Wall clock time and date at job start Mon Mar 30 2020 02:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31300 * 1 3 3 Si 1.86799 * 119.99704 * 2 1 4 4 H 1.48512 * 109.47223 * 240.00028 * 3 2 1 5 5 H 1.48502 * 109.47168 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47392 * 120.00291 * 3 2 1 7 7 C 1.38969 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99810 * 180.02562 * 7 2 1 9 9 N 1.37331 * 120.00015 * 359.97438 * 7 2 1 10 10 C 1.36510 * 126.07978 * 180.02562 * 9 7 2 11 11 C 1.35564 * 107.52014 * 179.97438 * 10 9 7 12 12 O 1.36126 * 126.06790 * 180.02562 * 11 10 9 13 13 C 1.35720 * 118.00350 * 179.97438 * 12 11 10 14 14 C 1.35192 * 125.84556 * 179.97438 * 13 12 11 15 15 C 1.41414 * 106.78810 * 180.02562 * 14 13 12 16 16 C 1.34466 * 106.90580 * 359.97438 * 15 14 13 17 17 O 1.34358 * 125.84510 * 359.69465 * 13 12 11 18 18 C 1.40555 * 107.87236 * 359.97438 * 11 10 9 19 19 N 1.30930 * 108.39629 * 359.97438 * 18 11 10 20 20 H 0.97000 * 120.00417 * 0.02562 * 1 2 3 21 21 H 1.07994 * 126.24472 * 0.02562 * 10 9 7 22 22 H 1.07993 * 126.61143 * 0.02562 * 14 13 12 23 23 H 1.07995 * 126.54774 * 180.02562 * 15 14 13 24 24 H 1.08005 * 125.73829 * 180.02562 * 16 15 14 25 25 H 1.07999 * 125.80304 * 179.74111 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.1007 1.6965 -1.2126 5 1 1.2818 2.7465 -0.0006 6 1 3.1007 1.6965 1.2124 7 6 2.0079 -1.2035 -0.0005 8 1 3.0880 -1.2034 -0.0001 9 7 1.3213 -2.3928 -0.0005 10 6 1.8748 -3.6407 -0.0005 11 6 0.8586 -4.5379 0.0000 12 8 0.9861 -5.8932 0.0007 13 6 -0.1472 -6.6399 0.0018 14 6 -0.2054 -7.9905 0.0021 15 6 -1.5756 -8.3403 0.0026 16 6 -2.2727 -7.1905 0.0032 17 8 -1.4034 -6.1633 0.0080 18 6 -0.3501 -3.8206 0.0010 19 7 -0.0715 -2.5413 0.0016 20 1 -0.4851 0.8400 -0.0004 21 1 2.9299 -3.8711 -0.0001 22 1 0.6329 -8.6713 0.0019 23 1 -1.9841 -9.3400 0.0034 24 1 -3.3494 -7.1055 0.0041 25 1 -1.3405 -4.2515 -0.0023 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260872443.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:44 Heat of formation + Delta-G solvation = 56.307001 kcal Electronic energy + Delta-G solvation = -14108.224049 eV Core-core repulsion = 11477.083406 eV Total energy + Delta-G solvation = -2631.140643 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.063 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.59661 -41.71472 -39.35942 -35.47336 -34.01638 -32.41577 -30.71200 -29.04319 -27.00315 -23.38703 -23.29671 -22.15459 -21.32876 -20.27003 -18.31668 -17.72008 -17.69508 -17.10177 -16.09819 -15.84454 -15.77692 -15.08657 -14.54605 -14.13407 -13.68744 -13.53058 -13.37173 -13.19714 -12.82814 -12.77501 -12.13662 -11.35281 -11.00369 -10.86904 -10.29517 -9.63741 -8.58327 -8.55945 -6.36939 0.80330 1.23226 1.38208 1.55487 1.61454 1.66375 1.73768 1.99580 2.11469 2.33240 2.91183 2.99684 4.05220 4.18495 4.25658 4.49055 4.67100 4.77993 4.87858 5.00810 5.04579 5.18707 5.64135 5.68398 5.94198 6.07320 6.52720 6.73167 7.26466 7.43997 8.43411 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.086617 B = 0.006452 C = 0.006017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 323.185680 B = 4338.966331 C = 4652.308599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C -0.003 4.003 3 Si 1.024 2.976 4 H -0.253 1.253 5 H -0.274 1.274 6 H -0.253 1.253 7 C -0.353 4.353 8 H 0.144 0.856 9 N -0.155 5.155 10 C -0.068 4.068 11 C -0.115 4.115 12 O -0.193 6.193 13 C 0.156 3.844 14 C -0.243 4.243 15 C -0.181 4.181 16 C -0.070 4.070 17 O -0.217 6.217 18 C -0.084 4.084 19 N -0.295 5.295 20 H 0.281 0.719 21 H 0.189 0.811 22 H 0.169 0.831 23 H 0.190 0.810 24 H 0.241 0.759 25 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.649 -8.591 -0.001 8.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.216 4.216 3 Si 0.842 3.158 4 H -0.177 1.177 5 H -0.199 1.199 6 H -0.177 1.177 7 C -0.484 4.484 8 H 0.162 0.838 9 N 0.074 4.926 10 C -0.216 4.216 11 C -0.170 4.170 12 O -0.102 6.102 13 C 0.063 3.937 14 C -0.263 4.263 15 C -0.200 4.200 16 C -0.135 4.135 17 O -0.118 6.118 18 C -0.257 4.257 19 N -0.128 5.128 20 H 0.091 0.909 21 H 0.206 0.794 22 H 0.187 0.813 23 H 0.207 0.793 24 H 0.257 0.743 25 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -1.198 -7.091 0.002 7.192 hybrid contribution 0.401 -0.267 0.001 0.482 sum -0.797 -7.359 0.004 7.402 Atomic orbital electron populations 1.70355 1.08423 1.29708 1.36096 1.26943 0.96583 1.04343 0.93736 0.84582 0.77576 0.73247 0.80388 1.17663 1.19875 1.17656 1.20737 0.93261 0.80474 1.53955 0.83830 1.44870 1.03603 1.04489 1.39593 1.21512 0.98590 0.83603 1.17894 1.18410 0.94340 0.80676 1.23578 1.84398 1.23177 1.15447 1.87184 1.21023 0.77851 0.90016 1.04847 1.21161 1.00090 0.89390 1.15698 1.21959 0.90967 1.00836 1.06206 1.24742 0.96353 0.83840 1.08529 1.84183 1.15631 1.38436 1.73591 1.24440 0.98228 0.91944 1.11102 1.78107 0.91869 1.15711 1.27110 0.90898 0.79419 0.81316 0.79262 0.74289 0.80165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.02 11.81 21.66 0.26 -45.76 15 2 C 0.00 -0.18 5.50 84.95 0.47 0.29 15 3 Si 1.02 37.61 29.55 68.60 2.03 39.64 15 4 H -0.25 -8.70 7.11 99.48 0.71 -7.99 15 5 H -0.27 -9.86 7.11 99.48 0.71 -9.16 15 6 H -0.25 -8.70 7.11 99.48 0.71 -7.99 15 7 C -0.35 -18.73 10.25 84.01 0.86 -17.87 15 8 H 0.14 6.60 7.83 -2.91 -0.02 6.57 15 9 N -0.16 -8.81 3.74 -190.09 -0.71 -9.52 15 10 C -0.07 -3.43 11.49 83.35 0.96 -2.47 15 11 C -0.12 -5.85 6.95 22.22 0.15 -5.69 15 12 O -0.19 -8.73 10.22 -14.30 -0.15 -8.88 15 13 C 0.16 6.13 7.82 67.12 0.52 6.66 15 14 C -0.24 -7.47 10.94 22.35 0.24 -7.23 15 15 C -0.18 -4.37 10.90 22.19 0.24 -4.13 15 16 C -0.07 -1.84 12.08 66.96 0.81 -1.03 15 17 O -0.22 -8.18 7.16 16.51 0.12 -8.06 15 18 C -0.08 -4.51 10.87 85.39 0.93 -3.58 15 19 N -0.29 -17.62 10.40 -56.52 -0.59 -18.21 15 20 H 0.28 14.42 8.31 -92.71 -0.77 13.65 15 21 H 0.19 7.91 8.06 -2.91 -0.02 7.89 15 22 H 0.17 4.37 8.06 -2.91 -0.02 4.34 15 23 H 0.19 2.91 8.06 -2.91 -0.02 2.89 15 24 H 0.24 3.94 8.06 -2.91 -0.02 3.92 15 25 H 0.18 8.93 5.56 -2.91 -0.02 8.91 15 Total: -1.00 -70.18 234.93 7.36 -62.82 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 1.22 Total: 23.03 kcal Atomic # 6 Polarization: -40.24 SS G_CDS: 5.19 Total: -35.06 kcal Atomic # 7 Polarization: -72.45 SS G_CDS: -1.04 Total: -73.49 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.03 Total: -16.94 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 2.03 Total: 39.64 kcal Total: -70.18 7.36 -62.82 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260872443.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.125 kcal (2) G-P(sol) polarization free energy of solvation -70.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds