Wall clock time and date at job start Mon Mar 30 2020 02:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30796 * 1 3 3 Si 1.86799 * 120.00407 * 2 1 4 4 H 1.48500 * 109.47030 * 85.52442 * 3 2 1 5 5 H 1.48489 * 109.47330 * 205.52517 * 3 2 1 6 6 H 1.48503 * 109.47053 * 325.52585 * 3 2 1 7 7 C 1.40018 * 119.99703 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99943 * 192.37681 * 7 2 1 9 9 C 1.40937 * 119.99916 * 12.36890 * 7 2 1 10 10 C 1.35883 * 124.86050 * 19.26958 * 9 7 2 11 11 C 1.51057 * 107.76606 * 179.91201 * 10 9 7 12 12 C 1.50918 * 105.85610 * 0.34027 * 11 10 9 13 13 C 1.37740 * 132.61802 * 179.77794 * 12 11 10 14 14 C 1.38508 * 119.98476 * 180.02562 * 13 12 11 15 15 Cl 1.73603 * 119.97202 * 180.02562 * 14 13 12 16 16 C 1.38460 * 120.05542 * 0.02562 * 14 13 12 17 17 C 1.37904 * 120.27602 * 359.94257 * 16 14 13 18 18 C 1.39319 * 106.98883 * 359.80105 * 12 11 10 19 19 H 0.97004 * 119.99752 * 359.97438 * 1 2 3 20 20 H 1.07995 * 126.11818 * 0.02562 * 10 9 7 21 21 H 1.09004 * 110.33836 * 241.15581 * 11 10 9 22 22 H 1.08991 * 110.00304 * 119.34870 * 11 10 9 23 23 H 1.07993 * 120.00398 * 0.02562 * 13 12 11 24 24 H 1.08005 * 119.86735 * 179.97438 * 16 14 13 25 25 H 1.08006 * 120.01472 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.3950 2.1009 1.3958 5 1 3.5836 1.4146 -0.6032 6 1 1.4901 2.6235 -0.7925 7 6 2.0080 -1.2126 -0.0005 8 1 3.0691 -1.2236 0.1999 9 6 1.3278 -2.4188 -0.2625 10 6 0.1203 -2.5115 -0.8788 11 6 -0.2440 -3.9752 -0.9612 12 6 0.8951 -4.7209 -0.3101 13 6 1.1258 -6.0602 -0.0859 14 6 2.2871 -6.4655 0.5509 15 17 2.5779 -8.1536 0.8327 16 6 3.2163 -5.5253 0.9630 17 6 2.9922 -4.1828 0.7414 18 6 1.8241 -3.7673 0.1003 19 1 -0.4850 0.8401 0.0004 20 1 -0.4721 -1.6865 -1.2458 21 1 -0.3477 -4.2818 -2.0021 22 1 -1.1720 -4.1595 -0.4201 23 1 0.4014 -6.7941 -0.4067 24 1 4.1206 -5.8447 1.4597 25 1 3.7201 -3.4530 1.0642 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260980744.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:49 Heat of formation + Delta-G solvation = 9.954375 kcal Electronic energy + Delta-G solvation = -11958.003447 eV Core-core repulsion = 9733.269216 eV Total energy + Delta-G solvation = -2224.734230 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 220.035 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.86750 -37.80112 -36.47257 -34.75540 -32.30690 -29.59272 -29.03013 -25.83818 -23.20927 -21.85194 -20.87582 -18.47379 -17.05586 -16.76567 -16.25454 -15.72449 -15.19506 -14.73378 -14.38208 -13.82900 -13.61477 -13.31182 -13.02493 -12.56062 -12.37316 -12.23146 -12.18461 -11.88265 -11.49390 -11.44800 -11.18591 -10.20035 -9.69700 -8.68729 -8.48438 -6.26960 0.11018 0.43785 1.16893 1.33183 1.40257 1.53375 2.01620 2.27038 2.80443 3.55165 3.73642 4.02402 4.17179 4.49132 4.51255 4.58083 4.94297 5.00338 5.03913 5.18158 5.27320 5.40907 5.42818 5.81195 5.93496 6.07363 6.32778 6.88708 7.08345 7.15841 8.51390 Molecular weight = 220.03amu Principal moments of inertia in cm(-1) A = 0.056552 B = 0.007175 C = 0.006448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.997644 B = 3901.336373 C = 4341.360380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.024 3.976 3 Si 0.979 3.021 4 H -0.266 1.266 5 H -0.260 1.260 6 H -0.270 1.270 7 C -0.485 4.485 8 H 0.068 0.932 9 C 0.030 3.970 10 C -0.333 4.333 11 C -0.029 4.029 12 C -0.110 4.110 13 C -0.096 4.096 14 C -0.052 4.052 15 Cl -0.064 7.064 16 C -0.110 4.110 17 C -0.110 4.110 18 C -0.067 4.067 19 H 0.280 0.720 20 H 0.118 0.882 21 H 0.083 0.917 22 H 0.075 0.925 23 H 0.148 0.852 24 H 0.155 0.845 25 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.650 -8.597 0.819 9.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.187 4.187 3 Si 0.801 3.199 4 H -0.191 1.191 5 H -0.184 1.184 6 H -0.195 1.195 7 C -0.516 4.516 8 H 0.086 0.914 9 C 0.028 3.972 10 C -0.355 4.355 11 C -0.065 4.065 12 C -0.110 4.110 13 C -0.114 4.114 14 C -0.078 4.078 15 Cl -0.035 7.035 16 C -0.128 4.128 17 C -0.128 4.128 18 C -0.068 4.068 19 H 0.090 0.910 20 H 0.135 0.865 21 H 0.101 0.899 22 H 0.093 0.907 23 H 0.165 0.835 24 H 0.173 0.827 25 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.494 -8.621 0.863 9.342 hybrid contribution 0.136 0.860 0.078 0.875 sum 3.630 -7.761 0.941 8.619 Atomic orbital electron populations 1.69865 1.08738 1.29441 1.38438 1.26599 0.95567 1.03985 0.92556 0.85231 0.79040 0.76602 0.79021 1.19095 1.18414 1.19515 1.19342 0.95885 0.91673 1.44698 0.91410 1.18221 0.94776 0.89596 0.94571 1.23526 1.02572 0.94119 1.15275 1.19546 0.94933 0.93037 0.98969 1.20767 0.97950 0.92839 0.99493 1.20309 0.97010 0.94229 0.99894 1.20729 0.97172 0.85211 1.04694 1.98322 1.95991 1.14015 1.95154 1.21003 0.99818 0.91031 1.00990 1.20960 0.96757 0.95696 0.99371 1.20673 0.94534 0.95422 0.96131 0.90959 0.86458 0.89903 0.90716 0.83469 0.82723 0.85348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.68 10.89 21.84 0.24 -45.44 15 2 C 0.02 1.28 5.38 85.28 0.46 1.74 15 3 Si 0.98 39.90 29.58 68.60 2.03 41.93 15 4 H -0.27 -10.43 7.11 99.48 0.71 -9.72 15 5 H -0.26 -10.34 7.11 99.48 0.71 -9.63 15 6 H -0.27 -10.57 7.11 99.48 0.71 -9.87 15 7 C -0.49 -26.80 9.30 23.36 0.22 -26.58 15 8 H 0.07 3.58 7.88 -2.91 -0.02 3.56 15 9 C 0.03 1.63 5.80 -20.52 -0.12 1.51 15 10 C -0.33 -17.66 9.87 25.25 0.25 -17.41 15 11 C -0.03 -1.24 6.73 29.28 0.20 -1.05 15 12 C -0.11 -4.62 6.33 -19.65 -0.12 -4.74 15 13 C -0.10 -3.30 9.82 22.22 0.22 -3.09 15 14 C -0.05 -1.65 6.33 22.39 0.14 -1.51 15 15 Cl -0.06 -1.65 28.96 -2.72 -0.08 -1.73 15 16 C -0.11 -3.60 9.81 22.24 0.22 -3.38 15 17 C -0.11 -4.36 10.04 22.51 0.23 -4.13 15 18 C -0.07 -3.16 6.15 -20.05 -0.12 -3.29 15 19 H 0.28 13.94 8.30 -92.71 -0.77 13.17 15 20 H 0.12 6.69 6.41 -2.91 -0.02 6.67 15 21 H 0.08 3.20 8.14 -2.38 -0.02 3.18 15 22 H 0.07 3.03 8.14 -2.39 -0.02 3.01 15 23 H 0.15 4.21 8.06 -2.91 -0.02 4.19 15 24 H 0.16 4.01 8.06 -2.91 -0.02 3.98 15 25 H 0.13 4.86 8.06 -2.91 -0.02 4.84 15 Total: -1.00 -58.74 239.33 4.95 -53.79 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 1.20 Total: 13.37 kcal Atomic # 6 Polarization: -63.48 SS G_CDS: 1.56 Total: -61.92 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.24 Total: -45.44 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.93 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -0.08 Total: -1.73 kcal Total: -58.74 4.95 -53.79 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260980744.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.746 kcal (2) G-P(sol) polarization free energy of solvation -58.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds