Wall clock time and date at job start Mon Mar 30 2020 02:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31300 * 1 3 3 Si 1.86799 * 119.99704 * 2 1 4 4 H 1.48512 * 109.47223 * 240.00028 * 3 2 1 5 5 H 1.48502 * 109.47168 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47392 * 120.00291 * 3 2 1 7 7 C 1.38969 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99810 * 180.02562 * 7 2 1 9 9 N 1.37331 * 120.00015 * 359.97438 * 7 2 1 10 10 C 1.36510 * 126.07978 * 180.02562 * 9 7 2 11 11 C 1.35564 * 107.52014 * 179.97438 * 10 9 7 12 12 O 1.36126 * 126.06790 * 180.02562 * 11 10 9 13 13 C 1.35720 * 118.00350 * 179.97438 * 12 11 10 14 14 C 1.35192 * 125.84556 * 179.97438 * 13 12 11 15 15 C 1.41414 * 106.78810 * 180.02562 * 14 13 12 16 16 C 1.34466 * 106.90580 * 359.97438 * 15 14 13 17 17 O 1.34358 * 125.84510 * 359.69465 * 13 12 11 18 18 C 1.40555 * 107.87236 * 359.97438 * 11 10 9 19 19 N 1.30930 * 108.39629 * 359.97438 * 18 11 10 20 20 H 0.97000 * 120.00417 * 0.02562 * 1 2 3 21 21 H 1.07994 * 126.24472 * 0.02562 * 10 9 7 22 22 H 1.07993 * 126.61143 * 0.02562 * 14 13 12 23 23 H 1.07995 * 126.54774 * 180.02562 * 15 14 13 24 24 H 1.08005 * 125.73829 * 180.02562 * 16 15 14 25 25 H 1.07999 * 125.80304 * 179.74111 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.1007 1.6965 -1.2126 5 1 1.2818 2.7465 -0.0006 6 1 3.1007 1.6965 1.2124 7 6 2.0079 -1.2035 -0.0005 8 1 3.0880 -1.2034 -0.0001 9 7 1.3213 -2.3928 -0.0005 10 6 1.8748 -3.6407 -0.0005 11 6 0.8586 -4.5379 0.0000 12 8 0.9861 -5.8932 0.0007 13 6 -0.1472 -6.6399 0.0018 14 6 -0.2054 -7.9905 0.0021 15 6 -1.5756 -8.3403 0.0026 16 6 -2.2727 -7.1905 0.0032 17 8 -1.4034 -6.1633 0.0080 18 6 -0.3501 -3.8206 0.0010 19 7 -0.0715 -2.5413 0.0016 20 1 -0.4851 0.8400 -0.0004 21 1 2.9299 -3.8711 -0.0001 22 1 0.6329 -8.6713 0.0019 23 1 -1.9841 -9.3400 0.0034 24 1 -3.3494 -7.1055 0.0041 25 1 -1.3405 -4.2515 -0.0023 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260872443.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:44 Heat of formation + Delta-G solvation = 76.074885 kcal Electronic energy + Delta-G solvation = -14107.366849 eV Core-core repulsion = 11477.083406 eV Total energy + Delta-G solvation = -2630.283444 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.063 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.25767 -39.81989 -37.67791 -33.57338 -32.70741 -30.43661 -29.07684 -27.44731 -25.07868 -21.83059 -21.73001 -20.48500 -19.73266 -18.51145 -16.70209 -16.25732 -15.95799 -15.43175 -14.47819 -14.10671 -14.08622 -13.31886 -12.85262 -12.73502 -12.34660 -12.10782 -11.78192 -11.34552 -11.24333 -10.93870 -10.61324 -9.68738 -9.47998 -9.00682 -8.30421 -8.06630 -6.87272 -6.66979 -4.37567 2.14929 2.87993 2.96208 2.96692 3.01436 3.04561 3.45804 3.62208 3.93757 4.05063 4.70021 4.90823 5.24607 5.35521 5.93338 6.04227 6.14241 6.19114 6.42628 6.60679 6.80209 6.81142 7.07248 7.40603 7.51886 7.85671 8.32448 8.55941 9.19372 9.43303 10.29134 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.086617 B = 0.006452 C = 0.006017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 323.185680 B = 4338.966331 C = 4652.308599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.046 3.954 3 Si 0.939 3.061 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.321 4.321 8 H 0.121 0.879 9 N -0.135 5.135 10 C -0.057 4.057 11 C -0.123 4.123 12 O -0.180 6.180 13 C 0.217 3.783 14 C -0.266 4.266 15 C -0.183 4.183 16 C -0.076 4.076 17 O -0.190 6.190 18 C -0.071 4.071 19 N -0.248 5.248 20 H 0.277 0.723 21 H 0.158 0.842 22 H 0.149 0.851 23 H 0.148 0.852 24 H 0.200 0.800 25 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.940 -7.647 -0.001 7.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.171 4.171 3 Si 0.762 3.238 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.190 1.190 7 C -0.453 4.453 8 H 0.138 0.862 9 N 0.095 4.905 10 C -0.206 4.206 11 C -0.177 4.177 12 O -0.088 6.088 13 C 0.121 3.879 14 C -0.286 4.286 15 C -0.202 4.202 16 C -0.141 4.141 17 O -0.090 6.090 18 C -0.245 4.245 19 N -0.080 5.080 20 H 0.088 0.912 21 H 0.175 0.825 22 H 0.167 0.833 23 H 0.165 0.835 24 H 0.217 0.783 25 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.488 -6.093 0.002 6.272 hybrid contribution 0.612 -0.296 0.001 0.680 sum -0.876 -6.389 0.003 6.449 Atomic orbital electron populations 1.70194 1.06224 1.28420 1.34745 1.25681 0.95779 1.00432 0.95252 0.85822 0.79127 0.79168 0.79652 1.18992 1.20040 1.18990 1.19937 0.91877 0.80164 1.53319 0.86159 1.44565 1.03788 1.03315 1.38798 1.20897 0.96992 0.84162 1.18535 1.18306 0.94930 0.79217 1.25268 1.84459 1.21225 1.17005 1.86127 1.20640 0.77902 0.89297 1.00036 1.20597 0.97978 0.90607 1.19399 1.21467 0.92535 0.99074 1.07148 1.23706 0.94992 0.84468 1.10970 1.84253 1.15332 1.36357 1.73067 1.24183 0.96995 0.92306 1.11029 1.78214 0.90469 1.14196 1.25165 0.91195 0.82508 0.83284 0.83451 0.78332 0.81288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.05 11.81 55.49 0.66 -20.40 15 2 C 0.05 1.17 5.50 -17.51 -0.10 1.07 15 3 Si 0.94 18.53 29.55 -169.99 -5.02 13.51 15 4 H -0.27 -5.09 7.11 56.52 0.40 -4.68 15 5 H -0.28 -5.37 7.11 56.52 0.40 -4.97 15 6 H -0.27 -5.09 7.11 56.52 0.40 -4.68 15 7 C -0.32 -8.42 10.25 -14.82 -0.15 -8.57 15 8 H 0.12 2.79 7.83 -52.48 -0.41 2.38 15 9 N -0.14 -3.74 3.74 -11.43 -0.04 -3.79 15 10 C -0.06 -1.42 11.49 -16.42 -0.19 -1.61 15 11 C -0.12 -3.04 6.95 -39.66 -0.28 -3.32 15 12 O -0.18 -4.02 10.22 -26.91 -0.27 -4.29 15 13 C 0.22 4.30 7.82 29.65 0.23 4.53 15 14 C -0.27 -4.37 10.94 -39.46 -0.43 -4.80 15 15 C -0.18 -2.55 10.90 -39.71 -0.43 -2.98 15 16 C -0.08 -1.10 12.08 29.40 0.36 -0.74 15 17 O -0.19 -3.62 7.16 -18.30 -0.13 -3.75 15 18 C -0.07 -1.85 10.87 -17.06 -0.19 -2.04 15 19 N -0.25 -7.14 10.40 30.78 0.32 -6.82 15 20 H 0.28 6.92 8.31 -40.82 -0.34 6.58 15 21 H 0.16 3.33 8.06 -52.49 -0.42 2.90 15 22 H 0.15 2.14 8.06 -52.49 -0.42 1.71 15 23 H 0.15 1.53 8.06 -52.49 -0.42 1.11 15 24 H 0.20 2.02 8.06 -52.48 -0.42 1.60 15 25 H 0.17 4.03 5.56 -52.49 -0.29 3.74 15 LS Contribution 234.93 15.07 3.54 3.54 Total: -1.00 -31.10 234.93 -3.66 -34.76 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -1.53 Total: 5.69 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -1.18 Total: -18.45 kcal Atomic # 7 Polarization: -31.94 SS G_CDS: 0.93 Total: -31.01 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: -0.41 Total: -8.04 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.02 Total: 13.51 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -31.10 -3.66 -34.76 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260872443.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.836 kcal (2) G-P(sol) polarization free energy of solvation -31.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds