666 * 359.97179 * 10 9 7 21 21 H 1.08001 * 120.06771 * 359.97438 * 12 11 10 22 22 H 1.08004 * 119.80557 * 180.02562 * 13 12 11 23 23 H 1.07997 * 119.96714 * 180.02562 * 16 14 13 24 24 H 1.09002 * 110.21371 * 60.84988 * 18 17 16 25 25 H 1.08999 * 110.21486 * 299.01941 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2395 1.6178 0.0000 4 1 3.0932 1.6965 -1.2125 5 1 1.2744 2.7465 -0.0006 6 1 3.0932 1.6965 1.2125 7 6 2.0087 -1.2179 0.0005 8 1 3.0888 -1.2179 0.0001 9 6 1.3148 -2.4200 0.0005 10 6 -0.0568 -2.5703 -0.0007 11 6 -0.4130 -3.9859 -0.0009 12 6 -1.6623 -4.6324 -0.0015 13 6 -1.7224 -6.0069 -0.0010 14 6 -0.5577 -6.7601 -0.0004 15 17 -0.6489 -8.4937 0.0009 16 6 0.6802 -6.1331 0.0002 17 6 0.7583 -4.7625 0.0012 18 6 1.9235 -3.8031 0.0016 19 1 -0.4850 0.8400 -0.0004 20 1 -0.7662 -1.7559 -0.0014 21 1 -2.5725 -4.0510 -0.0015 22 1 -2.6821 -6.5023 -0.0018 23 1 1.5842 -6.7239 0.0002 24 1 2.5307 -3.9477 -0.8921 25 1 2.5300 -3.9475 0.8957 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260597708.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:45 Heat of formation + Delta-G solvation = 2.766170 kcal Electronic energy + Delta-G solvation = -11867.820793 eV Core-core repulsion = 9642.774858 eV Total energy + Delta-G solvation = -2225.045934 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 220.035 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.52799 -37.69165 -36.65728 -34.78186 -31.90109 -30.45758 -27.63245 -26.91458 -22.95628 -21.68497 -20.84275 -18.30934 -17.31744 -16.92658 -15.86210 -15.83985 -15.16845 -14.61089 -14.28570 -13.74948 -13.63368 -13.36059 -13.01599 -12.79558 -12.12552 -12.04639 -11.92788 -11.82968 -11.58777 -11.46603 -11.32461 -10.18190 -9.58406 -8.83884 -8.59909 -6.36041 0.29488 0.64556 1.39371 1.39467 1.42171 1.53623 1.99297 2.14798 2.92309 3.47340 3.87671 4.15708 4.37084 4.47773 4.71703 4.73939 4.88467 4.95177 5.01556 5.22294 5.40473 5.47378 5.66962 5.83259 5.95507 6.26745 6.37206 6.72250 6.97573 7.04634 8.16681 Molecular weight = 220.03amu Principal moments of inertia in cm(-1) A = 0.082423 B = 0.006297 C = 0.005869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 339.630177 B = 4445.483879 C = 4769.924154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.015 3.985 3 Si 1.002 2.998 4 H -0.254 1.254 5 H -0.269 1.269 6 H -0.254 1.254 7 C -0.423 4.423 8 H 0.097 0.903 9 C 0.037 3.963 10 C -0.388 4.388 11 C -0.001 4.001 12 C -0.186 4.186 13 C -0.082 4.082 14 C -0.119 4.119 15 Cl -0.083 7.083 16 C -0.069 4.069 17 C -0.181 4.181 18 C -0.046 4.046 19 H 0.292 0.708 20 H 0.129 0.871 21 H 0.117 0.883 22 H 0.140 0.860 23 H 0.134 0.866 24 H 0.089 0.911 25 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.644 -4.169 0.001 4.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.204 4.204 3 Si 0.821 3.179 4 H -0.178 1.178 5 H -0.193 1.193 6 H -0.178 1.178 7 C -0.449 4.449 8 H 0.115 0.885 9 C 0.034 3.966 10 C -0.410 4.410 11 C -0.002 4.002 12 C -0.205 4.205 13 C -0.101 4.101 14 C -0.145 4.145 15 Cl -0.055 7.055 16 C -0.088 4.088 17 C -0.181 4.181 18 C -0.082 4.082 19 H 0.104 0.896 20 H 0.146 0.854 21 H 0.135 0.865 22 H 0.158 0.842 23 H 0.152 0.848 24 H 0.107 0.893 25 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.438 -4.169 0.001 4.410 hybrid contribution -0.117 0.502 -0.001 0.515 sum 1.321 -3.668 0.000 3.898 Atomic orbital electron populations 1.69722 1.09667 1.30761 1.30773 1.27302 0.95685 1.05524 0.91865 0.84936 0.78421 0.74029 0.80523 1.17798 1.19341 1.17785 1.19551 0.95897 0.90514 1.38956 0.88501 1.19933 0.93979 0.92574 0.90106 1.22590 0.96622 0.91759 1.30000 1.20486 0.93203 0.95362 0.91118 1.20802 0.96483 0.93844 1.09375 1.20770 0.97401 0.92749 0.99161 1.20429 0.94606 0.83407 1.16077 1.98271 1.98719 1.10812 1.97668 1.20047 0.96599 0.92395 0.99728 1.20565 0.96550 0.93038 1.07976 1.19747 0.95375 0.91284 1.01795 0.89639 0.85355 0.86502 0.84208 0.84816 0.89266 0.89260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.38 10.18 21.95 0.22 -39.16 15 2 C 0.01 0.69 5.51 85.47 0.47 1.16 15 3 Si 1.00 34.46 29.57 68.60 2.03 36.49 15 4 H -0.25 -8.37 7.11 99.48 0.71 -7.67 15 5 H -0.27 -8.91 7.11 99.48 0.71 -8.20 15 6 H -0.25 -8.37 7.11 99.48 0.71 -7.66 15 7 C -0.42 -20.83 9.36 22.99 0.22 -20.61 15 8 H 0.10 4.28 7.86 -2.91 -0.02 4.26 15 9 C 0.04 1.92 6.07 -19.66 -0.12 1.80 15 10 C -0.39 -21.23 9.85 24.22 0.24 -20.99 15 11 C 0.00 -0.06 6.20 -20.12 -0.12 -0.18 15 12 C -0.19 -8.13 10.13 22.71 0.23 -7.90 15 13 C -0.08 -3.11 9.79 22.23 0.22 -2.90 15 14 C -0.12 -4.41 6.34 22.51 0.14 -4.27 15 15 Cl -0.08 -2.56 28.95 -2.72 -0.08 -2.64 15 16 C -0.07 -2.70 9.80 22.17 0.22 -2.48 15 17 C -0.18 -8.13 6.35 -19.46 -0.12 -8.25 15 18 C -0.05 -2.02 6.69 29.31 0.20 -1.82 15 19 H 0.29 13.09 8.29 -92.71 -0.77 12.32 15 20 H 0.13 7.51 5.47 -2.91 -0.02 7.50 15 21 H 0.12 4.80 8.06 -2.91 -0.02 4.78 15 22 H 0.14 4.41 8.06 -2.91 -0.02 4.38 15 23 H 0.13 4.48 8.06 -2.91 -0.02 4.46 15 24 H 0.09 3.59 8.14 -2.39 -0.02 3.57 15 25 H 0.09 3.59 8.14 -2.39 -0.02 3.57 15 Total: -1.00 -55.38 238.18 4.94 -50.44 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 1.20 Total: 21.30 kcal Atomic # 6 Polarization: -68.00 SS G_CDS: 1.56 Total: -66.44 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.22 Total: -39.16 kcal Atomic # 14 Polarization: 34.46 SS G_CDS: 2.03 Total: 36.49 kcal Atomic # 17 Polarization: -2.56 SS G_CDS: -0.08 Total: -2.64 kcal Total: -55.38 4.94 -50.44 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260597708.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.206 kcal (2) G-P(sol) polarization free energy of solvation -55.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds