Wall clock time and date at job start Mon Mar 30 2020 02:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47137 * 2 1 4 4 H 1.08992 * 109.47373 * 55.98639 * 3 2 1 5 5 C 1.53001 * 109.47103 * 175.99488 * 3 2 1 6 6 C 1.53006 * 109.46853 * 295.99113 * 3 2 1 7 7 H 1.09005 * 109.46815 * 56.48274 * 6 3 2 8 8 C 1.50693 * 109.47241 * 176.48823 * 6 3 2 9 9 H 1.07997 * 119.99969 * 114.58737 * 8 6 3 10 10 C 1.37881 * 120.00039 * 294.58715 * 8 6 3 11 11 N 1.31514 * 119.99758 * 351.66448 * 10 8 6 12 12 Si 1.86796 * 120.00050 * 171.66868 * 10 8 6 13 13 H 1.48498 * 109.47185 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47225 * 119.99961 * 12 10 8 15 15 H 1.48499 * 109.47243 * 239.99925 * 12 10 8 16 16 C 1.50699 * 109.46968 * 296.49312 * 6 3 2 17 17 C 1.38643 * 120.79584 * 103.34918 * 16 6 3 18 18 C 1.38204 * 119.16508 * 180.02562 * 17 16 6 19 19 N 1.31868 * 120.76458 * 0.02562 * 18 17 16 20 20 C 1.31865 * 121.72639 * 359.97188 * 19 18 17 21 21 C 1.38205 * 120.76364 * 0.02562 * 20 19 18 22 22 H 1.08998 * 109.46783 * 65.70071 * 1 2 3 23 23 H 1.08998 * 109.47119 * 185.69789 * 1 2 3 24 24 H 1.08996 * 109.47695 * 305.69985 * 1 2 3 25 25 H 1.08995 * 109.47905 * 239.99495 * 2 1 3 26 26 H 1.09003 * 109.47065 * 119.99545 * 2 1 3 27 27 H 1.09008 * 109.46814 * 173.08184 * 5 3 2 28 28 H 1.09001 * 109.46584 * 293.07630 * 5 3 2 29 29 H 1.08997 * 109.47546 * 53.08008 * 5 3 2 30 30 H 0.96998 * 119.99712 * 185.01168 * 11 10 8 31 31 H 1.08009 * 120.41705 * 359.97438 * 17 16 6 32 32 H 1.08005 * 119.61930 * 179.97438 * 18 17 16 33 33 H 1.07999 * 119.61936 * 179.97438 * 20 19 18 34 34 H 1.08000 * 120.41909 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6192 1.9767 0.8518 5 6 3.5667 1.4437 0.1008 6 6 1.6139 2.1340 -1.2967 7 1 0.5302 2.0781 -1.3991 8 6 2.0413 3.5786 -1.2594 9 1 2.7834 3.9404 -1.9557 10 6 1.4848 4.4386 -0.3364 11 7 0.4684 4.0452 0.3996 12 14 2.1744 6.1625 -0.1316 13 1 3.3077 6.3572 -1.0713 14 1 1.1126 7.1585 -0.4244 15 1 2.6509 6.3425 1.2634 16 6 2.2652 1.4475 -2.4695 17 6 1.5420 0.5837 -3.2776 18 6 2.1732 -0.0282 -4.3440 19 7 3.4471 0.2012 -4.5957 20 6 4.1658 1.0164 -3.8487 21 6 3.6024 1.6639 -2.7655 22 1 -0.3633 0.4229 -0.9366 23 1 -0.3633 -1.0226 0.1020 24 1 -0.3634 0.5996 0.8345 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.9381 2.4611 -0.0226 28 1 3.8666 1.0633 1.0772 29 1 3.9829 0.8077 -0.6805 30 1 0.0305 4.6720 0.9964 31 1 0.4986 0.3908 -3.0758 32 1 1.6169 -0.7027 -4.9780 33 1 5.2068 1.1792 -4.0857 34 1 4.1961 2.3307 -2.1577 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261040737.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:53 Heat of formation + Delta-G solvation = 8.913528 kcal Electronic energy + Delta-G solvation = -15271.662859 eV Core-core repulsion = 12975.559181 eV Total energy + Delta-G solvation = -2296.103679 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.64004 -36.57002 -32.56055 -31.72349 -30.65867 -29.14553 -27.13051 -24.13848 -22.75814 -22.40206 -21.29769 -18.69648 -16.55264 -15.67913 -15.19605 -14.92947 -14.54236 -14.04227 -13.41196 -13.07596 -12.99183 -12.78958 -12.30396 -11.97279 -11.62056 -11.06716 -11.03431 -10.95532 -10.74362 -10.50298 -10.01710 -9.92024 -9.78059 -9.52239 -9.08483 -8.66757 -8.51504 -8.42347 -8.27923 -6.10316 -4.13236 1.83650 2.12491 3.23678 3.33173 3.36362 4.35303 4.56758 5.03610 5.21030 5.49857 5.69795 5.84546 5.88032 5.88527 5.98296 6.02106 6.30334 6.34892 6.41377 6.46318 6.56870 6.63910 6.71875 6.85834 6.95281 6.98819 7.05791 7.29889 7.34225 7.47181 7.68599 7.79407 7.92105 8.29032 8.60174 8.87577 9.49364 10.96904 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.025351 B = 0.011660 C = 0.009479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.234302 B = 2400.717685 C = 2953.161776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 C -0.075 4.075 4 H 0.090 0.910 5 C -0.139 4.139 6 C 0.079 3.921 7 H 0.049 0.951 8 C -0.512 4.512 9 H 0.059 0.941 10 C 0.068 3.932 11 N -0.884 5.884 12 Si 0.886 3.114 13 H -0.272 1.272 14 H -0.285 1.285 15 H -0.283 1.283 16 C 0.013 3.987 17 C -0.185 4.185 18 C 0.082 3.918 19 N -0.510 5.510 20 C 0.076 3.924 21 C -0.160 4.160 22 H 0.055 0.945 23 H 0.033 0.967 24 H 0.056 0.944 25 H 0.047 0.953 26 H 0.041 0.959 27 H 0.064 0.936 28 H 0.027 0.973 29 H 0.039 0.961 30 H 0.261 0.739 31 H 0.123 0.877 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.392 -5.619 -2.073 6.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.157 4.157 3 C -0.094 4.094 4 H 0.108 0.892 5 C -0.196 4.196 6 C 0.061 3.939 7 H 0.067 0.933 8 C -0.550 4.550 9 H 0.077 0.923 10 C -0.134 4.134 11 N -0.522 5.522 12 Si 0.714 3.286 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.209 1.209 16 C 0.005 3.995 17 C -0.205 4.205 18 C -0.075 4.075 19 N -0.220 5.220 20 C -0.079 4.079 21 C -0.180 4.180 22 H 0.074 0.926 23 H 0.052 0.948 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.046 0.954 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.141 0.859 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.710 -5.988 -2.594 7.066 hybrid contribution -0.157 1.440 0.898 1.704 sum 2.553 -4.548 -1.697 5.484 Atomic orbital electron populations 1.21714 0.96418 0.99294 1.02542 1.21648 0.95727 0.98627 0.99727 1.21122 0.94106 0.92721 1.01452 0.89218 1.21926 0.97547 1.01624 0.98503 1.18013 0.96299 0.93182 0.86451 0.93263 1.21118 1.23993 0.93215 1.16684 0.92260 1.24913 0.94894 0.98194 0.95449 1.69920 1.20799 1.34950 1.26524 0.86626 0.79294 0.84657 0.78046 1.19706 1.21116 1.20920 1.21045 0.93105 0.90274 0.95079 1.22093 1.01207 0.99773 0.97389 1.22489 0.91047 0.98180 0.95797 1.67527 1.07573 1.16908 1.29992 1.22593 0.99309 0.93756 0.92271 1.22205 0.96532 1.00970 0.98264 0.92619 0.94756 0.92495 0.93467 0.94013 0.91715 0.95364 0.94180 0.92902 0.85861 0.84138 0.84079 0.84632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.50 37.16 0.35 -2.19 16 2 C -0.12 -2.23 5.25 -26.73 -0.14 -2.37 16 3 C -0.07 -1.60 2.07 -90.61 -0.19 -1.78 16 4 H 0.09 2.18 6.78 -51.93 -0.35 1.83 16 5 C -0.14 -2.73 7.67 37.16 0.28 -2.44 16 6 C 0.08 1.79 1.54 -92.92 -0.14 1.65 16 7 H 0.05 1.23 6.33 -51.93 -0.33 0.90 16 8 C -0.51 -12.93 6.76 -34.44 -0.23 -13.16 16 9 H 0.06 1.51 6.77 -52.49 -0.36 1.15 16 10 C 0.07 1.76 5.19 -17.82 -0.09 1.67 16 11 N -0.88 -23.70 12.09 55.43 0.67 -23.03 16 12 Si 0.89 20.35 29.55 -169.99 -5.02 15.33 16 13 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 C 0.01 0.26 3.67 -104.32 -0.38 -0.12 16 17 C -0.18 -3.41 9.04 -39.44 -0.36 -3.76 16 18 C 0.08 1.41 11.18 -17.55 -0.20 1.21 16 19 N -0.51 -9.35 10.36 -13.25 -0.14 -9.49 16 20 C 0.08 1.35 11.18 -17.55 -0.20 1.16 16 21 C -0.16 -3.07 6.65 -39.44 -0.26 -3.33 16 22 H 0.05 1.02 6.39 -51.93 -0.33 0.69 16 23 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 25 H 0.05 0.87 6.65 -51.93 -0.35 0.53 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.06 1.34 6.66 -51.92 -0.35 0.99 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.04 0.74 6.03 -51.93 -0.31 0.43 16 30 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 31 H 0.12 2.11 7.70 -52.48 -0.40 1.70 16 32 H 0.14 1.97 8.06 -52.48 -0.42 1.55 16 33 H 0.14 2.07 8.06 -52.49 -0.42 1.65 16 34 H 0.14 2.59 6.07 -52.49 -0.32 2.27 16 LS Contribution 269.43 15.07 4.06 4.06 Total: -1.00 -26.73 269.43 -6.75 -33.47 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -4.77 Total: 3.14 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: -1.55 Total: -23.48 kcal Atomic # 7 Polarization: -33.05 SS G_CDS: 0.53 Total: -32.52 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -26.73 -6.75 -33.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261040737.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.388 kcal (2) G-P(sol) polarization free energy of solvation -26.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds