Wall clock time and date at job start Mon Mar 30 2020 02:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86805 * 119.99937 * 2 1 4 4 H 1.48498 * 109.47099 * 269.99864 * 3 2 1 5 5 H 1.48501 * 109.47002 * 30.00231 * 3 2 1 6 6 H 1.48498 * 109.47205 * 149.99797 * 3 2 1 7 7 C 1.38631 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00104 * 0.02562 * 7 2 1 9 9 O 1.34930 * 120.00107 * 179.97438 * 7 2 1 10 10 C 1.42907 * 116.99916 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.29742 * 30.26243 * 10 9 7 12 12 C 1.52589 * 109.38515 * 270.52606 * 10 9 7 13 13 C 1.52587 * 110.64209 * 169.85732 * 12 10 9 14 14 C 1.53036 * 109.98462 * 69.98781 * 13 12 10 15 15 S 1.81668 * 108.99873 * 296.35087 * 14 13 12 16 16 O 1.42097 * 108.66427 * 168.63105 * 15 14 13 17 17 O 1.42102 * 108.66490 * 299.87458 * 15 14 13 18 18 C 1.53040 * 109.38253 * 150.00300 * 10 9 7 19 19 H 0.97005 * 120.00503 * 359.97438 * 1 2 3 20 20 H 1.09006 * 109.24438 * 49.55621 * 12 10 9 21 21 H 1.09000 * 109.24609 * 290.16023 * 12 10 9 22 22 H 1.09002 * 109.38626 * 309.82827 * 13 12 10 23 23 H 1.09005 * 109.38240 * 190.14623 * 13 12 10 24 24 H 1.09002 * 109.55030 * 56.20875 * 14 13 12 25 25 H 1.09006 * 109.54664 * 176.39953 * 14 13 12 26 26 H 1.08997 * 109.54734 * 63.94826 * 18 10 9 27 27 H 1.08994 * 109.62873 * 303.70712 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4472 2.6527 0.7001 6 1 3.5473 1.4403 0.7001 7 6 2.0090 -1.2006 0.0005 8 1 1.4690 -2.1360 0.0005 9 8 3.3583 -1.2005 0.0000 10 6 4.0070 -2.4738 0.0000 11 1 3.3787 -3.1983 -0.5180 12 6 4.2258 -2.9308 1.4394 13 6 4.6844 -4.3856 1.4781 14 6 6.1097 -4.4993 0.9326 15 16 6.1152 -4.0046 -0.8154 16 8 7.4625 -3.8570 -1.2420 17 8 5.2486 -4.8702 -1.5358 18 6 5.3514 -2.3589 -0.7223 19 1 -0.4851 0.8400 0.0004 20 1 3.2918 -2.8337 1.9930 21 1 4.9852 -2.3022 1.9044 22 1 4.0144 -4.9925 0.8691 23 1 4.6610 -4.7450 2.5069 24 1 6.7706 -3.8435 1.4994 25 1 6.4535 -5.5298 1.0226 26 1 6.0054 -1.6839 -0.1703 27 1 5.1941 -1.9723 -1.7291 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260599543.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:38 Heat of formation + Delta-G solvation = -111.275843 kcal Electronic energy + Delta-G solvation = -13610.252746 eV Core-core repulsion = 11074.996365 eV Total energy + Delta-G solvation = -2535.256381 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.060 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.00701 -36.83814 -35.93508 -34.99618 -32.07266 -30.60430 -27.44214 -24.65702 -22.69890 -20.56309 -18.80905 -17.82409 -16.85432 -16.11662 -15.65778 -15.22646 -14.80890 -14.51049 -13.89188 -13.34682 -12.95824 -12.53918 -12.31390 -12.11035 -11.95307 -11.92384 -11.28644 -11.20349 -11.10541 -10.81365 -10.49747 -10.32258 -10.00019 -9.73558 -9.37559 -8.29963 -6.08886 -3.78210 0.11763 2.73502 3.35065 3.38844 3.52947 3.72603 4.00095 4.47130 4.57964 4.65203 4.88126 4.93649 5.13274 5.20513 5.31653 5.49524 5.61836 5.75410 5.92958 6.05069 6.08173 6.45187 6.59188 7.80959 8.25832 9.29880 9.79450 11.03240 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.048244 B = 0.008680 C = 0.008257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.243357 B = 3225.013401 C = 3390.060185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.047 3.953 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.366 4.366 8 H 0.084 0.916 9 O -0.314 6.314 10 C 0.123 3.877 11 H 0.070 0.930 12 C -0.164 4.164 13 C -0.107 4.107 14 C -0.602 4.602 15 S 2.419 3.581 16 O -0.951 6.951 17 O -0.938 6.938 18 C -0.599 4.599 19 H 0.271 0.729 20 H 0.094 0.906 21 H 0.072 0.928 22 H 0.083 0.917 23 H 0.084 0.916 24 H 0.131 0.869 25 H 0.130 0.870 26 H 0.134 0.866 27 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.533 -7.018 3.134 13.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.151 4.151 3 Si 0.732 3.268 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.189 1.189 7 C -0.444 4.444 8 H 0.102 0.898 9 O -0.229 6.229 10 C 0.063 3.937 11 H 0.088 0.912 12 C -0.202 4.202 13 C -0.146 4.146 14 C -0.732 4.732 15 S 2.601 3.399 16 O -0.948 6.948 17 O -0.935 6.935 18 C -0.729 4.729 19 H 0.080 0.920 20 H 0.112 0.888 21 H 0.091 0.909 22 H 0.102 0.898 23 H 0.103 0.897 24 H 0.150 0.850 25 H 0.148 0.852 26 H 0.152 0.848 27 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 11.838 -7.206 2.385 14.062 hybrid contribution 0.022 1.113 0.702 1.316 sum 11.859 -6.093 3.087 13.686 Atomic orbital electron populations 1.69677 1.05329 1.27370 1.52914 1.24307 0.94844 0.98234 0.97699 0.86201 0.79965 0.82347 0.78287 1.20663 1.21612 1.18936 1.20476 0.78118 0.95379 1.50412 0.89817 1.85323 1.20773 1.23623 1.93187 1.21204 0.89684 0.89981 0.92879 0.91212 1.22326 1.04159 0.94181 0.99531 1.21258 0.91401 0.98474 1.03427 1.30229 1.06266 1.11971 1.24711 1.07947 0.75338 0.78339 0.78237 1.93568 1.34635 1.86549 1.80070 1.93582 1.67606 1.63381 1.68945 1.30505 1.09258 1.22063 1.11042 0.91955 0.88756 0.90925 0.89795 0.89718 0.85045 0.85210 0.84796 0.84347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.39 13.96 55.48 0.77 -26.62 15 2 C 0.05 1.36 5.49 -17.52 -0.10 1.26 15 3 Si 0.90 22.44 28.62 -169.99 -4.86 17.58 15 4 H -0.28 -6.90 7.11 56.52 0.40 -6.49 15 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 15 6 H -0.26 -6.47 7.11 56.52 0.40 -6.07 15 7 C -0.37 -10.25 10.19 30.88 0.31 -9.93 15 8 H 0.08 2.43 7.88 -52.48 -0.41 2.02 15 9 O -0.31 -7.68 8.25 -16.51 -0.14 -7.82 15 10 C 0.12 2.28 2.48 -26.92 -0.07 2.22 15 11 H 0.07 1.33 7.68 -51.93 -0.40 0.93 15 12 C -0.16 -2.47 5.23 -27.15 -0.14 -2.62 15 13 C -0.11 -1.24 5.73 -26.92 -0.15 -1.39 15 14 C -0.60 -5.95 6.35 37.18 0.24 -5.72 15 15 S 2.42 31.76 5.30 -107.50 -0.57 31.19 15 16 O -0.95 -14.76 18.10 -57.82 -1.05 -15.81 15 17 O -0.94 -15.51 17.96 -57.82 -1.04 -16.54 15 18 C -0.60 -8.86 6.00 37.18 0.22 -8.63 15 19 H 0.27 7.64 8.31 -40.82 -0.34 7.30 15 20 H 0.09 1.58 8.10 -51.93 -0.42 1.15 15 21 H 0.07 0.98 8.09 -51.93 -0.42 0.56 15 22 H 0.08 0.99 8.02 -51.93 -0.42 0.57 15 23 H 0.08 0.81 8.14 -51.93 -0.42 0.39 15 24 H 0.13 1.03 8.14 -51.93 -0.42 0.61 15 25 H 0.13 1.01 8.14 -51.92 -0.42 0.59 15 26 H 0.13 1.70 8.14 -51.93 -0.42 1.27 15 27 H 0.14 2.04 8.14 -51.93 -0.42 1.62 15 LS Contribution 243.76 15.07 3.67 3.67 Total: -1.00 -35.12 243.76 -6.21 -41.33 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: -3.32 Total: -2.18 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: 0.31 Total: -24.81 kcal Atomic # 7 Polarization: -27.39 SS G_CDS: 0.77 Total: -26.62 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -2.22 Total: -40.16 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.86 Total: 17.58 kcal Atomic # 16 Polarization: 31.76 SS G_CDS: -0.57 Total: 31.19 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -35.12 -6.21 -41.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260599543.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.942 kcal (2) G-P(sol) polarization free energy of solvation -35.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds