Wall clock time and date at job start Mon Mar 30 2020 02:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47332 * 2 1 4 4 H 1.08996 * 109.47352 * 54.99600 * 3 2 1 5 5 N 1.46905 * 109.46947 * 294.99830 * 3 2 1 6 6 C 1.50697 * 109.47213 * 174.99878 * 3 2 1 7 7 C 1.38265 * 120.00182 * 79.99764 * 6 3 2 8 8 C 1.38209 * 120.00249 * 179.97438 * 7 6 3 9 9 C 1.38257 * 119.99815 * 359.96132 * 8 7 6 10 10 C 1.38209 * 120.00555 * 359.97438 * 9 8 7 11 11 C 1.50692 * 120.00677 * 180.02562 * 10 9 8 12 12 C 1.50710 * 109.47334 * 90.00070 * 11 10 9 13 13 H 1.07997 * 119.99208 * 359.97438 * 12 11 10 14 14 C 1.37869 * 120.00486 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00445 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99799 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47116 * 90.00005 * 16 14 12 18 18 H 1.48504 * 109.47284 * 210.00234 * 16 14 12 19 19 H 1.48498 * 109.47213 * 330.00258 * 16 14 12 20 20 C 1.38214 * 120.00281 * 259.72541 * 6 3 2 21 21 H 1.09001 * 109.46974 * 300.00562 * 1 2 3 22 22 H 1.09004 * 109.46840 * 59.99935 * 1 2 3 23 23 H 1.08992 * 109.47597 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47653 * 239.99648 * 2 1 3 25 25 H 1.09001 * 109.47049 * 119.99595 * 2 1 3 26 26 H 1.00901 * 110.99869 * 176.04901 * 5 3 2 27 27 H 1.00896 * 110.99543 * 300.00023 * 5 3 2 28 28 H 1.08004 * 119.99624 * 359.97438 * 7 6 3 29 29 H 1.07994 * 120.00021 * 179.97438 * 8 7 6 30 30 H 1.08008 * 119.99955 * 180.02562 * 9 8 7 31 31 H 1.08999 * 109.47443 * 210.00117 * 11 10 9 32 32 H 1.09004 * 109.47128 * 330.00586 * 11 10 9 33 33 H 0.96995 * 120.00552 * 179.97438 * 15 14 12 34 34 H 1.07998 * 119.99707 * 359.97438 * 20 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 7 1.6514 2.0992 -1.2553 6 6 3.5419 1.4443 0.1239 7 6 4.3276 1.2029 -0.9880 8 6 5.7050 1.2051 -0.8745 9 6 6.2973 1.4493 0.3507 10 6 5.5120 1.6919 1.4619 11 6 6.1576 1.9587 2.7971 12 6 6.3944 3.4388 2.9539 13 1 6.1065 4.1181 2.1652 14 6 6.9793 3.9255 4.1035 15 7 7.1864 5.2170 4.2401 16 14 7.4778 2.7503 5.4674 17 1 8.8746 2.2979 5.2450 18 1 7.3847 3.4440 6.7772 19 1 6.5703 1.5749 5.4642 20 6 4.1341 1.6927 1.3477 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.9205 3.0717 -1.2530 27 1 2.0423 1.6178 -2.0512 28 1 3.8648 1.0127 -1.9452 29 1 6.3186 1.0161 -1.7429 30 1 7.3737 1.4514 0.4393 31 1 5.5014 1.6094 3.5943 32 1 7.1095 1.4307 2.8524 33 1 7.5976 5.5594 5.0491 34 1 3.5205 1.8860 2.2152 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260704869.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:08 Heat of formation + Delta-G solvation = -18.408497 kcal Electronic energy + Delta-G solvation = -14298.425880 eV Core-core repulsion = 12001.137430 eV Total energy + Delta-G solvation = -2297.288450 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.56794 -37.41426 -35.26837 -33.24414 -32.12126 -31.37624 -29.27253 -26.24800 -24.90068 -23.03642 -22.48165 -20.54037 -19.01508 -17.61019 -17.08021 -16.42894 -16.03296 -15.89727 -15.39327 -14.90298 -14.49879 -14.19141 -14.02683 -13.72914 -13.51737 -13.04905 -12.89567 -12.74325 -12.43123 -12.06422 -11.96140 -11.78836 -11.67721 -11.62688 -11.45509 -10.83071 -9.81061 -9.58257 -9.30836 -8.33989 -6.39598 0.51360 0.59574 1.33217 1.35105 1.47126 2.31768 2.92684 3.00138 3.68650 3.77808 4.03954 4.13621 4.27675 4.30185 4.32636 4.60529 4.64357 4.71126 4.85626 4.97172 4.98137 5.02710 5.17477 5.22914 5.30309 5.34131 5.52724 5.53854 5.62147 5.65654 5.97126 6.14891 6.22937 6.26333 6.59525 6.66287 7.24154 8.82660 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.035590 B = 0.006637 C = 0.006274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.556772 B = 4217.836362 C = 4461.805298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.106 4.106 3 C 0.137 3.863 4 H 0.074 0.926 5 N -0.831 5.831 6 C -0.117 4.117 7 C -0.135 4.135 8 C -0.114 4.114 9 C -0.143 4.143 10 C -0.062 4.062 11 C 0.020 3.980 12 C -0.521 4.521 13 H 0.025 0.975 14 C 0.009 3.991 15 N -0.948 5.948 16 Si 0.951 3.049 17 H -0.263 1.263 18 H -0.280 1.280 19 H -0.248 1.248 20 C -0.132 4.132 21 H 0.045 0.955 22 H 0.064 0.936 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.344 0.656 27 H 0.346 0.654 28 H 0.145 0.855 29 H 0.146 0.854 30 H 0.115 0.885 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.268 0.732 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.101 -11.968 -10.023 18.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.144 4.144 3 C 0.025 3.975 4 H 0.093 0.907 5 N -0.360 5.360 6 C -0.119 4.119 7 C -0.153 4.153 8 C -0.132 4.132 9 C -0.161 4.161 10 C -0.062 4.062 11 C -0.017 4.017 12 C -0.559 4.559 13 H 0.044 0.956 14 C -0.189 4.189 15 N -0.588 5.588 16 Si 0.774 3.226 17 H -0.188 1.188 18 H -0.206 1.206 19 H -0.171 1.171 20 C -0.151 4.151 21 H 0.065 0.935 22 H 0.083 0.917 23 H 0.077 0.923 24 H 0.087 0.913 25 H 0.076 0.924 26 H 0.156 0.844 27 H 0.160 0.840 28 H 0.163 0.837 29 H 0.163 0.837 30 H 0.133 0.867 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.819 -12.016 -9.715 18.308 hybrid contribution 1.724 0.507 0.875 1.999 sum -8.095 -11.509 -8.840 16.617 Atomic orbital electron populations 1.21635 0.94317 1.01465 1.02197 1.21487 0.97024 0.93772 1.02079 1.20395 0.86729 0.96647 0.93749 0.90740 1.59067 1.66296 1.07151 1.03450 1.20992 0.98297 0.99521 0.93095 1.21043 0.93397 1.02269 0.98564 1.21345 0.95546 0.99299 0.97021 1.21196 0.99867 1.01847 0.93220 1.20188 0.94320 0.95370 0.96332 1.18660 0.95978 0.95084 0.92014 1.21134 1.40196 0.91749 1.02848 0.95616 1.25986 0.95001 0.96849 1.01019 1.70050 1.45086 1.14663 1.29038 0.85644 0.79779 0.79422 0.77765 1.18835 1.20598 1.17135 1.20987 0.93993 1.02042 0.98033 0.93540 0.91692 0.92252 0.91262 0.92380 0.84370 0.83952 0.83723 0.83670 0.86715 0.95384 0.95337 0.92263 0.87331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.80 71.98 0.71 -1.88 16 2 C -0.11 -2.23 5.56 30.59 0.17 -2.06 16 3 C 0.14 3.35 2.99 44.17 0.13 3.48 16 4 H 0.07 2.02 8.00 -2.39 -0.02 2.00 16 5 N -0.83 -17.03 8.51 -171.80 -1.46 -18.50 16 6 C -0.12 -3.53 4.94 -19.86 -0.10 -3.63 16 7 C -0.13 -3.62 9.29 22.27 0.21 -3.41 16 8 C -0.11 -3.40 10.05 22.27 0.22 -3.18 16 9 C -0.14 -5.41 9.70 22.27 0.22 -5.19 16 10 C -0.06 -2.66 5.07 -19.87 -0.10 -2.76 16 11 C 0.02 0.97 4.17 29.10 0.12 1.09 16 12 C -0.52 -30.89 9.65 25.60 0.25 -30.64 16 13 H 0.03 1.70 7.98 -2.91 -0.02 1.68 16 14 C 0.01 0.51 5.47 84.65 0.46 0.97 16 15 N -0.95 -60.02 13.96 21.44 0.30 -59.72 16 16 Si 0.95 44.39 27.47 68.60 1.88 46.27 16 17 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 19 H -0.25 -10.79 6.54 99.48 0.65 -10.14 16 20 C -0.13 -5.05 9.33 22.27 0.21 -4.84 16 21 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 22 H 0.06 1.22 7.75 -2.38 -0.02 1.20 16 23 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.34 7.24 9.06 -89.69 -0.81 6.42 16 27 H 0.35 5.92 7.35 -89.70 -0.66 5.26 16 28 H 0.15 2.82 6.67 -2.91 -0.02 2.80 16 29 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 30 H 0.11 4.25 8.06 -2.91 -0.02 4.23 16 31 H 0.03 1.34 7.14 -2.39 -0.02 1.33 16 32 H 0.03 1.34 7.51 -2.39 -0.02 1.32 16 33 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 34 H 0.11 4.20 8.03 -2.91 -0.02 4.18 16 Total: -1.00 -66.87 283.20 2.77 -64.10 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -0.44 Total: 19.90 kcal Atomic # 6 Polarization: -54.54 SS G_CDS: 2.49 Total: -52.05 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -1.16 Total: -78.22 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.88 Total: 46.27 kcal Total: -66.87 2.77 -64.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260704869.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.690 kcal (2) G-P(sol) polarization free energy of solvation -66.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds