Wall clock time and date at job start Mon Mar 30 2020 02:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47013 * 2 1 4 4 N 1.46500 * 109.47150 * 120.00035 * 2 1 3 5 5 C 1.36337 * 125.63782 * 300.02501 * 4 2 1 6 6 C 1.34879 * 108.22240 * 179.97438 * 5 4 2 7 7 C 1.40867 * 107.41543 * 359.97438 * 6 5 4 8 8 C 1.34885 * 107.41382 * 359.97438 * 7 6 5 9 9 C 1.51189 * 109.39526 * 179.97438 * 7 6 5 10 10 H 1.08997 * 110.28269 * 136.28069 * 9 7 6 11 11 C 1.50705 * 110.28405 * 258.28937 * 9 7 6 12 12 H 1.08003 * 119.99765 * 359.97438 * 11 9 7 13 13 C 1.37870 * 119.99859 * 180.02562 * 11 9 7 14 14 N 1.31519 * 120.00057 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 120.00188 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47071 * 89.99608 * 15 13 11 17 17 H 1.48499 * 109.46936 * 210.00142 * 15 13 11 18 18 H 1.48505 * 109.46565 * 329.99942 * 15 13 11 19 19 C 1.54600 * 105.27935 * 17.27707 * 9 7 6 20 20 C 1.51186 * 143.19047 * 179.97438 * 6 5 4 21 21 H 1.09006 * 109.47012 * 299.99548 * 1 2 3 22 22 H 1.08998 * 109.47399 * 60.00198 * 1 2 3 23 23 H 1.09003 * 109.46635 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47467 * 240.00060 * 2 1 3 25 25 H 1.08996 * 109.47370 * 300.00000 * 3 2 1 26 26 H 1.09006 * 109.46863 * 60.00360 * 3 2 1 27 27 H 1.08996 * 109.47169 * 179.97438 * 3 2 1 28 28 H 1.08004 * 125.88534 * 359.96136 * 5 4 2 29 29 H 1.07999 * 125.88586 * 179.97438 * 8 7 6 30 30 H 0.97003 * 119.99975 * 180.02562 * 14 13 11 31 31 H 1.09001 * 110.81557 * 215.04561 * 19 9 7 32 32 H 1.08995 * 110.78692 * 91.63339 * 19 9 7 33 33 H 1.09002 * 110.28484 * 281.71430 * 20 6 5 34 34 H 1.09004 * 110.28354 * 43.72109 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7604 -0.3267 2.4845 6 6 2.3794 -1.2027 3.3022 7 6 3.0431 -2.1420 2.4889 8 6 2.8041 -1.8047 1.2050 9 6 3.7553 -3.1489 3.3634 10 1 3.6029 -4.1576 2.9795 11 6 5.2274 -2.8334 3.4311 12 1 5.6229 -1.9840 2.8938 13 6 6.0694 -3.6295 4.1782 14 7 5.5881 -4.6646 4.8313 15 14 7.8940 -3.2380 4.2627 16 1 8.1516 -2.3233 5.4038 17 1 8.6616 -4.4949 4.4526 18 1 8.3190 -2.5845 2.9987 19 6 3.1104 -3.0031 4.7609 20 6 2.6179 -1.5404 4.7564 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.6767 1.9564 -0.8899 26 1 1.6766 1.9563 0.8901 27 1 3.1299 1.4426 0.0005 28 1 1.1635 0.5177 2.7964 29 1 3.1730 -2.3262 0.3342 30 1 6.1804 -5.2245 5.3572 31 1 3.8494 -3.1593 5.5468 32 1 2.2733 -3.6919 4.8743 33 1 3.3799 -0.8840 5.1768 34 1 1.6902 -1.4522 5.3220 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260898907.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:25 Heat of formation + Delta-G solvation = 28.063722 kcal Electronic energy + Delta-G solvation = -14794.527425 eV Core-core repulsion = 12499.254161 eV Total energy + Delta-G solvation = -2295.273264 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.22463 -37.97787 -35.34176 -33.82488 -30.60236 -29.08897 -28.13339 -28.02872 -25.40241 -23.48066 -21.09679 -20.32250 -19.53372 -18.28181 -17.29093 -16.52420 -15.88691 -15.33161 -15.19499 -15.03354 -14.24738 -14.02540 -13.58242 -13.37217 -13.20718 -12.99365 -12.87620 -12.58161 -12.50745 -12.12964 -12.09019 -11.90335 -11.77168 -11.62534 -11.20746 -11.02489 -10.39316 -8.83574 -8.73341 -8.03566 -6.17885 1.40321 1.41464 1.51365 1.55725 2.19287 2.28721 2.51573 3.20699 3.69587 4.08050 4.08225 4.16798 4.25799 4.52102 4.59953 4.61948 4.71132 4.79873 4.86634 4.90627 4.97010 5.13727 5.20525 5.28198 5.29321 5.42211 5.50646 5.73836 5.82362 5.99247 6.01788 6.34069 6.49648 6.58316 6.85369 6.90594 7.48725 9.00530 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.040818 B = 0.007694 C = 0.007072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.801209 B = 3638.488305 C = 3958.508656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.124 3.876 3 C -0.156 4.156 4 N -0.439 5.439 5 C 0.008 3.992 6 C -0.224 4.224 7 C -0.185 4.185 8 C -0.030 4.030 9 C 0.109 3.891 10 H -0.016 1.016 11 C -0.510 4.510 12 H 0.041 0.959 13 C 0.011 3.989 14 N -0.921 5.921 15 Si 0.955 3.045 16 H -0.274 1.274 17 H -0.280 1.280 18 H -0.272 1.272 19 C -0.093 4.093 20 C -0.024 4.024 21 H 0.063 0.937 22 H 0.099 0.901 23 H 0.050 0.950 24 H 0.103 0.897 25 H 0.100 0.900 26 H 0.063 0.937 27 H 0.045 0.955 28 H 0.183 0.817 29 H 0.161 0.839 30 H 0.261 0.739 31 H 0.053 0.947 32 H 0.031 0.969 33 H 0.051 0.949 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.528 11.435 -8.753 17.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.024 3.976 3 C -0.214 4.214 4 N -0.116 5.116 5 C -0.122 4.122 6 C -0.231 4.231 7 C -0.191 4.191 8 C -0.158 4.158 9 C 0.090 3.910 10 H 0.002 0.998 11 C -0.549 4.549 12 H 0.059 0.941 13 C -0.187 4.187 14 N -0.560 5.560 15 Si 0.780 3.220 16 H -0.199 1.199 17 H -0.205 1.205 18 H -0.197 1.197 19 C -0.131 4.131 20 C -0.062 4.062 21 H 0.082 0.918 22 H 0.118 0.882 23 H 0.069 0.931 24 H 0.121 0.879 25 H 0.119 0.881 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.200 0.800 29 H 0.178 0.822 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.602 11.475 -8.983 17.452 hybrid contribution 1.267 -0.474 0.323 1.391 sum -8.336 11.000 -8.660 16.294 Atomic orbital electron populations 1.22140 0.92286 1.02623 1.04171 1.21663 0.96223 0.94210 0.85537 1.22150 1.01100 0.93951 1.04180 1.44261 1.39518 1.21869 1.05992 1.20840 1.06697 1.02206 0.82409 1.20620 1.05739 1.00131 0.96613 1.20926 1.02811 1.01597 0.93806 1.20866 1.03859 0.93944 0.97168 1.17640 0.92782 0.90547 0.90074 0.99793 1.21285 0.93156 1.11521 1.28916 0.94084 1.25740 1.02767 0.94871 0.95305 1.70100 1.36469 1.17280 1.32193 0.85614 0.80260 0.77657 0.78478 1.19946 1.20516 1.19690 1.22085 0.97119 0.94485 0.99445 1.20194 0.98994 0.95840 0.91195 0.91751 0.88193 0.93124 0.87933 0.88096 0.91783 0.93544 0.80042 0.82183 0.92977 0.92795 0.95012 0.93011 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.24 71.98 0.66 -1.89 16 2 C 0.12 2.62 3.55 44.99 0.16 2.78 16 3 C -0.16 -2.74 9.24 71.98 0.66 -2.07 16 4 N -0.44 -14.13 2.62 -501.96 -1.31 -15.44 16 5 C 0.01 0.28 10.36 83.22 0.86 1.14 16 6 C -0.22 -9.75 6.91 -19.84 -0.14 -9.89 16 7 C -0.18 -9.02 6.17 -19.84 -0.12 -9.15 16 8 C -0.03 -1.23 11.39 83.22 0.95 -0.28 16 9 C 0.11 6.16 2.75 -11.58 -0.03 6.13 16 10 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 11 C -0.51 -30.61 8.53 25.60 0.22 -30.40 16 12 H 0.04 2.49 7.76 -2.91 -0.02 2.47 16 13 C 0.01 0.65 5.11 84.65 0.43 1.09 16 14 N -0.92 -56.03 12.05 21.45 0.26 -55.77 16 15 Si 0.95 45.87 29.54 68.60 2.03 47.90 16 16 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 17 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 18 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 19 C -0.09 -4.88 6.20 31.59 0.20 -4.68 16 20 C -0.02 -1.08 6.74 30.46 0.21 -0.88 16 21 H 0.06 1.06 7.92 -2.38 -0.02 1.04 16 22 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.10 1.97 8.06 -2.39 -0.02 1.95 16 25 H 0.10 1.13 8.14 -2.39 -0.02 1.12 16 26 H 0.06 1.12 7.92 -2.38 -0.02 1.10 16 27 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.18 4.79 8.06 -2.91 -0.02 4.76 16 29 H 0.16 5.91 8.06 -2.91 -0.02 5.88 16 30 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 31 H 0.05 3.07 6.66 -2.39 -0.02 3.05 16 32 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 Total: -1.00 -70.00 279.59 6.08 -63.92 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 1.05 Total: 7.49 kcal Atomic # 6 Polarization: -52.15 SS G_CDS: 4.06 Total: -48.09 kcal Atomic # 7 Polarization: -70.16 SS G_CDS: -1.05 Total: -71.22 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -70.00 6.08 -63.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260898907.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.979 kcal (2) G-P(sol) polarization free energy of solvation -69.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds