Wall clock time and date at job start Mon Mar 30 2020 02:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47131 * 2 1 4 4 H 1.09001 * 109.47422 * 305.00323 * 3 2 1 5 5 N 1.46907 * 109.46926 * 65.00145 * 3 2 1 6 6 C 1.50691 * 109.47390 * 184.99906 * 3 2 1 7 7 C 1.38254 * 120.00360 * 280.02472 * 6 3 2 8 8 C 1.38216 * 120.00528 * 179.97438 * 7 6 3 9 9 C 1.38261 * 119.99683 * 359.75182 * 8 7 6 10 10 C 1.38212 * 119.99716 * 0.50410 * 9 8 7 11 11 C 1.50700 * 119.99804 * 179.77075 * 10 9 8 12 12 C 1.50706 * 109.47062 * 269.72032 * 11 10 9 13 13 H 1.07998 * 119.99503 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00434 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99826 * 359.72891 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46758 * 269.72576 * 16 14 12 18 18 H 1.48499 * 109.47026 * 29.72423 * 16 14 12 19 19 H 1.48496 * 109.47474 * 149.72459 * 16 14 12 20 20 C 1.38215 * 120.00217 * 99.99886 * 6 3 2 21 21 H 1.09003 * 109.46817 * 59.99733 * 1 2 3 22 22 H 1.08996 * 109.46757 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47079 * 299.99807 * 1 2 3 24 24 H 1.09001 * 109.47079 * 240.00193 * 2 1 3 25 25 H 1.08992 * 109.47312 * 120.00142 * 2 1 3 26 26 H 1.00896 * 111.00177 * 59.99937 * 5 3 2 27 27 H 1.00896 * 110.99828 * 183.95793 * 5 3 2 28 28 H 1.08002 * 119.99952 * 0.02562 * 7 6 3 29 29 H 1.07998 * 120.00339 * 180.02562 * 8 7 6 30 30 H 1.07997 * 120.00049 * 180.27351 * 9 8 7 31 31 H 1.09004 * 109.47406 * 149.72738 * 11 10 9 32 32 H 1.08993 * 109.47274 * 29.72364 * 11 10 9 33 33 H 0.97000 * 120.00236 * 0.27947 * 15 14 12 34 34 H 1.08009 * 119.99624 * 0.02562 * 20 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6514 2.0992 1.2553 6 6 3.5419 1.4443 -0.1238 7 6 4.3275 1.2026 0.9879 8 6 5.7050 1.2038 0.8742 9 6 6.2972 1.4417 -0.3523 10 6 5.5119 1.6885 -1.4625 11 6 6.1575 1.9529 -2.7983 12 6 6.3950 3.4326 -2.9574 13 1 6.1076 4.1133 -2.1698 14 6 6.9801 3.9172 -4.1079 15 7 7.3359 3.0876 -5.0644 16 14 7.2752 5.7512 -4.3048 17 1 6.0913 6.3768 -4.9469 18 1 7.4955 6.3632 -2.9699 19 1 8.4732 5.9715 -5.1541 20 6 4.1341 1.6872 -1.3488 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 2.0423 1.6179 2.0513 27 1 1.9204 3.0717 1.2529 28 1 3.8649 1.0120 1.9450 29 1 6.3187 1.0146 1.7425 30 1 7.3734 1.4382 -0.4420 31 1 5.5010 1.6027 -3.5949 32 1 7.1091 1.4242 -2.8530 33 1 7.1830 2.1352 -4.9621 34 1 3.5203 1.8760 -2.2173 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260704868.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:07 Heat of formation + Delta-G solvation = -25.788829 kcal Electronic energy + Delta-G solvation = -14301.833147 eV Core-core repulsion = 12004.224662 eV Total energy + Delta-G solvation = -2297.608486 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.64175 -37.49847 -35.66782 -32.93255 -32.13738 -31.37602 -28.52940 -26.28712 -25.28188 -23.10606 -22.71356 -20.74860 -18.99225 -17.60043 -17.10884 -16.25895 -15.98954 -15.68376 -15.49797 -15.25647 -14.59341 -14.20305 -14.03590 -13.56322 -13.43100 -13.17071 -12.92214 -12.70870 -12.50732 -12.02021 -11.97453 -11.88240 -11.74850 -11.59676 -11.01628 -10.63505 -9.85277 -9.65956 -9.40103 -8.72792 -6.47794 0.43687 0.52408 1.48511 1.57578 1.76134 2.50493 2.87094 3.07978 3.65002 3.72170 3.98388 4.06906 4.22245 4.23433 4.27280 4.54499 4.57575 4.64511 4.80823 4.89445 4.93904 4.98746 5.12940 5.17547 5.23039 5.29964 5.50322 5.54905 5.59535 5.84522 5.91316 6.08208 6.12863 6.19726 6.48231 6.58054 7.32840 8.63729 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.034582 B = 0.006453 C = 0.006160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.470622 B = 4337.879941 C = 4544.558383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 C 0.138 3.862 4 H 0.074 0.926 5 N -0.829 5.829 6 C -0.112 4.112 7 C -0.134 4.134 8 C -0.110 4.110 9 C -0.145 4.145 10 C -0.061 4.061 11 C 0.040 3.960 12 C -0.604 4.604 13 H 0.044 0.956 14 C -0.035 4.035 15 N -0.934 5.934 16 Si 1.121 2.879 17 H -0.270 1.270 18 H -0.271 1.271 19 H -0.278 1.278 20 C -0.133 4.133 21 H 0.045 0.955 22 H 0.058 0.942 23 H 0.067 0.933 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.347 0.653 27 H 0.345 0.655 28 H 0.149 0.851 29 H 0.148 0.852 30 H 0.108 0.892 31 H -0.004 1.004 32 H -0.002 1.002 33 H 0.256 0.744 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.072 -3.989 13.871 17.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.145 4.145 3 C 0.026 3.974 4 H 0.093 0.907 5 N -0.358 5.358 6 C -0.114 4.114 7 C -0.152 4.152 8 C -0.127 4.127 9 C -0.164 4.164 10 C -0.061 4.061 11 C 0.003 3.997 12 C -0.642 4.642 13 H 0.062 0.938 14 C -0.232 4.232 15 N -0.571 5.571 16 Si 0.942 3.058 17 H -0.196 1.196 18 H -0.196 1.196 19 H -0.203 1.203 20 C -0.152 4.152 21 H 0.064 0.936 22 H 0.077 0.923 23 H 0.086 0.914 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.161 0.839 27 H 0.158 0.842 28 H 0.167 0.833 29 H 0.166 0.834 30 H 0.126 0.874 31 H 0.015 0.985 32 H 0.016 0.984 33 H 0.065 0.935 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.253 -3.048 12.658 16.572 hybrid contribution 0.911 -1.180 0.448 1.556 sum -9.342 -4.228 13.106 16.641 Atomic orbital electron populations 1.21635 0.94135 1.01502 1.02278 1.21496 0.97192 0.93843 1.01965 1.20377 0.86508 0.96626 0.93898 0.90732 1.59054 1.66257 1.07192 1.03280 1.20999 0.98422 0.99180 0.92836 1.21062 0.93252 1.02174 0.98671 1.21353 0.95641 0.98973 0.96764 1.21126 0.99523 1.02371 0.93349 1.20216 0.94460 0.95308 0.96113 1.18279 0.93904 0.96649 0.90865 1.22213 1.44288 0.92388 1.05306 0.93797 1.27486 0.92778 1.10949 0.91988 1.70890 1.46416 1.04549 1.35206 0.82890 0.77555 0.68770 0.76629 1.19555 1.19618 1.20345 1.20913 0.93716 1.02594 0.97972 0.93566 0.92284 0.91445 0.92789 0.91144 0.83876 0.84219 0.83299 0.83382 0.87377 0.98538 0.98393 0.93501 0.87916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.80 71.98 0.71 -1.92 16 2 C -0.11 -2.33 5.56 30.60 0.17 -2.16 16 3 C 0.14 3.40 2.98 44.16 0.13 3.53 16 4 H 0.07 2.03 8.00 -2.39 -0.02 2.01 16 5 N -0.83 -16.42 8.51 -171.80 -1.46 -17.89 16 6 C -0.11 -3.45 4.94 -19.87 -0.10 -3.55 16 7 C -0.13 -3.61 9.29 22.27 0.21 -3.40 16 8 C -0.11 -3.33 10.05 22.27 0.22 -3.10 16 9 C -0.15 -5.78 9.70 22.27 0.22 -5.57 16 10 C -0.06 -2.78 5.07 -19.87 -0.10 -2.88 16 11 C 0.04 2.20 4.42 29.10 0.13 2.33 16 12 C -0.60 -35.78 9.09 25.60 0.23 -35.55 16 13 H 0.04 2.59 7.74 -2.91 -0.02 2.57 16 14 C -0.03 -2.04 5.46 84.65 0.46 -1.58 16 15 N -0.93 -58.74 13.65 21.45 0.29 -58.45 16 16 Si 1.12 51.20 29.90 68.60 2.05 53.25 16 17 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 19 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 20 C -0.13 -5.34 9.33 22.27 0.21 -5.14 16 21 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 22 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.07 1.26 7.75 -2.39 -0.02 1.24 16 24 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.35 5.69 7.35 -89.70 -0.66 5.03 16 27 H 0.35 6.83 9.06 -89.70 -0.81 6.02 16 28 H 0.15 2.84 6.67 -2.91 -0.02 2.82 16 29 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 30 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 31 H 0.00 -0.21 7.96 -2.39 -0.02 -0.23 16 32 H 0.00 -0.12 7.94 -2.39 -0.02 -0.14 16 33 H 0.26 16.31 7.22 -92.71 -0.67 15.64 16 34 H 0.10 4.25 8.04 -2.91 -0.02 4.22 16 Total: -1.00 -67.17 285.49 3.08 -64.09 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -0.29 Total: 17.97 kcal Atomic # 6 Polarization: -61.47 SS G_CDS: 2.49 Total: -58.98 kcal Atomic # 7 Polarization: -75.17 SS G_CDS: -1.17 Total: -76.34 kcal Atomic # 14 Polarization: 51.20 SS G_CDS: 2.05 Total: 53.25 kcal Total: -67.17 3.08 -64.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260704868.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.305 kcal (2) G-P(sol) polarization free energy of solvation -67.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds