Wall clock time and date at job start Mon Mar 30 2020 02:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99943 * 2 1 4 4 H 1.48501 * 109.46909 * 270.00032 * 3 2 1 5 5 H 1.48502 * 109.47125 * 29.99801 * 3 2 1 6 6 H 1.48499 * 109.46971 * 150.00165 * 3 2 1 7 7 C 1.37876 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99736 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47026 * 179.97438 * 9 7 2 11 11 H 1.09005 * 108.78209 * 307.85020 * 10 9 7 12 12 C 1.54210 * 108.92765 * 66.45195 * 10 9 7 13 13 S 1.83824 * 103.02487 * 95.60819 * 12 10 9 14 14 O 1.42099 * 109.81248 * 148.05534 * 13 12 10 15 15 O 1.42104 * 109.81143 * 282.41008 * 13 12 10 16 16 C 1.84413 * 94.03671 * 35.13684 * 13 12 10 17 17 C 1.52384 * 108.92722 * 189.24271 * 10 9 7 18 18 H 1.09000 * 108.92005 * 0.02562 * 17 10 9 19 19 O 1.42894 * 108.92490 * 118.64774 * 17 10 9 20 20 H 0.96997 * 120.00238 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47012 * 59.99769 * 9 7 2 22 22 H 1.08998 * 109.46795 * 299.99856 * 9 7 2 23 23 H 1.09002 * 110.73710 * 214.04262 * 12 10 9 24 24 H 1.09001 * 110.73680 * 337.17627 * 12 10 9 25 25 H 1.08998 * 110.73155 * 206.52859 * 16 13 12 26 26 H 1.09000 * 110.71356 * 83.23510 * 16 13 12 27 27 H 0.96701 * 114.00093 * 179.97438 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 -0.0001 11 1 3.5411 -3.1787 0.8145 12 6 3.6393 -3.3021 -1.3376 13 16 5.1540 -3.0846 -2.3563 14 8 5.2941 -4.1798 -3.2508 15 8 5.2206 -1.7507 -2.8415 16 6 6.3017 -3.2875 -0.9272 17 6 5.5275 -2.6283 0.2320 18 1 5.8629 -1.5969 0.3403 19 8 5.8142 -3.3367 1.4395 20 1 -0.4850 0.8400 -0.0004 21 1 3.8745 -0.6808 0.8905 22 1 3.8751 -0.6796 -0.8895 23 1 3.4198 -4.3600 -1.1934 24 1 2.7909 -2.7921 -1.7939 25 1 7.2412 -2.7659 -1.1098 26 1 6.4789 -4.3433 -0.7219 27 1 6.7554 -3.3769 1.6579 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260794991.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:57 Heat of formation + Delta-G solvation = -123.427952 kcal Electronic energy + Delta-G solvation = -13682.818182 eV Core-core repulsion = 11147.034847 eV Total energy + Delta-G solvation = -2535.783336 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.060 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.29873 -36.78838 -35.76809 -34.74474 -32.41237 -30.03780 -27.80364 -25.14226 -21.95789 -19.79976 -18.72573 -17.53442 -16.92799 -16.15166 -15.77356 -15.57290 -14.69846 -14.11830 -13.69063 -13.61416 -12.88629 -12.76124 -12.22014 -11.92337 -11.81494 -11.55620 -11.43675 -11.04844 -10.88671 -10.53825 -10.07107 -9.83496 -9.79447 -9.66065 -9.28358 -8.60270 -6.11452 -4.11335 0.27273 2.66836 3.30618 3.37399 3.39842 3.77674 4.09312 4.24467 4.40775 4.61820 4.89210 5.09510 5.13924 5.24296 5.35469 5.53886 5.74212 6.27718 6.34719 6.51977 7.05817 7.16414 7.63188 7.68942 8.42427 8.91457 9.50066 11.01103 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.033973 B = 0.010640 C = 0.009690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.985413 B = 2630.881955 C = 2888.833204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.874 3.126 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.077 0.923 9 C -0.022 4.022 10 C -0.075 4.075 11 H 0.107 0.893 12 C -0.543 4.543 13 S 2.364 3.636 14 O -0.949 6.949 15 O -0.925 6.925 16 C -0.624 4.624 17 C 0.117 3.883 18 H 0.078 0.922 19 O -0.554 6.554 20 H 0.265 0.735 21 H 0.029 0.971 22 H 0.029 0.971 23 H 0.128 0.872 24 H 0.158 0.842 25 H 0.130 0.870 26 H 0.140 0.860 27 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.635 -5.792 -0.352 13.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.701 3.299 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.563 4.563 8 H 0.096 0.904 9 C -0.059 4.059 10 C -0.095 4.095 11 H 0.126 0.874 12 C -0.675 4.675 13 S 2.548 3.452 14 O -0.946 6.946 15 O -0.922 6.922 16 C -0.753 4.753 17 C 0.056 3.944 18 H 0.096 0.904 19 O -0.359 6.359 20 H 0.074 0.926 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.146 0.854 24 H 0.175 0.825 25 H 0.148 0.852 26 H 0.158 0.842 27 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 11.999 -5.563 -1.358 13.296 hybrid contribution 0.900 0.804 0.846 1.474 sum 12.900 -4.759 -0.512 13.759 Atomic orbital electron populations 1.69896 1.06283 1.27109 1.50378 1.24992 0.94735 0.99194 0.94245 0.86856 0.80377 0.83691 0.78952 1.19802 1.21282 1.18916 1.21026 0.88751 0.94733 1.51771 0.90447 1.19968 0.98297 0.89738 0.97900 1.21192 0.90608 1.01268 0.96404 0.87445 1.30325 1.18328 1.09355 1.09466 1.09894 0.81474 0.75546 0.78302 1.93571 1.85266 1.54496 1.61306 1.93643 1.85185 1.35233 1.78122 1.31251 1.14303 1.10408 1.19324 1.22220 0.94652 0.95009 0.82487 0.90409 1.86631 1.29831 1.77786 1.41651 0.92557 0.95321 0.95267 0.85381 0.82453 0.85165 0.84199 0.77928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.01 13.96 55.43 0.77 -26.23 15 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 15 3 Si 0.87 21.38 27.47 -169.99 -4.67 16.71 15 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 15 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 15 6 H -0.26 -6.14 6.54 56.52 0.37 -5.77 15 7 C -0.53 -14.15 8.58 -34.44 -0.30 -14.45 15 8 H 0.08 2.20 7.87 -52.49 -0.41 1.79 15 9 C -0.02 -0.49 3.10 -27.88 -0.09 -0.57 15 10 C -0.07 -1.34 2.43 -90.30 -0.22 -1.55 15 11 H 0.11 2.01 7.81 -51.93 -0.41 1.61 15 12 C -0.54 -8.64 6.65 37.79 0.25 -8.39 15 13 S 2.36 35.12 6.11 -107.50 -0.66 34.46 15 14 O -0.95 -16.04 18.17 -57.66 -1.05 -17.09 15 15 O -0.92 -17.20 17.67 -57.66 -1.02 -18.22 15 16 C -0.62 -7.04 7.05 37.79 0.27 -6.78 15 17 C 0.12 1.66 3.59 -26.42 -0.09 1.56 15 18 H 0.08 1.09 7.47 -51.93 -0.39 0.70 15 19 O -0.55 -7.36 13.06 -35.23 -0.46 -7.82 15 20 H 0.26 7.48 8.31 -40.82 -0.34 7.14 15 21 H 0.03 0.64 7.09 -51.93 -0.37 0.27 15 22 H 0.03 0.66 7.06 -51.93 -0.37 0.29 15 23 H 0.13 1.67 8.14 -51.93 -0.42 1.24 15 24 H 0.16 2.81 6.98 -51.93 -0.36 2.45 15 25 H 0.13 1.15 8.14 -51.93 -0.42 0.73 15 26 H 0.14 1.30 8.08 -51.93 -0.42 0.88 15 27 H 0.37 3.06 9.05 45.56 0.41 3.47 15 LS Contribution 240.07 15.07 3.62 3.62 Total: -1.00 -34.77 240.07 -6.06 -40.83 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -2.32 Total: 2.01 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: -0.28 Total: -28.28 kcal Atomic # 7 Polarization: -27.01 SS G_CDS: 0.77 Total: -26.23 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -2.53 Total: -43.12 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Atomic # 16 Polarization: 35.12 SS G_CDS: -0.66 Total: 34.46 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -34.77 -6.06 -40.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260794991.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.594 kcal (2) G-P(sol) polarization free energy of solvation -34.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds