Wall clock time and date at job start Mon Mar 30 2020 02:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00185 * 2 1 4 4 H 1.48500 * 109.47213 * 266.09618 * 3 2 1 5 5 H 1.48506 * 109.46679 * 26.09654 * 3 2 1 6 6 H 1.48502 * 109.47012 * 146.09094 * 3 2 1 7 7 C 1.37878 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00184 * 353.32241 * 7 2 1 9 9 C 1.50703 * 119.99564 * 173.32141 * 7 2 1 10 10 H 1.08998 * 109.63294 * 354.68879 * 9 7 2 11 11 C 1.53041 * 109.54741 * 114.93124 * 9 7 2 12 12 H 1.09000 * 109.38582 * 63.45035 * 11 9 7 13 13 O 1.42897 * 109.38296 * 303.65713 * 11 9 7 14 14 C 1.52590 * 109.98672 * 183.50070 * 11 9 7 15 15 C 1.52584 * 110.64250 * 290.01512 * 14 11 9 16 16 C 1.53038 * 109.99100 * 69.98252 * 15 14 11 17 17 S 1.81667 * 109.00024 * 296.35705 * 16 15 14 18 18 O 1.42106 * 108.65980 * 299.96215 * 17 16 15 19 19 O 1.42095 * 108.66652 * 168.62555 * 17 16 15 20 20 H 0.97003 * 119.99865 * 359.97438 * 1 2 3 21 21 H 0.96705 * 113.99654 * 180.02562 * 13 11 9 22 22 H 1.09000 * 109.24252 * 50.31216 * 14 11 9 23 23 H 1.09001 * 109.24383 * 169.75043 * 14 11 9 24 24 H 1.09001 * 109.38790 * 190.14297 * 15 14 11 25 25 H 1.09001 * 109.38803 * 309.92968 * 15 14 11 26 26 H 1.09000 * 109.54358 * 56.20460 * 16 15 14 27 27 H 1.09000 * 109.55202 * 176.49379 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5793 1.9988 -1.3968 5 1 1.4077 2.6751 0.6159 6 1 3.5030 1.4654 0.7811 7 6 2.0045 -1.1941 -0.0005 8 1 1.4700 -2.1263 0.1078 9 6 3.5039 -1.1984 -0.1523 10 1 3.8556 -0.1844 -0.3426 11 6 4.1468 -1.7313 1.1301 12 1 3.8456 -2.7677 1.2822 13 8 3.7134 -0.9435 2.2407 14 6 5.6671 -1.6588 1.0204 15 6 6.1826 -2.6788 0.0095 16 6 5.7831 -2.2594 -1.4071 17 16 3.9714 -2.2743 -1.5395 18 8 3.5067 -3.5901 -1.2712 19 8 3.5989 -1.6378 -2.7542 20 1 -0.4850 0.8401 0.0004 21 1 4.0822 -1.2239 3.0896 22 1 5.9569 -0.6580 0.7006 23 1 6.1079 -1.8659 1.9956 24 1 7.2690 -2.7375 0.0765 25 1 5.7533 -3.6561 0.2303 26 1 6.1553 -1.2548 -1.6085 27 1 6.2074 -2.9584 -2.1278 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260773224.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:23 Heat of formation + Delta-G solvation = -160.781862 kcal Electronic energy + Delta-G solvation = -14149.353973 eV Core-core repulsion = 11611.950850 eV Total energy + Delta-G solvation = -2537.403123 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.060 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.19816 -37.66916 -36.71803 -35.54176 -35.22047 -32.24353 -29.05441 -26.09891 -23.31342 -21.87130 -19.71883 -19.33748 -18.48936 -17.22831 -16.98978 -16.50204 -16.04863 -15.63649 -15.23911 -14.85409 -14.37964 -13.93515 -13.64116 -13.37233 -12.90963 -12.88643 -12.80027 -12.24943 -12.11847 -12.05969 -11.92186 -11.78995 -11.50584 -10.87902 -10.77711 -10.53638 -8.52950 -6.52698 -0.66551 1.31522 1.35472 1.47993 2.13313 2.26412 2.83382 3.11188 3.19477 3.68482 3.85469 3.94784 3.97003 4.12557 4.20707 4.52930 4.63065 4.80239 4.96176 5.02217 5.08082 5.26067 5.38973 5.90001 6.42896 7.03404 7.22874 8.60632 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.030986 B = 0.015858 C = 0.013196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.408151 B = 1765.230821 C = 2121.344363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.033 3.967 3 Si 0.929 3.071 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.218 1.218 7 C -0.488 4.488 8 H 0.047 0.953 9 C -0.408 4.408 10 H 0.111 0.889 11 C 0.126 3.874 12 H 0.054 0.946 13 O -0.562 6.562 14 C -0.168 4.168 15 C -0.103 4.103 16 C -0.594 4.594 17 S 2.332 3.668 18 O -0.997 6.997 19 O -1.009 7.009 20 H 0.278 0.722 21 H 0.385 0.615 22 H 0.086 0.914 23 H 0.115 0.885 24 H 0.125 0.875 25 H 0.078 0.922 26 H 0.153 0.847 27 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.663 -0.537 3.719 17.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.172 4.172 3 Si 0.750 3.250 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.141 1.141 7 C -0.532 4.532 8 H 0.065 0.935 9 C -0.519 4.519 10 H 0.128 0.872 11 C 0.065 3.935 12 H 0.072 0.928 13 O -0.369 6.369 14 C -0.206 4.206 15 C -0.141 4.141 16 C -0.725 4.725 17 S 2.528 3.472 18 O -0.994 6.994 19 O -1.006 7.006 20 H 0.088 0.912 21 H 0.233 0.767 22 H 0.105 0.895 23 H 0.133 0.867 24 H 0.143 0.857 25 H 0.096 0.904 26 H 0.171 0.829 27 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 15.708 -0.654 2.529 15.923 hybrid contribution 0.019 0.586 0.571 0.819 sum 15.727 -0.067 3.100 16.029 Atomic orbital electron populations 1.70000 1.08572 1.29541 1.46679 1.26123 0.95594 1.03708 0.91802 0.85962 0.81378 0.77725 0.79943 1.18780 1.20090 1.14078 1.20443 0.88351 0.94651 1.49774 0.93494 1.27967 1.03534 1.11235 1.09121 0.87157 1.21570 0.92258 0.93713 0.85994 0.92797 1.86707 1.73971 1.58507 1.17685 1.22545 0.93771 1.01489 1.02793 1.21270 1.05091 0.99276 0.88472 1.30159 1.22363 1.12651 1.07328 1.11845 0.80400 0.76660 0.78315 1.93366 1.80794 1.39003 1.86274 1.93379 1.83460 1.77640 1.46109 0.91245 0.76666 0.89487 0.86670 0.85671 0.90385 0.82888 0.83631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.37 13.96 21.45 0.30 -56.07 15 2 C 0.03 1.89 5.47 84.66 0.46 2.35 15 3 Si 0.93 42.78 26.93 68.60 1.85 44.63 15 4 H -0.26 -11.79 7.11 99.48 0.71 -11.08 15 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 15 6 H -0.22 -8.93 6.83 99.48 0.68 -8.25 15 7 C -0.49 -28.01 8.41 25.60 0.22 -27.79 15 8 H 0.05 3.04 8.06 -2.91 -0.02 3.01 15 9 C -0.41 -18.05 2.08 29.86 0.06 -17.98 15 10 H 0.11 4.57 4.88 -2.39 -0.01 4.56 15 11 C 0.13 4.39 2.76 30.47 0.08 4.47 15 12 H 0.05 1.95 8.01 -2.39 -0.02 1.93 15 13 O -0.56 -20.00 12.83 -148.98 -1.91 -21.91 15 14 C -0.17 -3.70 5.23 30.32 0.16 -3.54 15 15 C -0.10 -2.06 5.73 30.47 0.17 -1.89 15 16 C -0.59 -14.73 6.35 71.99 0.46 -14.27 15 17 S 2.33 98.29 4.67 -56.49 -0.26 98.03 15 18 O -1.00 -48.42 17.91 -127.39 -2.28 -50.71 15 19 O -1.01 -50.84 18.10 -127.39 -2.31 -53.15 15 20 H 0.28 15.83 8.31 -92.71 -0.77 15.06 15 21 H 0.38 8.80 9.07 -74.05 -0.67 8.13 15 22 H 0.09 1.77 8.09 -2.39 -0.02 1.75 15 23 H 0.11 1.71 8.14 -2.39 -0.02 1.69 15 24 H 0.13 1.53 8.14 -2.39 -0.02 1.51 15 25 H 0.08 1.68 8.00 -2.39 -0.02 1.66 15 26 H 0.15 3.00 8.14 -2.39 -0.02 2.98 15 27 H 0.15 2.95 8.14 -2.39 -0.02 2.93 15 Total: -1.00 -81.04 238.47 -2.52 -83.56 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.48 Total: 14.27 kcal Atomic # 6 Polarization: -60.27 SS G_CDS: 1.61 Total: -58.65 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: 0.30 Total: -56.07 kcal Atomic # 8 Polarization: -119.26 SS G_CDS: -6.50 Total: -125.76 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.85 Total: 44.63 kcal Atomic # 16 Polarization: 98.29 SS G_CDS: -0.26 Total: 98.03 kcal Total: -81.04 -2.52 -83.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260773224.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.219 kcal (2) G-P(sol) polarization free energy of solvation -81.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds