Wall clock time and date at job start Mon Mar 30 2020 02:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00185 * 2 1 4 4 H 1.48500 * 109.47213 * 266.09618 * 3 2 1 5 5 H 1.48506 * 109.46679 * 26.09654 * 3 2 1 6 6 H 1.48502 * 109.47012 * 146.09094 * 3 2 1 7 7 C 1.37878 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00184 * 353.32241 * 7 2 1 9 9 C 1.50703 * 119.99564 * 173.32141 * 7 2 1 10 10 H 1.08998 * 109.63294 * 354.68879 * 9 7 2 11 11 C 1.53041 * 109.54741 * 114.93124 * 9 7 2 12 12 H 1.09000 * 109.38582 * 63.45035 * 11 9 7 13 13 O 1.42897 * 109.38296 * 303.65713 * 11 9 7 14 14 C 1.52590 * 109.98672 * 183.50070 * 11 9 7 15 15 C 1.52584 * 110.64250 * 290.01512 * 14 11 9 16 16 C 1.53038 * 109.99100 * 69.98252 * 15 14 11 17 17 S 1.81667 * 109.00024 * 296.35705 * 16 15 14 18 18 O 1.42106 * 108.65980 * 299.96215 * 17 16 15 19 19 O 1.42095 * 108.66652 * 168.62555 * 17 16 15 20 20 H 0.97003 * 119.99865 * 359.97438 * 1 2 3 21 21 H 0.96705 * 113.99654 * 180.02562 * 13 11 9 22 22 H 1.09000 * 109.24252 * 50.31216 * 14 11 9 23 23 H 1.09001 * 109.24383 * 169.75043 * 14 11 9 24 24 H 1.09001 * 109.38790 * 190.14297 * 15 14 11 25 25 H 1.09001 * 109.38803 * 309.92968 * 15 14 11 26 26 H 1.09000 * 109.54358 * 56.20460 * 16 15 14 27 27 H 1.09000 * 109.55202 * 176.49379 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5793 1.9988 -1.3968 5 1 1.4077 2.6751 0.6159 6 1 3.5030 1.4654 0.7811 7 6 2.0045 -1.1941 -0.0005 8 1 1.4700 -2.1263 0.1078 9 6 3.5039 -1.1984 -0.1523 10 1 3.8556 -0.1844 -0.3426 11 6 4.1468 -1.7313 1.1301 12 1 3.8456 -2.7677 1.2822 13 8 3.7134 -0.9435 2.2407 14 6 5.6671 -1.6588 1.0204 15 6 6.1826 -2.6788 0.0095 16 6 5.7831 -2.2594 -1.4071 17 16 3.9714 -2.2743 -1.5395 18 8 3.5067 -3.5901 -1.2712 19 8 3.5989 -1.6378 -2.7542 20 1 -0.4850 0.8401 0.0004 21 1 4.0822 -1.2239 3.0896 22 1 5.9569 -0.6580 0.7006 23 1 6.1079 -1.8659 1.9956 24 1 7.2690 -2.7375 0.0765 25 1 5.7533 -3.6561 0.2303 26 1 6.1553 -1.2548 -1.6085 27 1 6.2074 -2.9584 -2.1278 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260773224.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:24 Heat of formation + Delta-G solvation = -130.636200 kcal Electronic energy + Delta-G solvation = -14148.046759 eV Core-core repulsion = 11611.950850 eV Total energy + Delta-G solvation = -2536.095909 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.060 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -37.78612 -35.70061 -34.73406 -34.21336 -33.39941 -30.53837 -27.62385 -24.43577 -21.77146 -20.49547 -17.94363 -17.47370 -16.89649 -15.50841 -15.34055 -14.71476 -14.32391 -14.18600 -13.82922 -13.11916 -12.90029 -12.42439 -12.23691 -11.72721 -11.16444 -11.01952 -10.89877 -10.86982 -10.77075 -10.34674 -10.27371 -9.97460 -9.79258 -9.25393 -9.15327 -8.85829 -6.62101 -4.48316 1.08549 3.16840 3.21593 3.29111 3.86186 4.12576 4.58127 4.72948 4.86693 5.03174 5.14874 5.22742 5.41782 5.52170 5.69958 5.75685 5.98821 6.05555 6.11125 6.23216 6.29529 6.60560 7.00149 7.84295 8.30819 8.47991 8.94519 10.43832 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.030986 B = 0.015858 C = 0.013196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.408151 B = 1765.230821 C = 2121.344363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.089 3.911 3 Si 0.880 3.120 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.245 1.245 7 C -0.435 4.435 8 H 0.100 0.900 9 C -0.386 4.386 10 H 0.101 0.899 11 C 0.129 3.871 12 H 0.066 0.934 13 O -0.537 6.537 14 C -0.173 4.173 15 C -0.095 4.095 16 C -0.636 4.636 17 S 2.300 3.700 18 O -0.968 6.968 19 O -0.970 6.970 20 H 0.280 0.720 21 H 0.360 0.640 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.115 0.885 27 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.005 -0.450 3.649 11.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.125 4.125 3 Si 0.704 3.296 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.169 1.169 7 C -0.485 4.485 8 H 0.118 0.882 9 C -0.495 4.495 10 H 0.119 0.881 11 C 0.067 3.933 12 H 0.084 0.916 13 O -0.340 6.340 14 C -0.211 4.211 15 C -0.133 4.133 16 C -0.758 4.758 17 S 2.493 3.507 18 O -0.964 6.964 19 O -0.966 6.966 20 H 0.090 0.910 21 H 0.205 0.795 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.089 0.911 25 H 0.096 0.904 26 H 0.133 0.867 27 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 10.220 -0.605 2.376 10.510 hybrid contribution 1.319 0.850 0.668 1.705 sum 11.539 0.245 3.044 11.936 Atomic orbital electron populations 1.69880 1.06944 1.29200 1.40724 1.25292 0.94896 1.00334 0.91994 0.86700 0.81584 0.81636 0.79650 1.19019 1.20412 1.16857 1.20655 0.85985 0.96617 1.45194 0.88203 1.27692 1.05594 1.10038 1.06192 0.88132 1.21565 0.89036 0.94814 0.87876 0.91626 1.86772 1.72755 1.58294 1.16188 1.22554 0.98109 1.00431 0.99991 1.21002 1.01753 0.99558 0.91030 1.30519 1.32878 1.08638 1.03776 1.15283 0.76605 0.78305 0.80467 1.93357 1.77875 1.38963 1.86207 1.93383 1.80545 1.76994 1.45714 0.90960 0.79547 0.90858 0.90859 0.91073 0.90381 0.86674 0.87359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.44 13.96 55.43 0.77 -22.66 15 2 C 0.09 2.40 5.47 -17.82 -0.10 2.30 15 3 Si 0.88 20.29 26.93 -169.99 -4.58 15.72 15 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 6 H -0.24 -5.35 6.83 56.52 0.39 -4.96 15 7 C -0.43 -11.63 8.41 -34.44 -0.29 -11.92 15 8 H 0.10 2.88 8.06 -52.49 -0.42 2.46 15 9 C -0.39 -8.64 2.08 -27.86 -0.06 -8.70 15 10 H 0.10 2.17 4.88 -51.93 -0.25 1.92 15 11 C 0.13 2.39 2.76 -26.92 -0.07 2.32 15 12 H 0.07 1.21 8.01 -51.93 -0.42 0.79 15 13 O -0.54 -9.95 12.83 -35.23 -0.45 -10.40 15 14 C -0.17 -2.47 5.23 -27.15 -0.14 -2.61 15 15 C -0.10 -1.34 5.73 -26.92 -0.15 -1.49 15 16 C -0.64 -10.29 6.35 37.18 0.24 -10.05 15 17 S 2.30 50.85 4.67 -107.50 -0.50 50.34 15 18 O -0.97 -23.78 17.91 -57.81 -1.04 -24.81 15 19 O -0.97 -24.96 18.10 -57.81 -1.05 -26.01 15 20 H 0.28 7.22 8.31 -40.82 -0.34 6.88 15 21 H 0.36 4.55 9.07 45.56 0.41 4.96 15 22 H 0.07 1.03 8.09 -51.93 -0.42 0.61 15 23 H 0.07 0.83 8.14 -51.93 -0.42 0.40 15 24 H 0.07 0.82 8.14 -51.93 -0.42 0.39 15 25 H 0.08 1.10 8.00 -51.93 -0.42 0.68 15 26 H 0.11 1.66 8.14 -51.93 -0.42 1.24 15 27 H 0.11 1.58 8.14 -51.93 -0.42 1.16 15 LS Contribution 238.47 15.07 3.59 3.59 Total: -1.00 -33.18 238.47 -6.18 -39.36 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -2.36 Total: 5.03 kcal Atomic # 6 Polarization: -29.58 SS G_CDS: -0.58 Total: -30.16 kcal Atomic # 7 Polarization: -23.44 SS G_CDS: 0.77 Total: -22.66 kcal Atomic # 8 Polarization: -58.68 SS G_CDS: -2.53 Total: -61.22 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.58 Total: 15.72 kcal Atomic # 16 Polarization: 50.85 SS G_CDS: -0.50 Total: 50.34 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -33.18 -6.18 -39.36 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260773224.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.277 kcal (2) G-P(sol) polarization free energy of solvation -33.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds