Wall clock time and date at job start Mon Mar 30 2020 02:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46905 * 109.46851 * 2 1 4 4 C 1.46898 * 110.99579 * 174.78415 * 3 2 1 5 5 H 1.09002 * 109.47559 * 35.60588 * 4 3 2 6 6 C 1.50698 * 109.46937 * 155.60526 * 4 3 2 7 7 H 1.08001 * 119.99905 * 119.99687 * 6 4 3 8 8 C 1.37881 * 120.00269 * 299.99684 * 6 4 3 9 9 N 1.31512 * 120.00052 * 180.02562 * 8 6 4 10 10 Si 1.86800 * 119.99723 * 0.02562 * 8 6 4 11 11 H 1.48490 * 109.47037 * 90.00011 * 10 8 6 12 12 H 1.48498 * 109.46855 * 210.00158 * 10 8 6 13 13 H 1.48503 * 109.47114 * 329.99937 * 10 8 6 14 14 C 1.50695 * 109.46947 * 275.60164 * 4 3 2 15 15 C 1.38232 * 120.00315 * 314.52870 * 14 4 3 16 16 C 1.38239 * 120.00162 * 179.78641 * 15 14 4 17 17 C 1.38233 * 120.00028 * 0.44019 * 16 15 14 18 18 C 1.50701 * 120.00283 * 179.83349 * 17 16 15 19 19 C 1.38239 * 120.00061 * 359.81562 * 17 16 15 20 20 C 1.38237 * 119.99980 * 134.79832 * 14 4 3 21 21 H 1.08997 * 109.47089 * 300.00489 * 1 2 3 22 22 H 1.09001 * 109.47195 * 60.00067 * 1 2 3 23 23 H 1.08996 * 109.47356 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47195 * 119.99933 * 2 1 3 25 25 H 1.08998 * 109.46618 * 240.00337 * 2 1 3 26 26 H 1.00907 * 110.99699 * 298.73043 * 3 2 1 27 27 H 0.96996 * 120.00068 * 179.97438 * 9 8 6 28 28 H 1.08002 * 120.00176 * 359.97438 * 15 14 4 29 29 H 1.08003 * 120.00076 * 180.27081 * 16 15 14 30 30 H 1.08997 * 109.47041 * 269.98310 * 18 17 16 31 31 H 1.09003 * 109.46527 * 29.97673 * 18 17 16 32 32 H 1.08996 * 109.47429 * 149.97739 * 18 17 16 33 33 H 1.07996 * 120.00308 * 180.02562 * 19 17 16 34 34 H 1.08004 * 120.00108 * 359.97438 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4828 1.4261 0.1247 5 1 3.9171 0.5833 -0.4131 6 6 4.0006 2.7152 -0.4592 7 1 4.5517 3.4062 0.1614 8 6 3.7710 3.0126 -1.7859 9 7 4.2234 4.1373 -2.2955 10 14 2.8172 1.8177 -2.8592 11 1 1.3693 2.1405 -2.7934 12 1 3.2863 1.9310 -4.2636 13 1 3.0379 0.4317 -2.3739 14 6 3.8653 1.3444 1.5800 15 6 3.2007 2.1171 2.5138 16 6 3.5487 2.0389 3.8494 17 6 4.5675 1.1947 4.2499 18 6 4.9494 1.1122 5.7054 19 6 5.2357 0.4259 3.3153 20 6 4.8847 0.5009 1.9804 21 1 -0.3633 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8934 -0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.7132 1.8769 -0.8261 27 1 4.0621 4.3463 -3.2289 28 1 2.4075 2.7797 2.2004 29 1 3.0265 2.6393 4.5796 30 1 5.7227 1.8495 5.9204 31 1 4.0738 1.3134 6.3226 32 1 5.3277 0.1140 5.9257 33 1 6.0313 -0.2340 3.6283 34 1 5.4066 -0.0999 1.2502 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261032278.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:11 Heat of formation + Delta-G solvation = -1.222996 kcal Electronic energy + Delta-G solvation = -14753.977536 eV Core-core repulsion = 12457.434304 eV Total energy + Delta-G solvation = -2296.543231 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.31753 -37.84436 -34.72656 -33.81072 -31.65782 -31.43634 -28.32032 -27.23784 -23.71135 -23.44648 -22.81696 -21.15481 -18.92450 -17.70377 -16.74020 -16.34825 -15.82978 -15.72709 -15.21397 -14.81655 -14.63762 -14.35936 -14.11128 -13.90188 -13.16913 -13.05082 -12.91311 -12.81070 -12.58035 -12.44851 -12.04229 -11.88502 -11.68891 -11.48044 -11.40272 -10.91353 -9.65180 -9.29355 -9.15115 -8.39924 -6.47275 0.64054 0.70019 1.17588 1.23638 1.31882 2.16550 2.84610 3.05495 3.60057 4.10706 4.13661 4.18654 4.29166 4.33193 4.43990 4.58115 4.63223 4.77066 4.85876 4.93102 4.95047 5.03166 5.05831 5.08981 5.28190 5.32903 5.36840 5.45648 5.68302 5.83512 5.97506 6.12415 6.34197 6.44027 6.51662 6.68449 7.15999 8.75533 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.029431 B = 0.009621 C = 0.008099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.154009 B = 2909.533690 C = 3456.408572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.039 3.961 3 N -0.686 5.686 4 C 0.221 3.779 5 H 0.001 0.999 6 C -0.512 4.512 7 H 0.035 0.965 8 C 0.021 3.979 9 N -0.936 5.936 10 Si 0.930 3.070 11 H -0.254 1.254 12 H -0.287 1.287 13 H -0.253 1.253 14 C -0.063 4.063 15 C -0.100 4.100 16 C -0.133 4.133 17 C -0.108 4.108 18 C -0.103 4.103 19 C -0.126 4.126 20 C -0.139 4.139 21 H 0.063 0.937 22 H 0.046 0.954 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.016 0.984 26 H 0.323 0.677 27 H 0.270 0.730 28 H 0.108 0.892 29 H 0.136 0.864 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.142 0.858 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.511 -9.821 10.425 14.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.090 4.090 3 N -0.323 5.323 4 C 0.114 3.886 5 H 0.019 0.981 6 C -0.550 4.550 7 H 0.054 0.946 8 C -0.178 4.178 9 N -0.575 5.575 10 Si 0.755 3.245 11 H -0.179 1.179 12 H -0.214 1.214 13 H -0.177 1.177 14 C -0.064 4.064 15 C -0.119 4.119 16 C -0.151 4.151 17 C -0.108 4.108 18 C -0.160 4.160 19 C -0.144 4.144 20 C -0.158 4.158 21 H 0.082 0.918 22 H 0.065 0.935 23 H 0.099 0.901 24 H 0.088 0.912 25 H 0.034 0.966 26 H 0.145 0.855 27 H 0.079 0.921 28 H 0.126 0.874 29 H 0.154 0.846 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.160 0.840 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.617 -9.622 10.935 15.008 hybrid contribution 0.119 -0.103 -2.053 2.059 sum -3.498 -9.725 8.882 13.627 Atomic orbital electron populations 1.21726 0.93370 1.02602 1.02080 1.22135 0.97122 0.89926 0.99779 1.60983 1.12402 1.14225 1.44696 1.18366 0.85042 0.94614 0.90594 0.98118 1.21178 1.34650 1.03982 0.95212 0.94641 1.25837 0.96283 0.96702 0.99027 1.70011 1.47290 1.25223 1.14987 0.86118 0.79901 0.80391 0.78090 1.17899 1.21419 1.17727 1.19990 0.95639 0.95501 0.95228 1.20961 0.99517 0.98383 0.93011 1.21264 0.98589 0.99896 0.95345 1.20216 0.96242 0.96827 0.97520 1.20755 1.02281 1.03160 0.89762 1.21173 1.00598 1.00632 0.92013 1.21178 0.97855 0.99854 0.96917 0.91776 0.93523 0.90070 0.91173 0.96599 0.85493 0.92084 0.87398 0.84649 0.90787 0.90679 0.90396 0.84012 0.86704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.06 10.22 71.98 0.74 -3.32 16 2 C 0.04 1.43 5.87 86.30 0.51 1.94 16 3 N -0.69 -30.32 5.34 -499.35 -2.67 -32.99 16 4 C 0.22 10.78 1.60 43.42 0.07 10.85 16 5 H 0.00 0.07 6.73 -2.39 -0.02 0.05 16 6 C -0.51 -29.80 9.20 25.60 0.24 -29.57 16 7 H 0.04 2.32 7.98 -2.91 -0.02 2.30 16 8 C 0.02 1.21 5.40 84.66 0.46 1.66 16 9 N -0.94 -58.11 13.96 21.45 0.30 -57.81 16 10 Si 0.93 43.62 24.43 68.60 1.68 45.30 16 11 H -0.25 -11.09 6.93 99.48 0.69 -10.40 16 12 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 13 H -0.25 -11.30 5.48 99.48 0.55 -10.76 16 14 C -0.06 -2.76 4.55 -19.87 -0.09 -2.85 16 15 C -0.10 -4.13 9.27 22.27 0.21 -3.92 16 16 C -0.13 -4.45 9.70 22.27 0.22 -4.23 16 17 C -0.11 -3.20 5.88 -19.87 -0.12 -3.32 16 18 C -0.10 -2.09 10.01 71.24 0.71 -1.37 16 19 C -0.13 -3.98 9.70 22.27 0.22 -3.76 16 20 C -0.14 -5.36 9.67 22.27 0.22 -5.14 16 21 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 22 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.07 2.48 7.89 -2.39 -0.02 2.46 16 25 H 0.02 0.59 6.93 -2.39 -0.02 0.57 16 26 H 0.32 14.97 4.53 -89.69 -0.41 14.56 16 27 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 28 H 0.11 4.72 7.89 -2.91 -0.02 4.69 16 29 H 0.14 3.74 8.06 -2.91 -0.02 3.71 16 30 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.32 8.09 -2.39 -0.02 1.30 16 32 H 0.08 1.31 8.09 -2.39 -0.02 1.29 16 33 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 34 H 0.11 4.21 8.00 -2.91 -0.02 4.18 16 Total: -1.00 -65.74 277.44 3.15 -62.58 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 0.48 Total: 25.97 kcal Atomic # 6 Polarization: -46.41 SS G_CDS: 3.36 Total: -43.04 kcal Atomic # 7 Polarization: -88.43 SS G_CDS: -2.37 Total: -90.80 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.68 Total: 45.30 kcal Total: -65.74 3.15 -62.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261032278.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.359 kcal (2) G-P(sol) polarization free energy of solvation -65.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds