Wall clock time and date at job start Mon Mar 30 2020 02:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31583 * 1 3 3 Si 1.86803 * 120.00080 * 2 1 4 4 H 1.48496 * 109.47202 * 270.00058 * 3 2 1 5 5 H 1.48500 * 109.46843 * 29.99793 * 3 2 1 6 6 H 1.48497 * 109.47174 * 149.99889 * 3 2 1 7 7 C 1.38643 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00000 * 180.02562 * 7 2 1 9 9 O 1.34927 * 119.99571 * 359.97438 * 7 2 1 10 10 C 1.42905 * 116.99666 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46771 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46646 * 180.02562 * 11 10 9 13 13 C 1.53042 * 113.15128 * 275.37295 * 12 11 10 14 14 S 1.81424 * 89.88693 * 211.85455 * 13 12 11 15 15 O 1.42098 * 112.75539 * 280.47588 * 14 13 12 16 16 O 1.42103 * 112.75155 * 136.72920 * 14 13 12 17 17 C 1.53049 * 113.14851 * 175.00005 * 12 11 10 18 18 H 0.96992 * 119.99917 * 359.97438 * 1 2 3 19 19 H 1.09004 * 109.46427 * 60.00507 * 10 9 7 20 20 H 1.08990 * 109.47049 * 300.00550 * 10 9 7 21 21 H 1.08995 * 109.47505 * 60.00640 * 11 10 9 22 22 H 1.09000 * 109.47175 * 300.00157 * 11 10 9 23 23 H 1.09006 * 112.49659 * 45.21976 * 12 11 10 24 24 H 1.08994 * 113.14999 * 327.11339 * 13 12 11 25 25 H 1.09003 * 113.14438 * 96.60038 * 13 12 11 26 26 H 1.09000 * 113.14378 * 263.40819 * 17 12 11 27 27 H 1.08994 * 113.14576 * 32.89219 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6178 0.0000 4 1 2.4974 2.0464 -1.4000 5 1 1.4473 2.6527 0.7000 6 1 3.5474 1.4402 0.7000 7 6 2.0091 -1.2007 0.0005 8 1 3.0891 -1.2006 0.0010 9 8 1.3344 -2.3691 0.0016 10 6 2.1127 -3.5676 0.0015 11 6 1.1807 -4.7809 0.0021 12 6 2.0141 -6.0641 0.0027 13 6 2.4522 -6.4976 -1.3981 14 16 2.3759 -8.2348 -0.8805 15 8 3.5180 -8.6375 -0.1371 16 8 1.7661 -9.0719 -1.8534 17 6 1.1660 -7.3322 0.1260 18 1 -0.4849 0.8400 0.0004 19 1 2.7421 -3.5920 0.8911 20 1 2.7409 -3.5928 -0.8888 21 1 0.5516 -4.7563 -0.8876 22 1 0.5522 -4.7558 0.8923 23 1 2.8362 -6.0272 0.7175 24 1 1.7250 -6.2485 -2.1708 25 1 3.4604 -6.1702 -1.6522 26 1 1.0969 -7.7036 1.1484 27 1 0.1910 -7.2438 -0.3530 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260995235.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:55 Heat of formation + Delta-G solvation = -119.706731 kcal Electronic energy + Delta-G solvation = -12853.707586 eV Core-core repulsion = 10318.085614 eV Total energy + Delta-G solvation = -2535.621971 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 220.060 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.06316 -38.29476 -37.65805 -37.01608 -33.99885 -31.20303 -27.51153 -26.75662 -24.07100 -21.54258 -19.72261 -19.62755 -17.55006 -17.29503 -17.17135 -17.00294 -16.36477 -15.83807 -15.58337 -14.80455 -14.03579 -13.97852 -13.48906 -13.43655 -13.27007 -13.24717 -12.86234 -12.70550 -12.14706 -12.12494 -11.87212 -11.40681 -11.29398 -11.22073 -11.17725 -10.15852 -8.19647 -5.89591 -0.73615 1.13020 1.39536 1.45975 1.55266 2.32196 2.80292 3.10449 3.13549 3.25535 3.75547 3.78482 4.11242 4.34785 4.38872 4.47120 4.65111 4.66562 4.87228 4.94225 5.05117 5.17602 5.25633 5.36680 6.19589 7.23538 8.04796 9.05391 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.085588 B = 0.005090 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 327.070404 B = 5499.447889 C = 5616.655328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.043 4.043 3 Si 1.006 2.994 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.381 4.381 8 H 0.073 0.927 9 O -0.341 6.341 10 C 0.060 3.940 11 C -0.084 4.084 12 C -0.074 4.074 13 C -0.596 4.596 14 S 2.449 3.551 15 O -0.948 6.948 16 O -0.961 6.961 17 C -0.581 4.581 18 H 0.261 0.739 19 H 0.029 0.971 20 H 0.031 0.969 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.122 0.878 24 H 0.151 0.849 25 H 0.135 0.865 26 H 0.145 0.855 27 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.890 -14.491 -0.921 15.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.236 4.236 3 Si 0.828 3.172 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.183 1.183 7 C -0.460 4.460 8 H 0.090 0.910 9 O -0.258 6.258 10 C -0.016 4.016 11 C -0.123 4.123 12 C -0.094 4.094 13 C -0.725 4.725 14 S 2.634 3.366 15 O -0.945 6.945 16 O -0.958 6.958 17 C -0.711 4.711 18 H 0.070 0.930 19 H 0.047 0.953 20 H 0.049 0.951 21 H 0.088 0.912 22 H 0.087 0.913 23 H 0.140 0.860 24 H 0.169 0.831 25 H 0.153 0.847 26 H 0.163 0.837 27 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 5.057 -15.556 -1.139 16.397 hybrid contribution -0.011 1.925 0.213 1.937 sum 5.046 -13.631 -0.925 14.564 Atomic orbital electron populations 1.70186 1.07585 1.27301 1.53333 1.26262 0.96800 1.02115 0.98465 0.84749 0.77628 0.76133 0.78680 1.19496 1.20323 1.18301 1.21346 0.90886 0.83652 1.50089 0.90983 1.85540 1.34475 1.12138 1.93620 1.22471 0.94312 0.86421 0.98445 1.21194 0.97377 0.90656 1.03120 1.21443 0.98441 0.93922 0.95615 1.31120 1.11618 1.24618 1.05192 1.07185 0.76523 0.76114 0.76812 1.93659 1.47868 1.82063 1.70904 1.93585 1.76704 1.66765 1.58734 1.30937 1.15674 1.07282 1.17179 0.93005 0.95333 0.95099 0.91170 0.91326 0.85957 0.83053 0.84688 0.83709 0.82617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.87 13.68 21.61 0.30 -59.58 15 2 C -0.04 -2.56 5.49 84.83 0.47 -2.10 15 3 Si 1.01 44.88 29.55 68.60 2.03 46.91 15 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 15 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 15 6 H -0.26 -10.74 7.11 99.48 0.71 -10.03 15 7 C -0.38 -22.64 9.89 67.92 0.67 -21.96 15 8 H 0.07 3.97 7.77 -2.91 -0.02 3.94 15 9 O -0.34 -19.87 9.78 -81.97 -0.80 -20.67 15 10 C 0.06 2.55 6.01 71.98 0.43 2.99 15 11 C -0.08 -2.70 5.36 30.60 0.16 -2.53 15 12 C -0.07 -1.57 3.32 -10.76 -0.04 -1.60 15 13 C -0.60 -10.32 7.49 72.00 0.54 -9.79 15 14 S 2.45 39.33 7.55 -56.49 -0.43 38.90 15 15 O -0.95 -21.21 18.18 -127.88 -2.32 -23.54 15 16 O -0.96 -21.68 18.18 -127.88 -2.32 -24.01 15 17 C -0.58 -8.63 7.50 72.00 0.54 -8.09 15 18 H 0.26 15.44 8.31 -92.71 -0.77 14.67 15 19 H 0.03 1.15 8.14 -2.39 -0.02 1.13 15 20 H 0.03 1.24 8.14 -2.39 -0.02 1.22 15 21 H 0.07 2.26 7.89 -2.39 -0.02 2.24 15 22 H 0.07 2.26 8.14 -2.39 -0.02 2.24 15 23 H 0.12 2.36 8.13 -2.38 -0.02 2.34 15 24 H 0.15 2.47 7.94 -2.39 -0.02 2.46 15 25 H 0.13 2.06 8.14 -2.39 -0.02 2.04 15 26 H 0.14 1.59 8.14 -2.39 -0.02 1.57 15 27 H 0.16 2.04 8.12 -2.39 -0.02 2.03 15 Total: -1.00 -81.69 252.16 0.38 -81.32 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: 1.15 Total: 3.74 kcal Atomic # 6 Polarization: -45.86 SS G_CDS: 2.78 Total: -43.08 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: 0.30 Total: -59.58 kcal Atomic # 8 Polarization: -62.76 SS G_CDS: -5.45 Total: -68.21 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: 39.33 SS G_CDS: -0.43 Total: 38.90 kcal Total: -81.69 0.38 -81.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260995235.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.390 kcal (2) G-P(sol) polarization free energy of solvation -81.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds