Wall clock time and date at job start Mon Mar 30 2020 02:27:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53001 * 109.47067 * 2 1
4 4 H 1.08996 * 109.47310 * 305.00125 * 3 2 1
5 5 N 1.46905 * 109.47027 * 64.99917 * 3 2 1
6 6 C 1.50703 * 109.47072 * 184.99770 * 3 2 1
7 7 C 1.38252 * 119.99959 * 264.99973 * 6 3 2
8 8 C 1.38217 * 119.99729 * 179.97438 * 7 6 3
9 9 C 1.38253 * 120.00180 * 0.02562 * 8 7 6
10 10 C 1.38216 * 119.99688 * 359.97438 * 9 8 7
11 11 C 1.38213 * 119.99611 * 84.72709 * 6 3 2
12 12 C 1.50698 * 120.00398 * 0.02562 * 11 6 3
13 13 C 1.50699 * 109.47427 * 84.99308 * 12 11 6
14 14 H 1.07994 * 120.00023 * 0.02562 * 13 12 11
15 15 C 1.37879 * 120.00208 * 179.97438 * 13 12 11
16 16 N 1.31519 * 119.99586 * 0.02562 * 15 13 12
17 17 Si 1.86792 * 120.00125 * 180.02562 * 15 13 12
18 18 H 1.48498 * 109.47255 * 0.02562 * 17 15 13
19 19 H 1.48506 * 109.46860 * 120.00348 * 17 15 13
20 20 H 1.48503 * 109.47465 * 240.00462 * 17 15 13
21 21 H 1.08999 * 109.47124 * 299.99874 * 1 2 3
22 22 H 1.09002 * 109.47073 * 60.00168 * 1 2 3
23 23 H 1.08998 * 109.47040 * 180.02562 * 1 2 3
24 24 H 1.08999 * 109.47124 * 240.00126 * 2 1 3
25 25 H 1.09002 * 109.47073 * 119.99832 * 2 1 3
26 26 H 1.00901 * 110.99869 * 296.04819 * 5 3 2
27 27 H 1.00896 * 110.99543 * 59.99942 * 5 3 2
28 28 H 1.07997 * 120.00065 * 0.02562 * 7 6 3
29 29 H 1.08002 * 119.99718 * 180.02562 * 8 7 6
30 30 H 1.08001 * 120.00469 * 179.97438 * 9 8 7
31 31 H 1.07999 * 119.99557 * 179.97438 * 10 9 8
32 32 H 1.09000 * 109.47577 * 205.00122 * 12 11 6
33 33 H 1.09004 * 109.47093 * 324.99745 * 12 11 6
34 34 H 0.97000 * 119.99605 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9816 -0.8418
5 7 1.6514 2.0993 1.2553
6 6 3.5420 1.4443 -0.1238
7 6 4.3290 1.5148 1.0107
8 6 5.7065 1.5159 0.8971
9 6 6.2973 1.4471 -0.3509
10 6 5.5104 1.3766 -1.4850
11 6 4.1326 1.3698 -1.3711
12 6 3.2748 1.2873 -2.6074
13 6 2.8784 2.6762 -3.0374
14 1 3.2144 3.5330 -2.4723
15 6 2.0876 2.8532 -4.1530
16 7 1.6788 1.8098 -4.8414
17 14 1.5969 4.5748 -4.6864
18 1 2.1823 5.5685 -3.7510
19 1 2.1021 4.8304 -6.0593
20 1 0.1168 4.6941 -4.6734
21 1 -0.3633 0.5138 0.8900
22 1 -0.3633 0.5138 -0.8900
23 1 -0.3633 -1.0276 0.0005
24 1 1.8934 -0.5138 -0.8900
25 1 1.8934 -0.5138 0.8900
26 1 0.6476 2.1683 1.3315
27 1 2.0422 1.6179 2.0512
28 1 3.8674 1.5682 1.9856
29 1 6.3213 1.5706 1.7834
30 1 7.3737 1.4484 -0.4397
31 1 5.9720 1.3232 -2.4599
32 1 3.8362 0.8054 -3.4078
33 1 2.3793 0.7049 -2.3901
34 1 1.1222 1.9343 -5.6260
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260830382.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:27:10
Heat of formation + Delta-G solvation = 2.352536 kcal
Electronic energy + Delta-G solvation = -14879.606534 eV
Core-core repulsion = 12583.218350 eV
Total energy + Delta-G solvation = -2296.388184 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 219.132 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-39.11480 -35.87837 -33.45307 -31.25074 -30.77445 -29.56683 -27.01840 -25.04034
-23.22749 -21.77623 -20.34794 -19.49737 -16.46985 -16.17095 -15.34362 -14.67925
-14.36623 -14.12309 -13.91539 -13.75253 -12.76800 -12.56018 -12.35014 -11.99969
-11.67376 -11.38869 -11.28943 -11.10687 -10.80404 -10.70904 -10.53295 -10.33659
-9.96276 -9.45982 -9.32895 -8.41370 -8.38200 -8.02940 -7.64382 -6.03506
-4.06347 2.10120 2.20990 3.30156 3.38216 3.44812 4.40241 4.57111
5.03678 5.26430 5.30785 5.43808 5.47725 5.55162 5.67973 5.75121
5.99199 6.05302 6.17425 6.24794 6.33927 6.40834 6.54894 6.61897
6.78068 6.89078 7.11778 7.23335 7.30882 7.51499 7.62850 7.78722
7.85199 7.89375 7.93844 8.34352 8.99786 9.57397 11.05979
Molecular weight = 219.13amu
Principal moments of inertia in cm(-1)
A = 0.021632 B = 0.010968 C = 0.008601
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1294.069055 B = 2552.358110 C = 3254.571502
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.151 4.151
3 C 0.128 3.872
4 H 0.115 0.885
5 N -0.840 5.840
6 C -0.076 4.076
7 C -0.111 4.111
8 C -0.152 4.152
9 C -0.128 4.128
10 C -0.127 4.127
11 C -0.033 4.033
12 C 0.045 3.955
13 C -0.506 4.506
14 H 0.058 0.942
15 C 0.059 3.941
16 N -0.894 5.894
17 Si 0.891 3.109
18 H -0.271 1.271
19 H -0.284 1.284
20 H -0.284 1.284
21 H 0.046 0.954
22 H 0.063 0.937
23 H 0.050 0.950
24 H 0.074 0.926
25 H 0.051 0.949
26 H 0.337 0.663
27 H 0.329 0.671
28 H 0.111 0.889
29 H 0.107 0.893
30 H 0.108 0.892
31 H 0.116 0.884
32 H 0.025 0.975
33 H 0.034 0.966
34 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.418 -3.018 10.143 10.677
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.190 4.190
3 C 0.017 3.983
4 H 0.133 0.867
5 N -0.369 5.369
6 C -0.076 4.076
7 C -0.129 4.129
8 C -0.170 4.170
9 C -0.146 4.146
10 C -0.145 4.145
11 C -0.033 4.033
12 C 0.008 3.992
13 C -0.544 4.544
14 H 0.076 0.924
15 C -0.142 4.142
16 N -0.533 5.533
17 Si 0.719 3.281
18 H -0.196 1.196
19 H -0.210 1.210
20 H -0.210 1.210
21 H 0.065 0.935
22 H 0.082 0.918
23 H 0.069 0.931
24 H 0.093 0.907
25 H 0.070 0.930
26 H 0.150 0.850
27 H 0.142 0.858
28 H 0.129 0.871
29 H 0.125 0.875
30 H 0.126 0.874
31 H 0.134 0.866
32 H 0.044 0.956
33 H 0.052 0.948
34 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges 1.699 -2.420 9.710 10.150
hybrid contribution -0.669 0.028 -0.169 0.691
sum 1.030 -2.392 9.541 9.890
Atomic orbital electron populations
1.21783 0.96043 1.01273 1.01779 1.22283 0.95817 0.98646 1.02250
1.20460 0.91975 0.92361 0.93494 0.86685 1.59020 1.15654 1.58288
1.03981 1.19557 0.94500 1.00866 0.92718 1.20767 0.93334 1.01034
0.97802 1.20835 0.94730 1.04579 0.96841 1.20990 0.98847 1.01813
0.92983 1.21045 0.93696 1.01809 0.97948 1.20506 0.94110 0.92757
0.95972 1.18418 0.94031 0.97832 0.88892 1.21071 1.30825 0.91863
1.10620 0.92398 1.24986 0.96045 0.96805 0.96382 1.69970 1.35978
1.29112 1.18226 0.86532 0.78232 0.84823 0.78507 1.19584 1.21033
1.20992 0.93522 0.91806 0.93092 0.90720 0.93032 0.85013 0.85827
0.87109 0.87467 0.87360 0.86636 0.95649 0.94780 0.92995
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.17 9.68 37.16 0.36 -1.81 16
2 C -0.15 -2.45 5.33 -26.73 -0.14 -2.59 16
3 C 0.13 2.34 2.36 -68.86 -0.16 2.18 16
4 H 0.12 2.54 6.43 -51.93 -0.33 2.21 16
5 N -0.84 -12.91 8.78 -5.65 -0.05 -12.96 16
6 C -0.08 -1.50 5.06 -104.62 -0.53 -2.03 16
7 C -0.11 -1.94 9.27 -39.58 -0.37 -2.31 16
8 C -0.15 -2.52 10.05 -39.58 -0.40 -2.92 16
9 C -0.13 -2.23 10.05 -39.58 -0.40 -2.63 16
10 C -0.13 -2.56 9.68 -39.58 -0.38 -2.94 16
11 C -0.03 -0.73 5.07 -104.63 -0.53 -1.26 16
12 C 0.04 1.14 4.43 -29.04 -0.13 1.01 16
13 C -0.51 -13.98 8.30 -34.44 -0.29 -14.27 16
14 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16
15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16
16 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16
17 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16
18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16
19 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16
20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
21 H 0.05 0.57 6.87 -51.93 -0.36 0.21 16
22 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16
23 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16
24 H 0.07 1.36 6.89 -51.93 -0.36 1.00 16
25 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16
26 H 0.34 4.57 7.55 -39.29 -0.30 4.28 16
27 H 0.33 4.38 7.21 -39.29 -0.28 4.10 16
28 H 0.11 1.67 6.29 -52.49 -0.33 1.34 16
29 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16
30 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16
31 H 0.12 2.25 8.06 -52.49 -0.42 1.82 16
32 H 0.03 0.68 8.05 -51.93 -0.42 0.26 16
33 H 0.03 0.88 5.66 -51.93 -0.29 0.59 16
34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16
LS Contribution 277.25 15.07 4.18 4.18
Total: -1.00 -29.17 277.25 -7.97 -37.14
By element:
Atomic # 1 Polarization: 13.02 SS G_CDS: -4.75 Total: 8.28 kcal
Atomic # 6 Polarization: -24.95 SS G_CDS: -3.06 Total: -28.01 kcal
Atomic # 7 Polarization: -38.83 SS G_CDS: 0.69 Total: -38.14 kcal
Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal
Total LS contribution 4.18 Total: 4.18 kcal
Total: -29.17 -7.97 -37.14 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260830382.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.489 kcal
(2) G-P(sol) polarization free energy of solvation -29.171 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.319 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.137 kcal
(6) G-S(sol) free energy of system = (1) + (5) 2.353 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds