Wall clock time and date at job start Mon Mar 30 2020 02:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47013 * 2 1 4 4 N 1.46500 * 109.47150 * 120.00035 * 2 1 3 5 5 C 1.36337 * 125.63782 * 300.02501 * 4 2 1 6 6 C 1.34879 * 108.22240 * 179.97438 * 5 4 2 7 7 C 1.40867 * 107.41543 * 359.97438 * 6 5 4 8 8 C 1.34885 * 107.41382 * 359.97438 * 7 6 5 9 9 C 1.51189 * 109.39526 * 179.97438 * 7 6 5 10 10 H 1.08997 * 110.28269 * 136.28069 * 9 7 6 11 11 C 1.50705 * 110.28405 * 258.28937 * 9 7 6 12 12 H 1.08003 * 119.99765 * 359.97438 * 11 9 7 13 13 C 1.37870 * 119.99859 * 180.02562 * 11 9 7 14 14 N 1.31519 * 120.00057 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 120.00188 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47071 * 89.99608 * 15 13 11 17 17 H 1.48499 * 109.46936 * 210.00142 * 15 13 11 18 18 H 1.48505 * 109.46565 * 329.99942 * 15 13 11 19 19 C 1.54600 * 105.27935 * 17.27707 * 9 7 6 20 20 C 1.51186 * 143.19047 * 179.97438 * 6 5 4 21 21 H 1.09006 * 109.47012 * 299.99548 * 1 2 3 22 22 H 1.08998 * 109.47399 * 60.00198 * 1 2 3 23 23 H 1.09003 * 109.46635 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47467 * 240.00060 * 2 1 3 25 25 H 1.08996 * 109.47370 * 300.00000 * 3 2 1 26 26 H 1.09006 * 109.46863 * 60.00360 * 3 2 1 27 27 H 1.08996 * 109.47169 * 179.97438 * 3 2 1 28 28 H 1.08004 * 125.88534 * 359.96136 * 5 4 2 29 29 H 1.07999 * 125.88586 * 179.97438 * 8 7 6 30 30 H 0.97003 * 119.99975 * 180.02562 * 14 13 11 31 31 H 1.09001 * 110.81557 * 215.04561 * 19 9 7 32 32 H 1.08995 * 110.78692 * 91.63339 * 19 9 7 33 33 H 1.09002 * 110.28484 * 281.71430 * 20 6 5 34 34 H 1.09004 * 110.28354 * 43.72109 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7604 -0.3267 2.4845 6 6 2.3794 -1.2027 3.3022 7 6 3.0431 -2.1420 2.4889 8 6 2.8041 -1.8047 1.2050 9 6 3.7553 -3.1489 3.3634 10 1 3.6029 -4.1576 2.9795 11 6 5.2274 -2.8334 3.4311 12 1 5.6229 -1.9840 2.8938 13 6 6.0694 -3.6295 4.1782 14 7 5.5881 -4.6646 4.8313 15 14 7.8940 -3.2380 4.2627 16 1 8.1516 -2.3233 5.4038 17 1 8.6616 -4.4949 4.4526 18 1 8.3190 -2.5845 2.9987 19 6 3.1104 -3.0031 4.7609 20 6 2.6179 -1.5404 4.7564 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.6767 1.9564 -0.8899 26 1 1.6766 1.9563 0.8901 27 1 3.1299 1.4426 0.0005 28 1 1.1635 0.5177 2.7964 29 1 3.1730 -2.3262 0.3342 30 1 6.1804 -5.2245 5.3572 31 1 3.8494 -3.1593 5.5468 32 1 2.2733 -3.6919 4.8743 33 1 3.3799 -0.8840 5.1768 34 1 1.6902 -1.4522 5.3220 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260898907.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:25 Heat of formation + Delta-G solvation = 44.566933 kcal Electronic energy + Delta-G solvation = -14793.811792 eV Core-core repulsion = 12499.254161 eV Total energy + Delta-G solvation = -2294.557631 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.69742 -36.42437 -33.83614 -31.86907 -28.81790 -27.57422 -27.33023 -26.14544 -23.39006 -22.04884 -19.59622 -18.66913 -17.93254 -16.39077 -15.65654 -14.58611 -14.41136 -14.24002 -13.64102 -13.41000 -12.82129 -12.50976 -12.21993 -12.09503 -11.94705 -11.52661 -11.22499 -11.09452 -10.89793 -10.63445 -10.50635 -10.13733 -9.97482 -9.62717 -9.28065 -8.92987 -8.20827 -7.23752 -7.08143 -5.86037 -3.89767 3.05247 3.38357 3.44405 3.47783 3.49769 4.04622 4.57770 4.65976 4.98438 5.06798 5.41877 5.42832 5.43363 5.61738 5.64651 5.79352 5.86817 5.97360 6.10609 6.13596 6.43450 6.47314 6.70997 6.87833 7.08274 7.34933 7.49507 7.55575 7.81233 7.91809 8.10027 8.13653 8.23537 8.32331 8.64494 9.13096 9.72861 11.20686 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.040818 B = 0.007694 C = 0.007072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.801209 B = 3638.488305 C = 3958.508656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.136 3.864 3 C -0.161 4.161 4 N -0.453 5.453 5 C -0.017 4.017 6 C -0.190 4.190 7 C -0.135 4.135 8 C -0.031 4.031 9 C 0.113 3.887 10 H 0.027 0.973 11 C -0.492 4.492 12 H 0.053 0.947 13 C 0.058 3.942 14 N -0.893 5.893 15 Si 0.888 3.112 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.276 1.276 19 C -0.097 4.097 20 C -0.034 4.034 21 H 0.061 0.939 22 H 0.067 0.933 23 H 0.062 0.938 24 H 0.091 0.909 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.143 0.857 29 H 0.148 0.852 30 H 0.258 0.742 31 H 0.082 0.918 32 H 0.031 0.969 33 H 0.060 0.940 34 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.645 9.034 -7.406 14.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.033 3.967 3 C -0.219 4.219 4 N -0.132 5.132 5 C -0.145 4.145 6 C -0.198 4.198 7 C -0.142 4.142 8 C -0.157 4.157 9 C 0.094 3.906 10 H 0.045 0.955 11 C -0.531 4.531 12 H 0.071 0.929 13 C -0.142 4.142 14 N -0.532 5.532 15 Si 0.716 3.284 16 H -0.208 1.208 17 H -0.214 1.214 18 H -0.201 1.201 19 C -0.135 4.135 20 C -0.072 4.072 21 H 0.081 0.919 22 H 0.086 0.914 23 H 0.081 0.919 24 H 0.109 0.891 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.161 0.839 29 H 0.166 0.834 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -8.701 9.053 -7.609 14.682 hybrid contribution 1.053 0.270 0.009 1.087 sum -7.648 9.323 -7.600 14.254 Atomic orbital electron populations 1.22167 0.94397 1.02853 1.02433 1.21166 0.94608 0.93558 0.87375 1.22166 1.02221 0.95120 1.02398 1.43906 1.41474 1.23250 1.04599 1.20385 1.08609 1.02780 0.82677 1.20525 1.03579 0.98681 0.96980 1.21067 1.00480 1.00742 0.91896 1.20694 1.03994 0.93084 0.97915 1.17766 0.92784 0.91771 0.88271 0.95510 1.21088 0.91664 1.11686 1.28659 0.92856 1.24960 0.98241 0.95138 0.95864 1.69977 1.34876 1.16556 1.31829 0.86654 0.85832 0.77558 0.78315 1.20807 1.21359 1.20090 1.22259 0.98008 0.91841 1.01395 1.20388 0.98170 0.98638 0.90029 0.91943 0.91438 0.91902 0.89082 0.91438 0.91949 0.91809 0.83911 0.83431 0.93180 0.89948 0.94998 0.92192 0.94160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.24 37.16 0.34 -1.33 16 2 C 0.14 1.68 3.55 -67.93 -0.24 1.44 16 3 C -0.16 -1.74 9.24 37.16 0.34 -1.40 16 4 N -0.45 -7.82 2.62 -110.01 -0.29 -8.11 16 5 C -0.02 -0.31 10.36 -16.74 -0.17 -0.49 16 6 C -0.19 -4.18 6.91 -104.58 -0.72 -4.91 16 7 C -0.14 -3.23 6.17 -104.58 -0.65 -3.88 16 8 C -0.03 -0.64 11.39 -16.74 -0.19 -0.83 16 9 C 0.11 3.04 2.75 -91.84 -0.25 2.79 16 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.49 -14.18 8.53 -34.44 -0.29 -14.47 16 12 H 0.05 1.56 7.76 -52.48 -0.41 1.16 16 13 C 0.06 1.66 5.11 -17.82 -0.09 1.57 16 14 N -0.89 -26.23 12.05 55.43 0.67 -25.56 16 15 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 C -0.10 -2.42 6.20 -25.19 -0.16 -2.58 16 20 C -0.03 -0.76 6.74 -26.94 -0.18 -0.94 16 21 H 0.06 0.66 7.92 -51.93 -0.41 0.25 16 22 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.09 1.03 8.06 -51.93 -0.42 0.62 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.68 7.92 -51.93 -0.41 0.27 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.14 2.21 8.06 -52.48 -0.42 1.79 16 29 H 0.15 2.74 8.06 -52.49 -0.42 2.32 16 30 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.08 2.23 6.66 -51.93 -0.35 1.88 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 279.59 15.07 4.21 4.21 Total: -1.00 -30.99 279.59 -8.05 -39.03 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -5.36 Total: -1.49 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: -2.26 Total: -25.01 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.38 Total: -33.67 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.99 -8.05 -39.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260898907.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.601 kcal (2) G-P(sol) polarization free energy of solvation -30.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds