Wall clock time and date at job start Mon Mar 30 2020 02:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99943 * 2 1 4 4 H 1.48501 * 109.46909 * 270.00032 * 3 2 1 5 5 H 1.48502 * 109.47125 * 29.99801 * 3 2 1 6 6 H 1.48499 * 109.46971 * 150.00165 * 3 2 1 7 7 C 1.37876 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99736 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47026 * 179.97438 * 9 7 2 11 11 H 1.09005 * 108.78209 * 307.85020 * 10 9 7 12 12 C 1.54210 * 108.92765 * 66.45195 * 10 9 7 13 13 S 1.83824 * 103.02487 * 95.60819 * 12 10 9 14 14 O 1.42099 * 109.81248 * 148.05534 * 13 12 10 15 15 O 1.42104 * 109.81143 * 282.41008 * 13 12 10 16 16 C 1.84413 * 94.03671 * 35.13684 * 13 12 10 17 17 C 1.52384 * 108.92722 * 189.24271 * 10 9 7 18 18 H 1.09000 * 108.92005 * 0.02562 * 17 10 9 19 19 O 1.42894 * 108.92490 * 118.64774 * 17 10 9 20 20 H 0.96997 * 120.00238 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47012 * 59.99769 * 9 7 2 22 22 H 1.08998 * 109.46795 * 299.99856 * 9 7 2 23 23 H 1.09002 * 110.73710 * 214.04262 * 12 10 9 24 24 H 1.09001 * 110.73680 * 337.17627 * 12 10 9 25 25 H 1.08998 * 110.73155 * 206.52859 * 16 13 12 26 26 H 1.09000 * 110.71356 * 83.23510 * 16 13 12 27 27 H 0.96701 * 114.00093 * 179.97438 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 -0.0001 11 1 3.5411 -3.1787 0.8145 12 6 3.6393 -3.3021 -1.3376 13 16 5.1540 -3.0846 -2.3563 14 8 5.2941 -4.1798 -3.2508 15 8 5.2206 -1.7507 -2.8415 16 6 6.3017 -3.2875 -0.9272 17 6 5.5275 -2.6283 0.2320 18 1 5.8629 -1.5969 0.3403 19 8 5.8142 -3.3367 1.4395 20 1 -0.4850 0.8400 -0.0004 21 1 3.8745 -0.6808 0.8905 22 1 3.8751 -0.6796 -0.8895 23 1 3.4198 -4.3600 -1.1934 24 1 2.7909 -2.7921 -1.7939 25 1 7.2412 -2.7659 -1.1098 26 1 6.4789 -4.3433 -0.7219 27 1 6.7554 -3.3769 1.6579 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260794991.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:57 Heat of formation + Delta-G solvation = -153.867499 kcal Electronic energy + Delta-G solvation = -13684.138140 eV Core-core repulsion = 11147.034847 eV Total energy + Delta-G solvation = -2537.103293 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.060 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.49177 -38.05827 -37.05332 -36.15768 -34.34044 -31.37490 -29.34203 -26.61269 -23.59763 -21.18503 -19.95578 -19.09080 -18.36817 -17.52327 -16.94048 -16.79372 -16.37187 -15.57465 -15.21349 -14.86108 -14.55598 -13.90749 -13.82544 -13.25491 -13.15492 -13.13222 -13.04721 -12.44062 -12.35173 -11.92773 -11.73684 -11.58400 -11.38697 -11.03589 -10.84785 -10.75367 -8.29080 -6.32339 -0.89636 1.36323 1.38599 1.47566 1.52037 2.36042 2.61903 2.97723 3.07573 3.17234 3.50443 3.79789 3.94228 4.06866 4.14030 4.54012 4.70151 4.82814 4.98823 4.99793 5.33798 5.44949 5.63259 6.26727 6.75441 6.93429 7.31906 8.86905 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.033973 B = 0.010640 C = 0.009690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.985413 B = 2630.881955 C = 2888.833204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.240 1.240 7 C -0.525 4.525 8 H 0.044 0.956 9 C -0.024 4.024 10 C -0.076 4.076 11 H 0.092 0.908 12 C -0.557 4.557 13 S 2.377 3.623 14 O -0.971 6.971 15 O -0.966 6.966 16 C -0.582 4.582 17 C 0.119 3.881 18 H 0.087 0.913 19 O -0.565 6.565 20 H 0.265 0.735 21 H 0.033 0.967 22 H 0.031 0.969 23 H 0.153 0.847 24 H 0.126 0.874 25 H 0.171 0.829 26 H 0.172 0.828 27 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.902 -6.030 0.293 17.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.191 4.191 3 Si 0.757 3.243 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.163 1.163 7 C -0.563 4.563 8 H 0.063 0.937 9 C -0.061 4.061 10 C -0.096 4.096 11 H 0.110 0.890 12 C -0.687 4.687 13 S 2.564 3.436 14 O -0.968 6.968 15 O -0.964 6.964 16 C -0.714 4.714 17 C 0.058 3.942 18 H 0.105 0.895 19 O -0.374 6.374 20 H 0.074 0.926 21 H 0.051 0.949 22 H 0.049 0.951 23 H 0.171 0.829 24 H 0.145 0.855 25 H 0.189 0.811 26 H 0.190 0.810 27 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 15.267 -5.813 -0.728 16.352 hybrid contribution -0.116 0.753 0.707 1.039 sum 15.151 -5.060 -0.021 15.973 Atomic orbital electron populations 1.70044 1.08135 1.28038 1.52721 1.25924 0.95543 1.03233 0.94393 0.85898 0.80080 0.79101 0.79204 1.19647 1.20941 1.16265 1.21409 0.91529 0.93359 1.49977 0.93747 1.19937 0.95013 0.93299 0.97893 1.21072 0.93791 0.97966 0.96772 0.88976 1.30346 1.18898 1.10403 1.09032 1.09310 0.81317 0.74071 0.78910 1.93540 1.85499 1.54749 1.63050 1.93587 1.85787 1.37215 1.79773 1.31061 1.13614 1.13000 1.13773 1.21932 0.91986 0.96195 0.84064 0.89546 1.86593 1.32478 1.77470 1.40857 0.92568 0.94856 0.95120 0.82917 0.85540 0.81129 0.80968 0.74940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.11 13.96 21.45 0.30 -58.81 15 2 C 0.01 0.35 5.47 84.65 0.46 0.82 15 3 Si 0.93 44.02 27.47 68.60 1.88 45.90 15 4 H -0.27 -12.64 7.11 99.48 0.71 -11.94 15 5 H -0.28 -13.12 7.11 99.48 0.71 -12.42 15 6 H -0.24 -10.22 6.54 99.48 0.65 -9.57 15 7 C -0.52 -29.12 8.58 25.60 0.22 -28.90 15 8 H 0.04 2.67 7.87 -2.91 -0.02 2.65 15 9 C -0.02 -1.06 3.10 29.85 0.09 -0.97 15 10 C -0.08 -2.62 2.43 -10.59 -0.03 -2.64 15 11 H 0.09 3.42 7.81 -2.38 -0.02 3.40 15 12 C -0.56 -17.57 6.65 72.39 0.48 -17.09 15 13 S 2.38 65.90 6.11 -56.49 -0.35 65.55 15 14 O -0.97 -31.05 18.17 -127.53 -2.32 -33.37 15 15 O -0.97 -34.82 17.67 -127.53 -2.25 -37.07 15 16 C -0.58 -10.01 7.05 72.39 0.51 -9.50 15 17 C 0.12 2.89 3.59 30.80 0.11 3.00 15 18 H 0.09 2.02 7.47 -2.39 -0.02 2.00 15 19 O -0.57 -12.44 13.06 -148.98 -1.95 -14.38 15 20 H 0.27 15.52 8.31 -92.71 -0.77 14.75 15 21 H 0.03 1.43 7.09 -2.39 -0.02 1.41 15 22 H 0.03 1.35 7.06 -2.39 -0.02 1.33 15 23 H 0.15 3.88 8.14 -2.39 -0.02 3.86 15 24 H 0.13 4.78 6.98 -2.39 -0.02 4.76 15 25 H 0.17 1.80 8.14 -2.39 -0.02 1.78 15 26 H 0.17 2.04 8.08 -2.39 -0.02 2.02 15 27 H 0.40 4.27 9.05 -74.06 -0.67 3.60 15 Total: -1.00 -77.44 240.07 -2.37 -79.81 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: 0.46 Total: 7.65 kcal Atomic # 6 Polarization: -57.14 SS G_CDS: 1.85 Total: -55.28 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: 0.30 Total: -58.81 kcal Atomic # 8 Polarization: -78.30 SS G_CDS: -6.52 Total: -84.82 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.88 Total: 45.90 kcal Atomic # 16 Polarization: 65.90 SS G_CDS: -0.35 Total: 65.55 kcal Total: -77.44 -2.37 -79.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260794991.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.056 kcal (2) G-P(sol) polarization free energy of solvation -77.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds