Wall clock time and date at job start Mon Mar 30 2020 02:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46913 * 2 1 4 4 H 1.09002 * 109.47250 * 305.00074 * 3 2 1 5 5 C 1.52997 * 109.46737 * 64.99967 * 3 2 1 6 6 C 1.52995 * 109.46970 * 184.99649 * 3 2 1 7 7 H 1.09001 * 109.47684 * 302.45907 * 6 3 2 8 8 C 1.50702 * 109.47095 * 182.45504 * 6 3 2 9 9 H 1.07996 * 119.99893 * 333.39860 * 8 6 3 10 10 C 1.37879 * 119.99922 * 153.39002 * 8 6 3 11 11 N 1.31512 * 120.00013 * 7.26580 * 10 8 6 12 12 Si 1.86802 * 120.00061 * 187.26111 * 10 8 6 13 13 H 1.48502 * 109.47003 * 180.02562 * 12 10 8 14 14 H 1.48500 * 109.46879 * 300.00566 * 12 10 8 15 15 H 1.48495 * 109.46930 * 60.00253 * 12 10 8 16 16 C 1.50703 * 109.47077 * 62.46279 * 6 3 2 17 17 C 1.38644 * 120.79381 * 64.02643 * 16 6 3 18 18 C 1.38205 * 119.16421 * 179.75781 * 17 16 6 19 19 N 1.31870 * 120.76155 * 0.53190 * 18 17 16 20 20 C 1.31869 * 121.72718 * 359.74574 * 19 18 17 21 21 C 1.38202 * 120.76397 * 359.97137 * 20 19 18 22 22 H 1.08996 * 109.47360 * 299.99550 * 1 2 3 23 23 H 1.09002 * 109.46982 * 60.00223 * 1 2 3 24 24 H 1.09000 * 109.47401 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47360 * 240.00450 * 2 1 3 26 26 H 1.09000 * 109.47396 * 120.00105 * 2 1 3 27 27 H 1.09000 * 109.47344 * 179.97438 * 5 3 2 28 28 H 1.09001 * 109.47604 * 299.99451 * 5 3 2 29 29 H 1.09002 * 109.47163 * 60.00054 * 5 3 2 30 30 H 0.97003 * 120.00376 * 354.88453 * 11 10 8 31 31 H 1.08000 * 120.41607 * 0.02562 * 17 16 6 32 32 H 1.08003 * 119.61764 * 180.25444 * 18 17 16 33 33 H 1.07992 * 119.61630 * 180.02562 * 20 19 18 34 34 H 1.08004 * 120.41966 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6351 2.1265 1.3074 6 6 3.5647 1.4444 -0.1256 7 1 3.9975 0.8684 0.6923 8 6 4.0720 2.8622 -0.0650 9 1 3.4350 3.6773 -0.3749 10 6 5.3494 3.1186 0.3862 11 7 6.1737 2.1228 0.6278 12 14 5.9093 4.8805 0.6541 13 1 7.3134 4.8856 1.1377 14 1 5.8245 5.6270 -0.6268 15 1 5.0351 5.5294 1.6640 16 6 3.9611 0.8250 -1.4410 17 6 3.6054 1.4201 -2.6417 18 6 3.9911 0.8257 -3.8283 19 7 4.6797 -0.2989 -3.8267 20 6 5.0304 -0.8957 -2.7043 21 6 4.6852 -0.3569 -1.4794 22 1 -0.3634 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.9988 3.1541 1.3076 28 1 0.5488 2.1253 1.3969 29 1 2.0698 1.5875 2.1492 30 1 5.8611 1.2070 0.5603 31 1 3.0379 2.3390 -2.6495 32 1 3.7215 1.2853 -4.7678 33 1 5.5947 -1.8157 -2.7428 34 1 4.9758 -0.8501 -0.5635 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261040736.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:51 Heat of formation + Delta-G solvation = -14.360426 kcal Electronic energy + Delta-G solvation = -15088.580440 eV Core-core repulsion = 12791.467527 eV Total energy + Delta-G solvation = -2297.112913 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.05341 -38.29051 -35.08840 -33.24105 -31.98012 -30.93438 -28.14224 -26.20378 -24.44887 -24.08473 -22.62561 -20.66690 -18.86072 -17.49252 -16.93980 -16.32590 -15.97937 -15.64699 -15.16820 -14.97263 -14.52306 -14.30913 -14.02128 -13.85255 -13.10485 -12.89090 -12.65415 -12.56456 -12.37334 -12.21834 -11.99549 -11.59809 -11.39059 -11.23456 -10.83411 -10.60150 -10.22247 -9.93492 -9.86332 -8.55479 -6.26161 0.36688 0.60729 1.53268 1.59325 1.77161 2.57464 3.05650 3.24160 3.67245 3.94963 4.11027 4.13598 4.19113 4.35678 4.40435 4.47666 4.60174 4.78399 4.80984 4.89538 4.90575 4.98813 5.07833 5.11938 5.20865 5.26854 5.39721 5.46715 5.59832 5.66444 5.78699 5.97172 6.14938 6.27758 6.68984 7.13218 7.50798 8.84185 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.019270 B = 0.013390 C = 0.009164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.649959 B = 2090.583083 C = 3054.851330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C -0.067 4.067 4 H 0.055 0.945 5 C -0.126 4.126 6 C 0.063 3.937 7 H 0.012 0.988 8 C -0.579 4.579 9 H 0.051 0.949 10 C -0.027 4.027 11 N -0.937 5.937 12 Si 1.102 2.898 13 H -0.292 1.292 14 H -0.276 1.276 15 H -0.268 1.268 16 C 0.001 3.999 17 C -0.175 4.175 18 C 0.084 3.916 19 N -0.521 5.521 20 C 0.087 3.913 21 C -0.199 4.199 22 H 0.063 0.937 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.043 0.957 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.035 0.965 30 H 0.262 0.738 31 H 0.128 0.872 32 H 0.175 0.825 33 H 0.172 0.828 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.467 -2.439 -2.525 9.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C -0.086 4.086 4 H 0.073 0.927 5 C -0.183 4.183 6 C 0.044 3.956 7 H 0.030 0.970 8 C -0.617 4.617 9 H 0.069 0.931 10 C -0.226 4.226 11 N -0.575 5.575 12 Si 0.925 3.075 13 H -0.218 1.218 14 H -0.201 1.201 15 H -0.193 1.193 16 C -0.007 4.007 17 C -0.195 4.195 18 C -0.072 4.072 19 N -0.231 5.231 20 C -0.069 4.069 21 C -0.220 4.220 22 H 0.082 0.918 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.146 0.854 32 H 0.192 0.808 33 H 0.189 0.811 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.936 -1.891 -2.900 7.752 hybrid contribution -1.027 -0.614 0.563 1.323 sum -7.963 -2.506 -2.337 8.669 Atomic orbital electron populations 1.21759 0.94276 1.01900 1.02115 1.21563 0.97058 0.96276 1.00477 1.21021 0.94213 0.95321 0.98003 0.92654 1.21653 1.00035 1.00432 0.96178 1.18108 0.93569 0.95063 0.88890 0.97009 1.22026 1.01517 0.92058 1.46094 0.93068 1.26968 0.93946 1.08122 0.93565 1.70887 1.37011 1.00498 1.49081 0.83109 0.75747 0.71120 0.77480 1.21791 1.20124 1.19305 1.21194 0.90717 0.90878 0.97923 1.21978 1.03156 1.01338 0.92997 1.23029 0.94003 0.91686 0.98474 1.67644 1.13509 1.10774 1.31177 1.22926 0.96841 0.99608 0.87506 1.22130 1.02436 0.97908 0.99481 0.91846 0.92779 0.92019 0.93842 0.93132 0.93432 0.91552 0.94610 0.92767 0.85427 0.80759 0.81124 0.86308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.67 71.98 0.70 -3.00 16 2 C -0.12 -3.82 5.27 30.60 0.16 -3.65 16 3 C -0.07 -2.54 1.86 -10.79 -0.02 -2.56 16 4 H 0.06 2.11 7.65 -2.39 -0.02 2.09 16 5 C -0.13 -4.52 8.67 71.98 0.62 -3.90 16 6 C 0.06 2.89 1.22 -12.29 -0.01 2.87 16 7 H 0.01 0.61 6.74 -2.39 -0.02 0.59 16 8 C -0.58 -29.83 6.52 25.60 0.17 -29.67 16 9 H 0.05 2.61 7.70 -2.91 -0.02 2.59 16 10 C -0.03 -1.46 5.45 84.66 0.46 -1.00 16 11 N -0.94 -55.28 13.63 21.45 0.29 -54.99 16 12 Si 1.10 48.99 29.91 68.60 2.05 51.04 16 13 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 14 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 15 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 16 C 0.00 0.05 3.43 -19.67 -0.07 -0.01 16 17 C -0.17 -7.07 8.91 22.36 0.20 -6.87 16 18 C 0.08 3.05 11.18 84.68 0.95 4.00 16 19 N -0.52 -19.89 10.36 -195.85 -2.03 -21.92 16 20 C 0.09 3.26 11.18 84.68 0.95 4.21 16 21 C -0.20 -8.26 9.42 22.36 0.21 -8.05 16 22 H 0.06 1.52 6.56 -2.39 -0.02 1.50 16 23 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.04 1.51 7.10 -2.39 -0.02 1.49 16 26 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.05 1.86 7.06 -2.39 -0.02 1.84 16 28 H 0.07 1.94 6.57 -2.39 -0.02 1.93 16 29 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.26 15.40 6.36 -92.71 -0.59 14.81 16 31 H 0.13 4.98 7.84 -2.91 -0.02 4.96 16 32 H 0.18 5.02 8.06 -2.91 -0.02 5.00 16 33 H 0.17 5.15 8.06 -2.91 -0.02 5.12 16 34 H 0.12 4.82 8.01 -2.91 -0.02 4.79 16 Total: -1.00 -60.81 278.25 5.86 -54.95 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 1.24 Total: 18.54 kcal Atomic # 6 Polarization: -51.93 SS G_CDS: 4.31 Total: -47.62 kcal Atomic # 7 Polarization: -75.17 SS G_CDS: -1.74 Total: -76.91 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 2.05 Total: 51.04 kcal Total: -60.81 5.86 -54.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261040736.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.586 kcal (2) G-P(sol) polarization free energy of solvation -60.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds