Wall clock time and date at job start Mon Mar 30 2020 02:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47067 * 2 1 4 4 H 1.08996 * 109.47310 * 305.00125 * 3 2 1 5 5 N 1.46905 * 109.47027 * 64.99917 * 3 2 1 6 6 C 1.50703 * 109.47072 * 184.99770 * 3 2 1 7 7 C 1.38252 * 119.99959 * 264.99973 * 6 3 2 8 8 C 1.38217 * 119.99729 * 179.97438 * 7 6 3 9 9 C 1.38253 * 120.00180 * 0.02562 * 8 7 6 10 10 C 1.38216 * 119.99688 * 359.97438 * 9 8 7 11 11 C 1.38213 * 119.99611 * 84.72709 * 6 3 2 12 12 C 1.50698 * 120.00398 * 0.02562 * 11 6 3 13 13 C 1.50699 * 109.47427 * 84.99308 * 12 11 6 14 14 H 1.07994 * 120.00023 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00208 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99586 * 0.02562 * 15 13 12 17 17 Si 1.86792 * 120.00125 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47255 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46860 * 120.00348 * 17 15 13 20 20 H 1.48503 * 109.47465 * 240.00462 * 17 15 13 21 21 H 1.08999 * 109.47124 * 299.99874 * 1 2 3 22 22 H 1.09002 * 109.47073 * 60.00168 * 1 2 3 23 23 H 1.08998 * 109.47040 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47124 * 240.00126 * 2 1 3 25 25 H 1.09002 * 109.47073 * 119.99832 * 2 1 3 26 26 H 1.00901 * 110.99869 * 296.04819 * 5 3 2 27 27 H 1.00896 * 110.99543 * 59.99942 * 5 3 2 28 28 H 1.07997 * 120.00065 * 0.02562 * 7 6 3 29 29 H 1.08002 * 119.99718 * 180.02562 * 8 7 6 30 30 H 1.08001 * 120.00469 * 179.97438 * 9 8 7 31 31 H 1.07999 * 119.99557 * 179.97438 * 10 9 8 32 32 H 1.09000 * 109.47577 * 205.00122 * 12 11 6 33 33 H 1.09004 * 109.47093 * 324.99745 * 12 11 6 34 34 H 0.97000 * 119.99605 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 7 1.6514 2.0993 1.2553 6 6 3.5420 1.4443 -0.1238 7 6 4.3290 1.5148 1.0107 8 6 5.7065 1.5159 0.8971 9 6 6.2973 1.4471 -0.3509 10 6 5.5104 1.3766 -1.4850 11 6 4.1326 1.3698 -1.3711 12 6 3.2748 1.2873 -2.6074 13 6 2.8784 2.6762 -3.0374 14 1 3.2144 3.5330 -2.4723 15 6 2.0876 2.8532 -4.1530 16 7 1.6788 1.8098 -4.8414 17 14 1.5969 4.5748 -4.6864 18 1 2.1823 5.5685 -3.7510 19 1 2.1021 4.8304 -6.0593 20 1 0.1168 4.6941 -4.6734 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 0.6476 2.1683 1.3315 27 1 2.0422 1.6179 2.0512 28 1 3.8674 1.5682 1.9856 29 1 6.3213 1.5706 1.7834 30 1 7.3737 1.4484 -0.4397 31 1 5.9720 1.3232 -2.4599 32 1 3.8362 0.8054 -3.4078 33 1 2.3793 0.7049 -2.3901 34 1 1.1222 1.9343 -5.6260 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260830382.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:10 Heat of formation + Delta-G solvation = 2.352536 kcal Electronic energy + Delta-G solvation = -14879.606534 eV Core-core repulsion = 12583.218350 eV Total energy + Delta-G solvation = -2296.388184 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.11480 -35.87837 -33.45307 -31.25074 -30.77445 -29.56683 -27.01840 -25.04034 -23.22749 -21.77623 -20.34794 -19.49737 -16.46985 -16.17095 -15.34362 -14.67925 -14.36623 -14.12309 -13.91539 -13.75253 -12.76800 -12.56018 -12.35014 -11.99969 -11.67376 -11.38869 -11.28943 -11.10687 -10.80404 -10.70904 -10.53295 -10.33659 -9.96276 -9.45982 -9.32895 -8.41370 -8.38200 -8.02940 -7.64382 -6.03506 -4.06347 2.10120 2.20990 3.30156 3.38216 3.44812 4.40241 4.57111 5.03678 5.26430 5.30785 5.43808 5.47725 5.55162 5.67973 5.75121 5.99199 6.05302 6.17425 6.24794 6.33927 6.40834 6.54894 6.61897 6.78068 6.89078 7.11778 7.23335 7.30882 7.51499 7.62850 7.78722 7.85199 7.89375 7.93844 8.34352 8.99786 9.57397 11.05979 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.021632 B = 0.010968 C = 0.008601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.069055 B = 2552.358110 C = 3254.571502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.151 4.151 3 C 0.128 3.872 4 H 0.115 0.885 5 N -0.840 5.840 6 C -0.076 4.076 7 C -0.111 4.111 8 C -0.152 4.152 9 C -0.128 4.128 10 C -0.127 4.127 11 C -0.033 4.033 12 C 0.045 3.955 13 C -0.506 4.506 14 H 0.058 0.942 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.891 3.109 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.284 1.284 21 H 0.046 0.954 22 H 0.063 0.937 23 H 0.050 0.950 24 H 0.074 0.926 25 H 0.051 0.949 26 H 0.337 0.663 27 H 0.329 0.671 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.025 0.975 33 H 0.034 0.966 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.418 -3.018 10.143 10.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.190 4.190 3 C 0.017 3.983 4 H 0.133 0.867 5 N -0.369 5.369 6 C -0.076 4.076 7 C -0.129 4.129 8 C -0.170 4.170 9 C -0.146 4.146 10 C -0.145 4.145 11 C -0.033 4.033 12 C 0.008 3.992 13 C -0.544 4.544 14 H 0.076 0.924 15 C -0.142 4.142 16 N -0.533 5.533 17 Si 0.719 3.281 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.210 1.210 21 H 0.065 0.935 22 H 0.082 0.918 23 H 0.069 0.931 24 H 0.093 0.907 25 H 0.070 0.930 26 H 0.150 0.850 27 H 0.142 0.858 28 H 0.129 0.871 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.134 0.866 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.699 -2.420 9.710 10.150 hybrid contribution -0.669 0.028 -0.169 0.691 sum 1.030 -2.392 9.541 9.890 Atomic orbital electron populations 1.21783 0.96043 1.01273 1.01779 1.22283 0.95817 0.98646 1.02250 1.20460 0.91975 0.92361 0.93494 0.86685 1.59020 1.15654 1.58288 1.03981 1.19557 0.94500 1.00866 0.92718 1.20767 0.93334 1.01034 0.97802 1.20835 0.94730 1.04579 0.96841 1.20990 0.98847 1.01813 0.92983 1.21045 0.93696 1.01809 0.97948 1.20506 0.94110 0.92757 0.95972 1.18418 0.94031 0.97832 0.88892 1.21071 1.30825 0.91863 1.10620 0.92398 1.24986 0.96045 0.96805 0.96382 1.69970 1.35978 1.29112 1.18226 0.86532 0.78232 0.84823 0.78507 1.19584 1.21033 1.20992 0.93522 0.91806 0.93092 0.90720 0.93032 0.85013 0.85827 0.87109 0.87467 0.87360 0.86636 0.95649 0.94780 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.68 37.16 0.36 -1.81 16 2 C -0.15 -2.45 5.33 -26.73 -0.14 -2.59 16 3 C 0.13 2.34 2.36 -68.86 -0.16 2.18 16 4 H 0.12 2.54 6.43 -51.93 -0.33 2.21 16 5 N -0.84 -12.91 8.78 -5.65 -0.05 -12.96 16 6 C -0.08 -1.50 5.06 -104.62 -0.53 -2.03 16 7 C -0.11 -1.94 9.27 -39.58 -0.37 -2.31 16 8 C -0.15 -2.52 10.05 -39.58 -0.40 -2.92 16 9 C -0.13 -2.23 10.05 -39.58 -0.40 -2.63 16 10 C -0.13 -2.56 9.68 -39.58 -0.38 -2.94 16 11 C -0.03 -0.73 5.07 -104.63 -0.53 -1.26 16 12 C 0.04 1.14 4.43 -29.04 -0.13 1.01 16 13 C -0.51 -13.98 8.30 -34.44 -0.29 -14.27 16 14 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16 17 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H 0.05 0.57 6.87 -51.93 -0.36 0.21 16 22 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.07 1.36 6.89 -51.93 -0.36 1.00 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.34 4.57 7.55 -39.29 -0.30 4.28 16 27 H 0.33 4.38 7.21 -39.29 -0.28 4.10 16 28 H 0.11 1.67 6.29 -52.49 -0.33 1.34 16 29 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.12 2.25 8.06 -52.49 -0.42 1.82 16 32 H 0.03 0.68 8.05 -51.93 -0.42 0.26 16 33 H 0.03 0.88 5.66 -51.93 -0.29 0.59 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 277.25 15.07 4.18 4.18 Total: -1.00 -29.17 277.25 -7.97 -37.14 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -4.75 Total: 8.28 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: -3.06 Total: -28.01 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.69 Total: -38.14 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.17 -7.97 -37.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260830382.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.489 kcal (2) G-P(sol) polarization free energy of solvation -29.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds