Wall clock time and date at job start Mon Mar 30 2020 02:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30786 * 1 3 3 Si 1.86807 * 119.99912 * 2 1 4 4 H 1.48500 * 109.47121 * 269.19526 * 3 2 1 5 5 H 1.48499 * 109.46909 * 29.19737 * 3 2 1 6 6 H 1.48492 * 109.47141 * 149.19539 * 3 2 1 7 7 C 1.40022 * 120.00262 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99531 * 345.48580 * 7 2 1 9 9 C 1.40932 * 120.00051 * 165.49249 * 7 2 1 10 10 C 1.35889 * 124.86183 * 331.24863 * 9 7 2 11 11 C 1.51056 * 107.76219 * 179.76160 * 10 9 7 12 12 C 1.50915 * 105.85341 * 0.38239 * 11 10 9 13 13 C 1.37757 * 132.62426 * 179.90378 * 12 11 10 14 14 C 1.38406 * 120.03041 * 179.70874 * 13 12 11 15 15 C 1.38312 * 120.09227 * 359.95959 * 14 13 12 16 16 C 1.38070 * 120.27592 * 0.04043 * 15 14 13 17 17 Cl 1.73603 * 120.03503 * 179.97438 * 16 15 14 18 18 C 1.39289 * 106.98900 * 359.62515 * 12 11 10 19 19 H 0.97000 * 120.00143 * 0.02562 * 1 2 3 20 20 H 1.08007 * 126.11747 * 0.04191 * 10 9 7 21 21 H 1.08994 * 110.48813 * 241.11927 * 11 10 9 22 22 H 1.08993 * 109.85543 * 119.31398 * 11 10 9 23 23 H 1.07999 * 119.98635 * 359.69105 * 13 12 11 24 24 H 1.08000 * 119.95233 * 179.97438 * 14 13 12 25 25 H 1.08002 * 119.85696 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 2.5064 2.0367 -1.3999 5 1 1.4309 2.6575 0.6830 6 1 3.5307 1.4453 0.7170 7 6 2.0080 -1.2126 -0.0005 8 1 1.4938 -2.1331 0.2335 9 6 3.3836 -1.2319 -0.3063 10 6 4.0119 -0.3396 -1.1161 11 6 5.4740 -0.7155 -1.1691 12 6 5.6166 -1.9404 -0.2992 13 6 6.6972 -2.7271 0.0343 14 6 6.5305 -3.8111 0.8785 15 6 5.2796 -4.1061 1.3896 16 6 4.1909 -3.3232 1.0608 17 17 2.6235 -3.6996 1.7054 18 6 4.3521 -2.2281 0.2090 19 1 -0.4850 0.8400 -0.0004 20 1 3.5495 0.4924 -1.6265 21 1 6.0906 0.0951 -0.7810 22 1 5.7596 -0.9477 -2.1951 23 1 7.6748 -2.4981 -0.3635 24 1 7.3784 -4.4273 1.1388 25 1 5.1539 -4.9527 2.0484 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260817811.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:46 Heat of formation + Delta-G solvation = 11.592239 kcal Electronic energy + Delta-G solvation = -12283.609278 eV Core-core repulsion = 10058.946070 eV Total energy + Delta-G solvation = -2224.663207 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 220.035 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.93731 -37.42943 -36.81062 -34.94553 -32.14315 -30.24291 -29.08651 -25.56211 -23.18510 -21.98338 -21.16044 -18.60814 -17.20802 -16.53951 -16.29556 -15.72016 -15.30223 -15.00808 -14.40252 -14.11725 -13.72630 -13.32807 -13.16319 -12.76336 -12.43667 -12.11810 -12.01823 -11.75146 -11.64828 -11.27768 -11.04860 -10.38242 -9.52519 -8.84011 -8.74337 -6.39438 0.10518 0.37802 1.24745 1.32637 1.41590 1.49328 1.80990 2.21256 2.77503 3.35715 3.74963 3.97589 4.11062 4.42537 4.48720 4.67489 4.88730 4.95339 4.99698 5.11916 5.21397 5.38541 5.48313 5.78073 5.90705 5.98861 6.06300 6.58828 6.81155 6.97687 8.32899 Molecular weight = 220.03amu Principal moments of inertia in cm(-1) A = 0.030225 B = 0.013367 C = 0.009738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.150972 B = 2094.205366 C = 2874.614964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.043 3.957 3 Si 0.969 3.031 4 H -0.263 1.263 5 H -0.290 1.290 6 H -0.255 1.255 7 C -0.466 4.466 8 H 0.073 0.927 9 C 0.051 3.949 10 C -0.399 4.399 11 C -0.021 4.021 12 C -0.102 4.102 13 C -0.101 4.101 14 C -0.105 4.105 15 C -0.124 4.124 16 C -0.040 4.040 17 Cl -0.084 7.084 18 C -0.084 4.084 19 H 0.287 0.713 20 H 0.112 0.888 21 H 0.085 0.915 22 H 0.093 0.907 23 H 0.161 0.839 24 H 0.175 0.825 25 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.079 -4.321 1.524 13.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.168 4.168 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.218 1.218 6 H -0.179 1.179 7 C -0.496 4.496 8 H 0.091 0.909 9 C 0.049 3.951 10 C -0.420 4.420 11 C -0.057 4.057 12 C -0.102 4.102 13 C -0.119 4.119 14 C -0.122 4.122 15 C -0.143 4.143 16 C -0.067 4.067 17 Cl -0.056 7.056 18 C -0.084 4.084 19 H 0.097 0.903 20 H 0.130 0.870 21 H 0.103 0.897 22 H 0.111 0.889 23 H 0.178 0.822 24 H 0.192 0.808 25 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 12.674 -4.291 1.609 13.477 hybrid contribution -0.917 0.699 0.110 1.158 sum 11.757 -3.592 1.719 12.413 Atomic orbital electron populations 1.69694 1.09005 1.30690 1.40051 1.26720 0.95305 1.03857 0.90945 0.85402 0.78925 0.76840 0.79349 1.18918 1.21764 1.17886 1.19378 0.92820 0.95629 1.41771 0.90933 1.18226 0.91910 0.92223 0.92774 1.23311 0.96561 1.08748 1.13421 1.19397 0.94784 0.93248 0.98265 1.20954 0.92848 0.98069 0.98366 1.20851 0.98297 0.94467 0.98280 1.21461 0.96813 0.97387 0.96578 1.21204 0.91296 0.99939 1.01850 1.21176 0.87261 0.97888 1.00362 1.98333 1.28325 1.93696 1.85205 1.20244 0.96324 0.94931 0.96932 0.90262 0.87022 0.89679 0.88933 0.82187 0.80778 0.83054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -50.41 13.93 21.84 0.30 -50.11 15 2 C 0.04 2.46 5.49 85.28 0.47 2.92 15 3 Si 0.97 45.94 24.71 68.60 1.69 47.64 15 4 H -0.26 -11.90 6.56 99.48 0.65 -11.25 15 5 H -0.29 -13.08 7.11 99.48 0.71 -12.37 15 6 H -0.25 -12.16 6.90 99.48 0.69 -11.47 15 7 C -0.47 -27.06 9.02 23.36 0.21 -26.85 15 8 H 0.07 4.46 6.17 -2.91 -0.02 4.44 15 9 C 0.05 2.66 5.31 -20.52 -0.11 2.55 15 10 C -0.40 -19.08 8.45 25.25 0.21 -18.87 15 11 C -0.02 -0.79 6.73 29.28 0.20 -0.60 15 12 C -0.10 -3.82 6.33 -19.66 -0.12 -3.95 15 13 C -0.10 -2.79 10.03 22.20 0.22 -2.56 15 14 C -0.10 -2.58 10.05 22.33 0.22 -2.35 15 15 C -0.12 -3.79 9.81 22.25 0.22 -3.58 15 16 C -0.04 -1.65 6.35 22.58 0.14 -1.50 15 17 Cl -0.08 -3.62 26.26 -2.72 -0.07 -3.69 15 18 C -0.08 -3.80 6.11 -20.04 -0.12 -3.92 15 19 H 0.29 15.21 8.30 -92.71 -0.77 14.45 15 20 H 0.11 5.43 4.93 -2.91 -0.01 5.41 15 21 H 0.09 2.86 8.14 -2.39 -0.02 2.84 15 22 H 0.09 3.04 8.14 -2.39 -0.02 3.02 15 23 H 0.16 3.09 8.06 -2.91 -0.02 3.07 15 24 H 0.17 2.62 8.06 -2.91 -0.02 2.59 15 25 H 0.15 3.72 8.06 -2.91 -0.02 3.70 15 Total: -1.00 -65.04 228.99 4.61 -60.44 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: 1.14 Total: 4.42 kcal Atomic # 6 Polarization: -60.25 SS G_CDS: 1.54 Total: -58.71 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 0.30 Total: -50.11 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.69 Total: 47.64 kcal Atomic # 17 Polarization: -3.62 SS G_CDS: -0.07 Total: -3.69 kcal Total: -65.04 4.61 -60.44 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260817811.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.031 kcal (2) G-P(sol) polarization free energy of solvation -65.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds