Wall clock time and date at job start Mon Mar 30 2020 02:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30848 * 1 3 3 Si 1.86798 * 119.99767 * 2 1 4 4 H 1.48503 * 109.47290 * 85.01202 * 3 2 1 5 5 H 1.48507 * 109.47146 * 205.01190 * 3 2 1 6 6 H 1.48503 * 109.47259 * 325.00956 * 3 2 1 7 7 C 1.40150 * 119.99951 * 179.72129 * 2 1 3 8 8 H 1.08004 * 119.99584 * 186.53164 * 7 2 1 9 9 C 1.39438 * 120.00367 * 6.53306 * 7 2 1 10 10 O 1.35214 * 125.60985 * 6.35803 * 9 7 2 11 11 C 1.35215 * 110.07441 * 179.97438 * 10 9 7 12 12 C 1.38735 * 132.48323 * 179.97438 * 11 10 9 13 13 C 1.38010 * 120.15725 * 180.02562 * 12 11 10 14 14 C 1.39226 * 120.65918 * 0.02562 * 13 12 11 15 15 O 1.35981 * 119.91679 * 179.97438 * 14 13 12 16 16 C 1.38050 * 120.17180 * 359.95701 * 14 13 12 17 17 C 1.40109 * 119.60389 * 0.06182 * 16 14 13 18 18 C 1.39728 * 125.61845 * 186.05231 * 9 7 2 19 19 O 1.35611 * 126.78863 * 0.03332 * 18 9 7 20 20 H 0.97002 * 120.00327 * 0.02562 * 1 2 3 21 21 H 1.08002 * 119.91484 * 359.97438 * 12 11 10 22 22 H 1.08004 * 119.67309 * 179.97438 * 13 12 11 23 23 H 0.96702 * 113.99790 * 89.99528 * 15 14 13 24 24 H 1.08002 * 120.19639 * 180.02562 * 16 14 13 25 25 H 0.96705 * 113.99922 * 90.02354 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.3845 2.1074 1.3948 5 1 3.5888 1.4121 -0.5920 6 1 1.4965 2.6200 -0.8029 7 6 2.0092 -1.2137 0.0059 8 1 3.0840 -1.2162 0.1123 9 6 1.3189 -2.4181 -0.1256 10 8 -0.0020 -2.5441 -0.3857 11 6 -0.3401 -3.8518 -0.4479 12 6 -1.5452 -4.4979 -0.6829 13 6 -1.6029 -5.8767 -0.6892 14 6 -0.4587 -6.6362 -0.4605 15 8 -0.5329 -7.9940 -0.4696 16 6 0.7512 -6.0145 -0.2248 17 6 0.8201 -4.6152 -0.2160 18 6 1.8793 -3.6934 -0.0164 19 8 3.1783 -3.9909 0.2347 20 1 -0.4851 0.8400 -0.0004 21 1 -2.4403 -3.9203 -0.8605 22 1 -2.5452 -6.3716 -0.8726 23 1 -0.3835 -8.3902 -1.3389 24 1 1.6391 -6.6033 -0.0477 25 1 3.3876 -4.0767 1.1749 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260998225.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:43 Heat of formation + Delta-G solvation = -80.660447 kcal Electronic energy + Delta-G solvation = -14245.286087 eV Core-core repulsion = 11575.913339 eV Total energy + Delta-G solvation = -2669.372749 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.057 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.83642 -38.05145 -35.87810 -35.14260 -33.87852 -30.66859 -29.08952 -28.17537 -25.38580 -21.86267 -21.29808 -20.05748 -18.31303 -17.36287 -17.05281 -15.50647 -15.18680 -15.02531 -14.62721 -14.14909 -13.47300 -13.19694 -13.02164 -12.52994 -12.02189 -11.76373 -11.58795 -11.27665 -10.89811 -10.79550 -10.62476 -10.03219 -9.78248 -8.95871 -8.77338 -7.52451 -7.28966 -7.13069 -4.75956 1.96758 2.26307 2.74908 2.84510 2.91588 3.47578 3.59372 4.28977 4.51316 4.77324 4.92962 5.58791 5.73072 5.91281 6.30447 6.39838 6.51429 6.59472 6.74164 6.98982 7.17544 7.32212 7.40244 7.48134 7.75631 8.00404 8.18024 8.30945 8.74740 9.10986 9.67798 Molecular weight = 220.06amu Principal moments of inertia in cm(-1) A = 0.053192 B = 0.008242 C = 0.007176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.271333 B = 3396.221427 C = 3900.780028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.749 5.749 2 C 0.062 3.938 3 Si 0.932 3.068 4 H -0.263 1.263 5 H -0.253 1.253 6 H -0.270 1.270 7 C -0.406 4.406 8 H 0.117 0.883 9 C 0.232 3.768 10 O -0.166 6.166 11 C -0.017 4.017 12 C -0.074 4.074 13 C -0.197 4.197 14 C 0.091 3.909 15 O -0.505 6.505 16 C -0.164 4.164 17 C -0.046 4.046 18 C -0.224 4.224 19 O -0.454 6.454 20 H 0.294 0.706 21 H 0.118 0.882 22 H 0.118 0.882 23 H 0.377 0.623 24 H 0.113 0.887 25 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.434 -1.832 -0.738 2.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.163 4.163 3 Si 0.755 3.245 4 H -0.188 1.188 5 H -0.177 1.177 6 H -0.194 1.194 7 C -0.433 4.433 8 H 0.135 0.865 9 C 0.180 3.820 10 O -0.067 6.067 11 C -0.064 4.064 12 C -0.092 4.092 13 C -0.216 4.216 14 C 0.047 3.953 15 O -0.314 6.314 16 C -0.183 4.183 17 C -0.048 4.048 18 C -0.271 4.271 19 O -0.257 6.257 20 H 0.105 0.895 21 H 0.136 0.864 22 H 0.136 0.864 23 H 0.231 0.769 24 H 0.131 0.869 25 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.923 -1.407 -0.807 1.866 hybrid contribution 0.389 0.454 0.119 0.609 sum -0.534 -0.952 -0.689 1.291 Atomic orbital electron populations 1.69781 1.07887 1.31016 1.28453 1.26400 0.95188 1.02789 0.91928 0.85865 0.80509 0.78481 0.79677 1.18753 1.17669 1.19435 1.19079 0.95961 0.87384 1.40867 0.86500 1.19707 0.79060 0.93891 0.89347 1.84702 1.24903 1.21852 1.75258 1.19486 0.94946 0.83275 1.08666 1.19496 0.94193 0.92921 1.02636 1.20542 0.97904 0.92435 1.10680 1.18036 0.92556 0.81678 1.02983 1.84810 1.94232 1.17345 1.35024 1.20434 0.96614 0.92651 1.08609 1.18748 0.94039 0.92941 0.99027 1.17690 0.85492 0.89306 1.34648 1.84889 1.22257 1.91777 1.26802 0.89512 0.86437 0.86376 0.76948 0.86943 0.81673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -18.34 12.03 55.56 0.67 -17.67 15 2 C 0.06 1.45 5.49 -17.25 -0.09 1.36 15 3 Si 0.93 16.89 29.57 -169.99 -5.03 11.86 15 4 H -0.26 -4.64 7.11 56.52 0.40 -4.23 15 5 H -0.25 -4.53 7.11 56.52 0.40 -4.13 15 6 H -0.27 -4.76 7.11 56.52 0.40 -4.36 15 7 C -0.41 -10.28 9.25 -38.42 -0.36 -10.63 15 8 H 0.12 2.78 7.86 -52.48 -0.41 2.37 15 9 C 0.23 6.30 6.74 -38.58 -0.26 6.04 15 10 O -0.17 -4.56 8.98 0.55 0.00 -4.55 15 11 C -0.02 -0.43 7.35 -38.43 -0.28 -0.72 15 12 C -0.07 -1.59 10.05 -39.48 -0.40 -1.98 15 13 C -0.20 -3.87 9.96 -39.30 -0.39 -4.26 15 14 C 0.09 1.86 6.69 -39.28 -0.26 1.59 15 15 O -0.51 -8.70 13.50 -19.68 -0.27 -8.97 15 16 C -0.16 -3.70 10.05 -38.95 -0.39 -4.09 15 17 C -0.05 -1.17 6.17 -106.85 -0.66 -1.83 15 18 C -0.22 -5.91 7.43 -37.66 -0.28 -6.19 15 19 O -0.45 -10.90 13.61 -18.53 -0.25 -11.15 15 20 H 0.29 6.34 8.30 -40.82 -0.34 6.00 15 21 H 0.12 2.24 8.06 -52.49 -0.42 1.82 15 22 H 0.12 1.96 8.06 -52.48 -0.42 1.54 15 23 H 0.38 4.49 9.06 45.56 0.41 4.91 15 24 H 0.11 2.40 8.06 -52.49 -0.42 1.97 15 25 H 0.33 6.55 9.06 45.56 0.41 6.96 15 LS Contribution 236.65 15.07 3.57 3.57 Total: -1.00 -30.11 236.65 -4.67 -34.77 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.01 Total: 12.85 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -3.37 Total: -20.71 kcal Atomic # 7 Polarization: -18.34 SS G_CDS: 0.67 Total: -17.67 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.51 Total: -24.67 kcal Atomic # 14 Polarization: 16.89 SS G_CDS: -5.03 Total: 11.86 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -30.11 -4.67 -34.77 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260998225.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.886 kcal (2) G-P(sol) polarization free energy of solvation -30.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds