Wall clock time and date at job start Mon Mar 30 2020 02:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47332 * 2 1 4 4 H 1.08996 * 109.47352 * 54.99600 * 3 2 1 5 5 N 1.46905 * 109.46947 * 294.99830 * 3 2 1 6 6 C 1.50697 * 109.47213 * 174.99878 * 3 2 1 7 7 C 1.38265 * 120.00182 * 79.99764 * 6 3 2 8 8 C 1.38209 * 120.00249 * 179.97438 * 7 6 3 9 9 C 1.38257 * 119.99815 * 359.96132 * 8 7 6 10 10 C 1.38209 * 120.00555 * 359.97438 * 9 8 7 11 11 C 1.50692 * 120.00677 * 180.02562 * 10 9 8 12 12 C 1.50710 * 109.47334 * 90.00070 * 11 10 9 13 13 H 1.07997 * 119.99208 * 359.97438 * 12 11 10 14 14 C 1.37869 * 120.00486 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00445 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99799 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47116 * 90.00005 * 16 14 12 18 18 H 1.48504 * 109.47284 * 210.00234 * 16 14 12 19 19 H 1.48498 * 109.47213 * 330.00258 * 16 14 12 20 20 C 1.38214 * 120.00281 * 259.72541 * 6 3 2 21 21 H 1.09001 * 109.46974 * 300.00562 * 1 2 3 22 22 H 1.09004 * 109.46840 * 59.99935 * 1 2 3 23 23 H 1.08992 * 109.47597 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47653 * 239.99648 * 2 1 3 25 25 H 1.09001 * 109.47049 * 119.99595 * 2 1 3 26 26 H 1.00901 * 110.99869 * 176.04901 * 5 3 2 27 27 H 1.00896 * 110.99543 * 300.00023 * 5 3 2 28 28 H 1.08004 * 119.99624 * 359.97438 * 7 6 3 29 29 H 1.07994 * 120.00021 * 179.97438 * 8 7 6 30 30 H 1.08008 * 119.99955 * 180.02562 * 9 8 7 31 31 H 1.08999 * 109.47443 * 210.00117 * 11 10 9 32 32 H 1.09004 * 109.47128 * 330.00586 * 11 10 9 33 33 H 0.96995 * 120.00552 * 179.97438 * 15 14 12 34 34 H 1.07998 * 119.99707 * 359.97438 * 20 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 7 1.6514 2.0992 -1.2553 6 6 3.5419 1.4443 0.1239 7 6 4.3276 1.2029 -0.9880 8 6 5.7050 1.2051 -0.8745 9 6 6.2973 1.4493 0.3507 10 6 5.5120 1.6919 1.4619 11 6 6.1576 1.9587 2.7971 12 6 6.3944 3.4388 2.9539 13 1 6.1065 4.1181 2.1652 14 6 6.9793 3.9255 4.1035 15 7 7.1864 5.2170 4.2401 16 14 7.4778 2.7503 5.4674 17 1 8.8746 2.2979 5.2450 18 1 7.3847 3.4440 6.7772 19 1 6.5703 1.5749 5.4642 20 6 4.1341 1.6927 1.3477 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.9205 3.0717 -1.2530 27 1 2.0423 1.6178 -2.0512 28 1 3.8648 1.0127 -1.9452 29 1 6.3186 1.0161 -1.7429 30 1 7.3737 1.4514 0.4393 31 1 5.5014 1.6094 3.5943 32 1 7.1095 1.4307 2.8524 33 1 7.5976 5.5594 5.0491 34 1 3.5205 1.8860 2.2152 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260704869.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:09 Heat of formation + Delta-G solvation = 0.364364 kcal Electronic energy + Delta-G solvation = -14297.611828 eV Core-core repulsion = 12001.137430 eV Total energy + Delta-G solvation = -2296.474398 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.24936 -36.22690 -33.31850 -31.55904 -31.03053 -30.11162 -27.49837 -25.18456 -23.06276 -21.80036 -21.14925 -19.20178 -16.80750 -16.33256 -15.98237 -14.88194 -14.72145 -14.28094 -14.19117 -13.37635 -13.16096 -12.89897 -12.49697 -12.25807 -11.98490 -11.68521 -11.59775 -11.20567 -10.95796 -10.82216 -10.67788 -10.45376 -10.05870 -9.94542 -9.42931 -8.74947 -8.61190 -8.23075 -7.87999 -6.10840 -4.10366 1.88139 1.99371 3.25814 3.33792 3.36457 4.31661 4.38262 4.67552 4.90965 5.17244 5.20849 5.22396 5.37783 5.46968 5.58659 5.71684 5.85144 5.92214 6.02858 6.04711 6.12898 6.30068 6.38509 6.46493 6.60403 6.89366 6.94302 6.97946 7.01426 7.24065 7.48908 7.54571 7.56220 7.68127 8.45718 8.93852 9.49232 11.02110 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.035590 B = 0.006637 C = 0.006274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.556772 B = 4217.836362 C = 4461.805298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 C 0.132 3.868 4 H 0.086 0.914 5 N -0.838 5.838 6 C -0.125 4.125 7 C -0.145 4.145 8 C -0.120 4.120 9 C -0.124 4.124 10 C -0.026 4.026 11 C 0.013 3.987 12 C -0.514 4.514 13 H 0.073 0.927 14 C 0.070 3.930 15 N -0.899 5.899 16 Si 0.878 3.122 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.265 1.265 20 C -0.112 4.112 21 H 0.050 0.950 22 H 0.064 0.936 23 H 0.045 0.955 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.343 0.657 27 H 0.336 0.664 28 H 0.107 0.893 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.028 0.972 32 H 0.023 0.977 33 H 0.265 0.735 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.364 -9.863 -8.827 15.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.147 4.147 3 C 0.021 3.979 4 H 0.104 0.896 5 N -0.366 5.366 6 C -0.127 4.127 7 C -0.164 4.164 8 C -0.138 4.138 9 C -0.142 4.142 10 C -0.026 4.026 11 C -0.024 4.024 12 C -0.552 4.552 13 H 0.091 0.909 14 C -0.132 4.132 15 N -0.538 5.538 16 Si 0.705 3.295 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.189 1.189 20 C -0.131 4.131 21 H 0.069 0.931 22 H 0.083 0.917 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.155 0.845 27 H 0.149 0.851 28 H 0.125 0.875 29 H 0.130 0.870 30 H 0.136 0.864 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.072 -9.898 -8.495 15.888 hybrid contribution 1.562 -0.205 0.646 1.703 sum -7.510 -10.103 -7.849 14.835 Atomic orbital electron populations 1.21680 0.95363 1.00613 1.02434 1.21515 0.96185 0.95099 1.01923 1.20426 0.88720 0.95518 0.93279 0.89580 1.59089 1.66559 1.07093 1.03863 1.20674 0.96592 1.01297 0.94088 1.20608 0.93783 1.04547 0.97444 1.20982 0.94567 1.00949 0.97279 1.21080 0.99909 1.00804 0.92396 1.20299 0.93157 0.92162 0.96968 1.18825 0.95487 0.98312 0.89763 1.20912 1.40519 0.89732 1.03998 0.90900 1.24994 0.95117 0.95008 0.98084 1.69894 1.43698 1.12311 1.27869 0.86804 0.79478 0.81560 0.81673 1.20137 1.21176 1.18944 1.20930 0.94710 1.00813 0.96661 0.93096 0.91676 0.93617 0.92280 0.91681 0.84452 0.85114 0.87518 0.87018 0.86437 0.95413 0.95854 0.92557 0.86455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.80 37.15 0.36 -1.15 16 2 C -0.11 -1.29 5.56 -26.73 -0.15 -1.44 16 3 C 0.13 1.74 2.99 -68.86 -0.21 1.54 16 4 H 0.09 1.20 8.00 -51.93 -0.42 0.78 16 5 N -0.84 -9.73 8.51 -5.65 -0.05 -9.77 16 6 C -0.12 -1.98 4.94 -104.62 -0.52 -2.49 16 7 C -0.15 -2.18 9.29 -39.58 -0.37 -2.55 16 8 C -0.12 -1.93 10.05 -39.59 -0.40 -2.33 16 9 C -0.12 -2.36 9.70 -39.59 -0.38 -2.74 16 10 C -0.03 -0.54 5.07 -104.63 -0.53 -1.07 16 11 C 0.01 0.32 4.17 -29.03 -0.12 0.20 16 12 C -0.51 -14.61 9.65 -34.44 -0.33 -14.94 16 13 H 0.07 2.28 7.98 -52.49 -0.42 1.86 16 14 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 15 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 16 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 20 C -0.11 -2.13 9.33 -39.58 -0.37 -2.50 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.06 0.70 7.75 -51.93 -0.40 0.30 16 23 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.34 4.00 9.06 -39.29 -0.36 3.64 16 27 H 0.34 3.52 7.35 -39.29 -0.29 3.23 16 28 H 0.11 1.31 6.67 -52.48 -0.35 0.96 16 29 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.12 2.16 8.06 -52.48 -0.42 1.74 16 31 H 0.03 0.66 7.14 -51.93 -0.37 0.29 16 32 H 0.02 0.55 7.51 -51.93 -0.39 0.16 16 33 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.12 2.18 8.03 -52.49 -0.42 1.76 16 LS Contribution 283.20 15.07 4.27 4.27 Total: -1.00 -29.97 283.20 -7.90 -37.88 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -5.12 Total: 5.29 kcal Atomic # 6 Polarization: -24.47 SS G_CDS: -3.11 Total: -27.57 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.73 Total: -36.55 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.97 -7.90 -37.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260704869.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.239 kcal (2) G-P(sol) polarization free energy of solvation -29.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds