Wall clock time and date at job start Mon Mar 30 2020 02:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46913 * 2 1 4 4 H 1.09002 * 109.47250 * 305.00074 * 3 2 1 5 5 C 1.52997 * 109.46737 * 64.99967 * 3 2 1 6 6 C 1.52995 * 109.46970 * 184.99649 * 3 2 1 7 7 H 1.09001 * 109.47684 * 302.45907 * 6 3 2 8 8 C 1.50702 * 109.47095 * 182.45504 * 6 3 2 9 9 H 1.07996 * 119.99893 * 333.39860 * 8 6 3 10 10 C 1.37879 * 119.99922 * 153.39002 * 8 6 3 11 11 N 1.31512 * 120.00013 * 7.26580 * 10 8 6 12 12 Si 1.86802 * 120.00061 * 187.26111 * 10 8 6 13 13 H 1.48502 * 109.47003 * 180.02562 * 12 10 8 14 14 H 1.48500 * 109.46879 * 300.00566 * 12 10 8 15 15 H 1.48495 * 109.46930 * 60.00253 * 12 10 8 16 16 C 1.50703 * 109.47077 * 62.46279 * 6 3 2 17 17 C 1.38644 * 120.79381 * 64.02643 * 16 6 3 18 18 C 1.38205 * 119.16421 * 179.75781 * 17 16 6 19 19 N 1.31870 * 120.76155 * 0.53190 * 18 17 16 20 20 C 1.31869 * 121.72718 * 359.74574 * 19 18 17 21 21 C 1.38202 * 120.76397 * 359.97137 * 20 19 18 22 22 H 1.08996 * 109.47360 * 299.99550 * 1 2 3 23 23 H 1.09002 * 109.46982 * 60.00223 * 1 2 3 24 24 H 1.09000 * 109.47401 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47360 * 240.00450 * 2 1 3 26 26 H 1.09000 * 109.47396 * 120.00105 * 2 1 3 27 27 H 1.09000 * 109.47344 * 179.97438 * 5 3 2 28 28 H 1.09001 * 109.47604 * 299.99451 * 5 3 2 29 29 H 1.09002 * 109.47163 * 60.00054 * 5 3 2 30 30 H 0.97003 * 120.00376 * 354.88453 * 11 10 8 31 31 H 1.08000 * 120.41607 * 0.02562 * 17 16 6 32 32 H 1.08003 * 119.61764 * 180.25444 * 18 17 16 33 33 H 1.07992 * 119.61630 * 180.02562 * 20 19 18 34 34 H 1.08004 * 120.41966 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6351 2.1265 1.3074 6 6 3.5647 1.4444 -0.1256 7 1 3.9975 0.8684 0.6923 8 6 4.0720 2.8622 -0.0650 9 1 3.4350 3.6773 -0.3749 10 6 5.3494 3.1186 0.3862 11 7 6.1737 2.1228 0.6278 12 14 5.9093 4.8805 0.6541 13 1 7.3134 4.8856 1.1377 14 1 5.8245 5.6270 -0.6268 15 1 5.0351 5.5294 1.6640 16 6 3.9611 0.8250 -1.4410 17 6 3.6054 1.4201 -2.6417 18 6 3.9911 0.8257 -3.8283 19 7 4.6797 -0.2989 -3.8267 20 6 5.0304 -0.8957 -2.7043 21 6 4.6852 -0.3569 -1.4794 22 1 -0.3634 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.9988 3.1541 1.3076 28 1 0.5488 2.1253 1.3969 29 1 2.0698 1.5875 2.1492 30 1 5.8611 1.2070 0.5603 31 1 3.0379 2.3390 -2.6495 32 1 3.7215 1.2853 -4.7678 33 1 5.5947 -1.8157 -2.7428 34 1 4.9758 -0.8501 -0.5635 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261040736.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:51 Heat of formation + Delta-G solvation = 0.443381 kcal Electronic energy + Delta-G solvation = -15087.938499 eV Core-core repulsion = 12791.467527 eV Total energy + Delta-G solvation = -2296.470972 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.45654 -36.70077 -33.34314 -31.50198 -30.41476 -29.46393 -26.45209 -24.45348 -22.90969 -22.49439 -21.00405 -19.09548 -16.94701 -15.90271 -15.31674 -14.75123 -14.49611 -13.86116 -13.62806 -13.32593 -13.01894 -12.80228 -12.37178 -12.29502 -11.57727 -11.37253 -11.05776 -10.94035 -10.81449 -10.65904 -10.20430 -10.05907 -9.94355 -9.55707 -9.04786 -8.72136 -8.50778 -8.36415 -8.08430 -6.45685 -4.17038 1.94089 2.23863 3.38867 3.39104 3.57932 4.44636 4.65516 5.12189 5.24215 5.41442 5.49736 5.55842 5.64340 5.82856 5.97647 6.01540 6.06296 6.15643 6.21807 6.27843 6.45243 6.45906 6.49424 6.55533 6.64405 6.80039 6.93807 7.07784 7.12516 7.24744 7.52090 7.57448 8.07267 8.32724 8.69794 8.75967 9.53299 10.93228 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.019270 B = 0.013390 C = 0.009164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.649959 B = 2090.583083 C = 3054.851330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.070 4.070 4 H 0.056 0.944 5 C -0.130 4.130 6 C 0.062 3.938 7 H 0.042 0.958 8 C -0.584 4.584 9 H 0.054 0.946 10 C 0.023 3.977 11 N -0.903 5.903 12 Si 1.064 2.936 13 H -0.283 1.283 14 H -0.288 1.288 15 H -0.286 1.286 16 C 0.017 3.983 17 C -0.161 4.161 18 C 0.079 3.921 19 N -0.512 5.512 20 C 0.085 3.915 21 C -0.185 4.185 22 H 0.054 0.946 23 H 0.048 0.952 24 H 0.043 0.957 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.034 0.966 29 H 0.043 0.957 30 H 0.271 0.729 31 H 0.125 0.875 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.220 -2.555 -1.647 7.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.089 4.089 4 H 0.074 0.926 5 C -0.187 4.187 6 C 0.043 3.957 7 H 0.060 0.940 8 C -0.622 4.622 9 H 0.072 0.928 10 C -0.182 4.182 11 N -0.538 5.538 12 Si 0.892 3.108 13 H -0.208 1.208 14 H -0.214 1.214 15 H -0.213 1.213 16 C 0.009 3.991 17 C -0.181 4.181 18 C -0.077 4.077 19 N -0.223 5.223 20 C -0.072 4.072 21 C -0.205 4.205 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.143 0.857 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.660 -2.006 -2.017 6.335 hybrid contribution -1.372 -0.528 0.326 1.506 sum -7.033 -2.534 -1.692 7.664 Atomic orbital electron populations 1.21807 0.96917 1.00459 1.01454 1.21665 0.94835 0.98321 1.01208 1.21079 0.96660 0.93508 0.97660 0.92560 1.21702 0.98089 1.01984 0.96968 1.18179 0.91396 0.96931 0.89165 0.94005 1.21755 1.02033 0.90639 1.47726 0.92786 1.25811 0.93140 1.05697 0.93585 1.70790 1.36252 1.00526 1.46197 0.83608 0.76366 0.74223 0.76630 1.20807 1.21448 1.21255 1.21259 0.89869 0.89909 0.98066 1.21861 1.02438 1.00946 0.92814 1.22512 0.95330 0.92240 0.97604 1.67520 1.13235 1.10407 1.31122 1.22458 0.97533 0.98873 0.88292 1.22014 1.02089 0.97715 0.98664 0.92739 0.93260 0.93766 0.92749 0.92707 0.91539 0.94684 0.93820 0.91716 0.85738 0.84216 0.84244 0.86228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.67 37.16 0.36 -1.76 16 2 C -0.12 -2.08 5.27 -26.73 -0.14 -2.22 16 3 C -0.07 -1.35 1.86 -90.62 -0.17 -1.52 16 4 H 0.06 1.10 7.65 -51.93 -0.40 0.70 16 5 C -0.13 -2.39 8.67 37.16 0.32 -2.07 16 6 C 0.06 1.41 1.22 -92.92 -0.11 1.30 16 7 H 0.04 1.04 6.74 -51.93 -0.35 0.69 16 8 C -0.58 -14.90 6.52 -34.44 -0.22 -15.12 16 9 H 0.05 1.38 7.70 -52.49 -0.40 0.97 16 10 C 0.02 0.63 5.45 -17.82 -0.10 0.54 16 11 N -0.90 -25.98 13.63 55.43 0.76 -25.23 16 12 Si 1.06 24.28 29.91 -169.99 -5.08 19.19 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 16 C 0.02 0.38 3.43 -104.32 -0.36 0.02 16 17 C -0.16 -3.32 8.91 -39.44 -0.35 -3.67 16 18 C 0.08 1.52 11.18 -17.55 -0.20 1.32 16 19 N -0.51 -10.31 10.36 -13.25 -0.14 -10.45 16 20 C 0.09 1.65 11.18 -17.55 -0.20 1.45 16 21 C -0.18 -3.82 9.42 -39.44 -0.37 -4.19 16 22 H 0.05 0.74 6.56 -51.93 -0.34 0.40 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.97 7.10 -51.93 -0.37 0.60 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.07 1.32 7.06 -51.93 -0.37 0.95 16 28 H 0.03 0.55 6.57 -51.93 -0.34 0.21 16 29 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.27 7.69 6.36 -40.82 -0.26 7.43 16 31 H 0.12 2.48 7.84 -52.49 -0.41 2.07 16 32 H 0.14 2.23 8.06 -52.48 -0.42 1.81 16 33 H 0.14 2.25 8.06 -52.49 -0.42 1.83 16 34 H 0.12 2.36 8.01 -52.48 -0.42 1.94 16 LS Contribution 278.25 15.07 4.19 4.19 Total: -1.00 -28.49 278.25 -6.80 -35.29 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -4.99 Total: 2.92 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: -1.54 Total: -25.92 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.62 Total: -35.67 kcal Atomic # 14 Polarization: 24.28 SS G_CDS: -5.08 Total: 19.19 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.49 -6.80 -35.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261040736.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.731 kcal (2) G-P(sol) polarization free energy of solvation -28.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds