Wall clock time and date at job start Mon Mar 30 2020 02:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47137 * 2 1 4 4 H 1.08992 * 109.47373 * 55.98639 * 3 2 1 5 5 C 1.53001 * 109.47103 * 175.99488 * 3 2 1 6 6 C 1.53006 * 109.46853 * 295.99113 * 3 2 1 7 7 H 1.09005 * 109.46815 * 56.48274 * 6 3 2 8 8 C 1.50693 * 109.47241 * 176.48823 * 6 3 2 9 9 H 1.07997 * 119.99969 * 114.58737 * 8 6 3 10 10 C 1.37881 * 120.00039 * 294.58715 * 8 6 3 11 11 N 1.31514 * 119.99758 * 351.66448 * 10 8 6 12 12 Si 1.86796 * 120.00050 * 171.66868 * 10 8 6 13 13 H 1.48498 * 109.47185 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47225 * 119.99961 * 12 10 8 15 15 H 1.48499 * 109.47243 * 239.99925 * 12 10 8 16 16 C 1.50699 * 109.46968 * 296.49312 * 6 3 2 17 17 C 1.38643 * 120.79584 * 103.34918 * 16 6 3 18 18 C 1.38204 * 119.16508 * 180.02562 * 17 16 6 19 19 N 1.31868 * 120.76458 * 0.02562 * 18 17 16 20 20 C 1.31865 * 121.72639 * 359.97188 * 19 18 17 21 21 C 1.38205 * 120.76364 * 0.02562 * 20 19 18 22 22 H 1.08998 * 109.46783 * 65.70071 * 1 2 3 23 23 H 1.08998 * 109.47119 * 185.69789 * 1 2 3 24 24 H 1.08996 * 109.47695 * 305.69985 * 1 2 3 25 25 H 1.08995 * 109.47905 * 239.99495 * 2 1 3 26 26 H 1.09003 * 109.47065 * 119.99545 * 2 1 3 27 27 H 1.09008 * 109.46814 * 173.08184 * 5 3 2 28 28 H 1.09001 * 109.46584 * 293.07630 * 5 3 2 29 29 H 1.08997 * 109.47546 * 53.08008 * 5 3 2 30 30 H 0.96998 * 119.99712 * 185.01168 * 11 10 8 31 31 H 1.08009 * 120.41705 * 359.97438 * 17 16 6 32 32 H 1.08005 * 119.61930 * 179.97438 * 18 17 16 33 33 H 1.07999 * 119.61936 * 179.97438 * 20 19 18 34 34 H 1.08000 * 120.41909 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6192 1.9767 0.8518 5 6 3.5667 1.4437 0.1008 6 6 1.6139 2.1340 -1.2967 7 1 0.5302 2.0781 -1.3991 8 6 2.0413 3.5786 -1.2594 9 1 2.7834 3.9404 -1.9557 10 6 1.4848 4.4386 -0.3364 11 7 0.4684 4.0452 0.3996 12 14 2.1744 6.1625 -0.1316 13 1 3.3077 6.3572 -1.0713 14 1 1.1126 7.1585 -0.4244 15 1 2.6509 6.3425 1.2634 16 6 2.2652 1.4475 -2.4695 17 6 1.5420 0.5837 -3.2776 18 6 2.1732 -0.0282 -4.3440 19 7 3.4471 0.2012 -4.5957 20 6 4.1658 1.0164 -3.8487 21 6 3.6024 1.6639 -2.7655 22 1 -0.3633 0.4229 -0.9366 23 1 -0.3633 -1.0226 0.1020 24 1 -0.3634 0.5996 0.8345 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.9381 2.4611 -0.0226 28 1 3.8666 1.0633 1.0772 29 1 3.9829 0.8077 -0.6805 30 1 0.0305 4.6720 0.9964 31 1 0.4986 0.3908 -3.0758 32 1 1.6169 -0.7027 -4.9780 33 1 5.2068 1.1792 -4.0857 34 1 4.1961 2.3307 -2.1577 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261040737.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:52 Heat of formation + Delta-G solvation = -4.566467 kcal Electronic energy + Delta-G solvation = -15272.247396 eV Core-core repulsion = 12975.559181 eV Total energy + Delta-G solvation = -2296.688215 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.11250 -38.18256 -34.41609 -33.29552 -32.08683 -30.69338 -28.89659 -25.90331 -24.28425 -23.86282 -22.85327 -20.34326 -18.38365 -17.26019 -16.74074 -16.36226 -16.30152 -15.69109 -14.97773 -14.51604 -14.44016 -14.35020 -14.04170 -13.56871 -13.31619 -12.86686 -12.64078 -12.53315 -12.43516 -12.06565 -11.79728 -11.58403 -11.44488 -11.15526 -10.83970 -10.41923 -10.14134 -9.94140 -9.81305 -8.08572 -6.15617 0.43027 0.63511 1.38747 1.43873 1.52132 2.44088 3.11643 3.22968 3.75168 4.13176 4.17628 4.33835 4.38727 4.45502 4.48238 4.53143 4.72642 4.90281 4.92175 5.01609 5.06791 5.10204 5.20139 5.28269 5.41203 5.45307 5.49551 5.66028 5.72466 5.78105 5.94695 6.07697 6.12094 6.40425 6.91519 7.20234 7.48910 8.97863 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.025351 B = 0.011660 C = 0.009479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.234302 B = 2400.717685 C = 2953.161776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 C -0.073 4.073 4 H 0.053 0.947 5 C -0.130 4.130 6 C 0.085 3.915 7 H 0.019 0.981 8 C -0.518 4.518 9 H 0.053 0.947 10 C 0.024 3.976 11 N -0.910 5.910 12 Si 0.938 3.062 13 H -0.268 1.268 14 H -0.286 1.286 15 H -0.282 1.282 16 C -0.007 4.007 17 C -0.191 4.191 18 C 0.088 3.912 19 N -0.518 5.518 20 C 0.082 3.918 21 C -0.171 4.171 22 H 0.043 0.957 23 H 0.063 0.937 24 H 0.037 0.963 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.051 0.949 30 H 0.259 0.741 31 H 0.132 0.868 32 H 0.176 0.824 33 H 0.172 0.828 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.306 -6.727 -3.008 8.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.150 4.150 3 C -0.092 4.092 4 H 0.072 0.928 5 C -0.188 4.188 6 C 0.066 3.934 7 H 0.037 0.963 8 C -0.556 4.556 9 H 0.071 0.929 10 C -0.175 4.175 11 N -0.549 5.549 12 Si 0.765 3.235 13 H -0.192 1.192 14 H -0.213 1.213 15 H -0.208 1.208 16 C -0.015 4.015 17 C -0.211 4.211 18 C -0.068 4.068 19 N -0.229 5.229 20 C -0.074 4.074 21 C -0.190 4.190 22 H 0.063 0.937 23 H 0.082 0.918 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.149 0.851 32 H 0.193 0.807 33 H 0.189 0.811 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.632 -7.098 -3.535 8.722 hybrid contribution -0.448 1.757 1.136 2.139 sum 3.184 -5.341 -2.399 6.665 Atomic orbital electron populations 1.21648 0.96014 1.00635 1.01120 1.21560 0.96061 0.96768 1.00599 1.20985 0.95097 0.93953 0.99203 0.92810 1.21823 0.96263 1.00933 0.99738 1.17801 0.94587 0.92515 0.88483 0.96289 1.21396 1.23319 0.94801 1.16055 0.92891 1.25522 0.95227 1.01229 0.95527 1.70030 1.21861 1.35800 1.27250 0.85806 0.78654 0.81180 0.77869 1.19217 1.21251 1.20845 1.20896 0.93975 0.91530 0.95068 1.22216 1.01643 0.99621 0.97577 1.22997 0.90847 0.97676 0.95293 1.67651 1.08062 1.17070 1.30068 1.23012 1.00596 0.92610 0.91144 1.22194 0.96085 1.01597 0.99156 0.93747 0.91775 0.94387 0.92873 0.92578 0.93401 0.93917 0.93001 0.93140 0.85058 0.80687 0.81066 0.85167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.82 9.50 71.98 0.68 -4.13 16 2 C -0.11 -4.07 5.25 30.59 0.16 -3.91 16 3 C -0.07 -3.14 2.07 -10.79 -0.02 -3.16 16 4 H 0.05 2.69 6.78 -2.39 -0.02 2.68 16 5 C -0.13 -5.05 7.67 71.98 0.55 -4.50 16 6 C 0.08 3.90 1.54 -12.29 -0.02 3.88 16 7 H 0.02 0.98 6.33 -2.38 -0.02 0.97 16 8 C -0.52 -26.57 6.76 25.60 0.17 -26.39 16 9 H 0.05 2.73 6.77 -2.91 -0.02 2.71 16 10 C 0.02 1.29 5.19 84.66 0.44 1.73 16 11 N -0.91 -50.17 12.09 21.45 0.26 -49.91 16 12 Si 0.94 42.26 29.55 68.60 2.03 44.28 16 13 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 14 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 15 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 16 C -0.01 -0.27 3.67 -19.67 -0.07 -0.34 16 17 C -0.19 -6.73 9.04 22.36 0.20 -6.53 16 18 C 0.09 2.78 11.18 84.68 0.95 3.73 16 19 N -0.52 -17.42 10.36 -195.84 -2.03 -19.45 16 20 C 0.08 2.69 11.18 84.68 0.95 3.63 16 21 C -0.17 -6.33 6.65 22.36 0.15 -6.18 16 22 H 0.04 1.64 6.39 -2.39 -0.02 1.62 16 23 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.05 1.87 6.65 -2.39 -0.02 1.85 16 26 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.05 1.98 6.66 -2.38 -0.02 1.96 16 28 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.05 1.86 6.03 -2.39 -0.01 1.85 16 30 H 0.26 13.77 8.32 -92.71 -0.77 13.00 16 31 H 0.13 4.33 7.70 -2.91 -0.02 4.31 16 32 H 0.18 4.21 8.06 -2.91 -0.02 4.19 16 33 H 0.17 4.45 8.06 -2.91 -0.02 4.43 16 34 H 0.13 4.91 6.07 -2.91 -0.02 4.89 16 Total: -1.00 -56.82 269.43 5.47 -51.35 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 1.07 Total: 15.91 kcal Atomic # 6 Polarization: -46.32 SS G_CDS: 4.14 Total: -42.18 kcal Atomic # 7 Polarization: -67.60 SS G_CDS: -1.77 Total: -69.37 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Total: -56.82 5.47 -51.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261040737.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.788 kcal (2) G-P(sol) polarization free energy of solvation -56.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds