Wall clock time and date at job start Mon Mar 30 2020 02:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30791 * 1 3 3 Si 1.86799 * 119.99617 * 2 1 4 4 H 1.48499 * 109.47413 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47188 * 120.00192 * 3 2 1 6 6 H 1.48501 * 109.47026 * 240.00171 * 3 2 1 7 7 C 1.40020 * 120.00091 * 179.72673 * 2 1 3 8 8 H 1.08007 * 119.99530 * 156.97082 * 7 2 1 9 9 C 1.40933 * 120.00077 * 336.97368 * 7 2 1 10 10 C 1.35866 * 124.86034 * 339.37803 * 9 7 2 11 11 C 1.51056 * 107.76949 * 180.02562 * 10 9 7 12 12 C 1.50915 * 105.85525 * 0.02562 * 11 10 9 13 13 C 1.37776 * 132.61465 * 180.02562 * 12 11 10 14 14 C 1.38370 * 120.02220 * 179.97438 * 13 12 11 15 15 C 1.38460 * 120.06075 * 0.02562 * 14 13 12 16 16 Cl 1.73595 * 119.86603 * 179.97438 * 15 14 13 17 17 C 1.38050 * 120.26314 * 359.95193 * 15 14 13 18 18 C 1.39309 * 106.98881 * 359.72368 * 12 11 10 19 19 H 0.97000 * 119.99951 * 173.87186 * 1 2 3 20 20 H 1.08001 * 126.11699 * 0.02823 * 10 9 7 21 21 H 1.08993 * 110.17158 * 119.09614 * 11 10 9 22 22 H 1.08997 * 110.17046 * 240.83278 * 11 10 9 23 23 H 1.08004 * 119.99099 * 359.92710 * 13 12 11 24 24 H 1.07995 * 119.96879 * 179.97438 * 14 13 12 25 25 H 1.08005 * 120.03050 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 1.2768 2.7465 0.0006 5 1 3.0956 1.6965 1.2125 6 1 3.0955 1.6965 -1.2125 7 6 2.0080 -1.2126 0.0058 8 1 3.0235 -1.2515 -0.3600 9 6 1.3876 -2.3822 0.4888 10 6 0.3111 -2.4048 1.3174 11 6 -0.0316 -3.8507 1.5887 12 6 0.9776 -4.6654 0.8172 13 6 1.1694 -6.0225 0.6764 14 6 2.2007 -6.4976 -0.1144 15 6 3.0413 -5.6102 -0.7649 16 17 4.3338 -6.2118 -1.7553 17 6 2.8553 -4.2490 -0.6293 18 6 1.8131 -3.7637 0.1617 19 1 -0.4850 -0.8352 -0.0897 20 1 -0.2070 -1.5430 1.7116 21 1 0.0506 -4.0628 2.6547 22 1 -1.0403 -4.0699 1.2389 23 1 0.5152 -6.7157 1.1842 24 1 2.3505 -7.5615 -0.2238 25 1 3.5130 -3.5602 -1.1387 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260893091.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:48 Heat of formation + Delta-G solvation = 3.580299 kcal Electronic energy + Delta-G solvation = -12026.484232 eV Core-core repulsion = 9801.473601 eV Total energy + Delta-G solvation = -2225.010631 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 220.035 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.00750 -37.94398 -36.79348 -34.78451 -32.33208 -29.54419 -28.92665 -25.88635 -23.41065 -21.95727 -20.99472 -19.19058 -16.96452 -16.52845 -16.14300 -15.67814 -15.33765 -14.88896 -14.62602 -14.18087 -13.94751 -12.97678 -12.83343 -12.74857 -12.37118 -12.18444 -12.11242 -11.96796 -11.66927 -11.36944 -11.05108 -10.46287 -9.56920 -9.13723 -8.95922 -6.43837 0.06875 0.25632 1.10362 1.42398 1.50452 1.78567 1.95847 2.37152 2.71844 3.34587 3.66804 3.90658 3.98963 4.38924 4.43684 4.61600 4.80135 4.92708 4.97756 5.06988 5.22807 5.24040 5.55922 5.66586 5.84836 5.97153 6.06542 6.46857 6.84109 7.06363 8.18210 Molecular weight = 220.03amu Principal moments of inertia in cm(-1) A = 0.032945 B = 0.008851 C = 0.007135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.705068 B = 3162.858473 C = 3923.198157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.000 4.000 3 Si 1.115 2.885 4 H -0.272 1.272 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.553 4.553 8 H 0.061 0.939 9 C 0.041 3.959 10 C -0.402 4.402 11 C -0.019 4.019 12 C -0.110 4.110 13 C -0.089 4.089 14 C -0.114 4.114 15 C -0.042 4.042 16 Cl -0.067 7.067 17 C -0.113 4.113 18 C -0.069 4.069 19 H 0.286 0.714 20 H 0.099 0.901 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.165 0.835 24 H 0.167 0.833 25 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.937 -9.825 -0.363 10.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.215 4.215 3 Si 0.933 3.067 4 H -0.196 1.196 5 H -0.191 1.191 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.038 3.962 10 C -0.424 4.424 11 C -0.055 4.055 12 C -0.110 4.110 13 C -0.107 4.107 14 C -0.132 4.132 15 C -0.068 4.068 16 Cl -0.039 7.039 17 C -0.132 4.132 18 C -0.070 4.070 19 H 0.099 0.901 20 H 0.117 0.883 21 H 0.100 0.900 22 H 0.095 0.905 23 H 0.182 0.818 24 H 0.185 0.815 25 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.807 -8.274 -0.406 9.117 hybrid contribution 0.206 -1.344 -0.278 1.388 sum 4.012 -9.618 -0.684 10.444 Atomic orbital electron populations 1.70494 1.08896 1.33623 1.32847 1.28272 0.95856 1.06944 0.90392 0.83034 0.74708 0.70143 0.78825 1.19630 1.19097 1.18458 1.20335 1.01458 0.95202 1.41239 0.92039 1.18308 0.94426 0.89927 0.93494 1.23074 1.09782 0.95354 1.14146 1.19354 0.96256 0.91462 0.98385 1.21059 0.97702 0.94162 0.98110 1.20661 0.98225 0.92925 0.98841 1.21260 0.94337 1.00470 0.97136 1.20721 0.94026 0.92777 0.99278 1.98324 1.48927 1.87775 1.68829 1.20728 0.98294 0.94090 1.00127 1.20349 0.94993 0.95378 0.96244 0.90079 0.88277 0.89961 0.90464 0.81779 0.81547 0.86682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.58 12.52 21.84 0.27 -47.31 15 2 C 0.00 -0.02 5.23 85.28 0.45 0.42 15 3 Si 1.12 45.79 29.99 68.60 2.06 47.85 15 4 H -0.27 -10.89 7.11 99.48 0.71 -10.18 15 5 H -0.27 -10.37 7.11 99.48 0.71 -9.67 15 6 H -0.26 -9.82 7.11 99.48 0.71 -9.11 15 7 C -0.55 -31.35 9.23 23.36 0.22 -31.14 15 8 H 0.06 3.41 7.95 -2.91 -0.02 3.38 15 9 C 0.04 2.23 5.57 -20.52 -0.11 2.12 15 10 C -0.40 -21.15 9.04 25.25 0.23 -20.92 15 11 C -0.02 -0.78 6.73 29.28 0.20 -0.58 15 12 C -0.11 -4.46 6.33 -19.65 -0.12 -4.59 15 13 C -0.09 -2.73 10.03 22.19 0.22 -2.51 15 14 C -0.11 -3.29 9.83 22.35 0.22 -3.07 15 15 C -0.04 -1.41 6.31 22.28 0.14 -1.27 15 16 Cl -0.07 -1.93 28.94 -2.72 -0.08 -2.01 15 17 C -0.11 -4.77 9.82 22.54 0.22 -4.55 15 18 C -0.07 -3.29 6.15 -20.05 -0.12 -3.41 15 19 H 0.29 16.87 6.32 -92.71 -0.59 16.29 15 20 H 0.10 5.59 6.77 -2.91 -0.02 5.57 15 21 H 0.08 3.09 8.14 -2.39 -0.02 3.07 15 22 H 0.08 2.97 8.14 -2.39 -0.02 2.95 15 23 H 0.16 3.67 8.06 -2.91 -0.02 3.65 15 24 H 0.17 3.49 8.06 -2.91 -0.02 3.46 15 25 H 0.12 4.92 8.06 -2.91 -0.02 4.90 15 Total: -1.00 -61.81 238.53 5.16 -56.65 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 1.38 Total: 14.32 kcal Atomic # 6 Polarization: -71.03 SS G_CDS: 1.53 Total: -69.51 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 0.27 Total: -47.31 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.06 Total: 47.85 kcal Atomic # 17 Polarization: -1.93 SS G_CDS: -0.08 Total: -2.01 kcal Total: -61.81 5.16 -56.65 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260893091.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.231 kcal (2) G-P(sol) polarization free energy of solvation -61.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds