Wall clock time and date at job start Mon Mar 30 2020 02:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46997 * 2 1 4 4 H 1.09001 * 109.47629 * 54.29899 * 3 2 1 5 5 C 1.53005 * 109.47188 * 294.29790 * 3 2 1 6 6 C 1.53002 * 109.47024 * 174.30298 * 3 2 1 7 7 H 1.08995 * 109.47622 * 59.06027 * 6 3 2 8 8 C 1.50694 * 109.46931 * 299.05864 * 6 3 2 9 9 H 1.08004 * 120.00284 * 332.51370 * 8 6 3 10 10 C 1.37882 * 120.00208 * 152.23502 * 8 6 3 11 11 N 1.31513 * 119.99506 * 354.55449 * 10 8 6 12 12 Si 1.86796 * 120.00098 * 174.55396 * 10 8 6 13 13 H 1.48500 * 109.47274 * 90.00235 * 12 10 8 14 14 H 1.48504 * 109.46992 * 209.99545 * 12 10 8 15 15 H 1.48497 * 109.47280 * 329.99799 * 12 10 8 16 16 C 1.50699 * 109.47014 * 179.06336 * 6 3 2 17 17 C 1.38672 * 120.41798 * 239.71852 * 16 6 3 18 18 C 1.38629 * 118.42206 * 179.78499 * 17 16 6 19 19 C 1.38229 * 119.16086 * 0.50677 * 18 17 16 20 20 N 1.31852 * 120.76070 * 359.73390 * 19 18 17 21 21 C 1.31884 * 121.72880 * 359.97438 * 20 19 18 22 22 H 1.08997 * 109.47397 * 60.00225 * 1 2 3 23 23 H 1.08995 * 109.47085 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46661 * 299.99750 * 1 2 3 25 25 H 1.08994 * 109.47036 * 239.99727 * 2 1 3 26 26 H 1.08997 * 109.47397 * 119.99775 * 2 1 3 27 27 H 1.08995 * 109.47467 * 180.02562 * 5 3 2 28 28 H 1.09001 * 109.46925 * 300.00540 * 5 3 2 29 29 H 1.09004 * 109.46619 * 60.00242 * 5 3 2 30 30 H 0.96999 * 119.99848 * 180.02562 * 11 10 8 31 31 H 1.07999 * 120.78927 * 0.02562 * 17 16 6 32 32 H 1.08006 * 120.41834 * 180.22438 * 18 17 16 33 33 H 1.07996 * 119.61833 * 179.74721 * 19 18 17 34 34 H 1.08003 * 119.61761 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5957 1.9850 0.8345 5 6 1.6504 2.1212 -1.3148 6 6 3.5633 1.4449 0.1432 7 1 4.0068 0.8882 -0.6823 8 6 3.9460 0.7970 1.4488 9 1 3.2625 0.8215 2.2847 10 6 5.1666 0.1681 1.5747 11 7 5.9511 0.0395 0.5271 12 14 5.7057 -0.5014 3.2331 13 1 5.2468 -1.9068 3.3726 14 1 7.1869 -0.4527 3.3288 15 1 5.1123 0.3230 4.3164 16 6 4.0678 2.8647 0.1201 17 6 4.9648 3.2753 -0.8544 18 6 5.3984 4.5920 -0.8395 19 6 4.9336 5.4430 0.1457 20 7 4.0845 5.0165 1.0598 21 6 3.6464 3.7726 1.0729 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 2.0140 3.1487 -1.3150 28 1 2.0946 1.5787 -2.1493 29 1 0.5651 2.1195 -1.4168 30 1 6.8096 -0.4033 0.6155 31 1 5.3143 2.5868 -1.6095 32 1 6.0940 4.9472 -1.5854 33 1 5.2697 6.4691 0.1668 34 1 2.9508 3.4597 1.8375 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261107791.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:42 Heat of formation + Delta-G solvation = 3.768819 kcal Electronic energy + Delta-G solvation = -15019.311038 eV Core-core repulsion = 12722.984268 eV Total energy + Delta-G solvation = -2296.326770 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.33455 -36.43528 -32.93610 -31.63578 -30.89155 -28.67345 -27.16287 -23.75829 -23.20946 -22.58712 -20.61675 -18.79291 -16.61498 -16.22418 -15.15032 -14.67869 -14.25649 -14.10155 -13.53989 -13.01974 -12.80865 -12.49293 -12.09745 -11.96647 -11.64217 -11.48729 -11.31576 -10.99069 -10.75375 -10.66016 -10.26253 -10.00211 -9.72663 -9.42600 -9.05805 -8.79767 -8.69233 -8.38324 -7.80170 -6.12562 -4.14498 2.07369 2.28150 3.25883 3.33635 3.37466 4.36392 4.76982 5.19772 5.29550 5.59086 5.65295 5.73526 5.83248 5.93817 6.03284 6.05179 6.14093 6.20240 6.25963 6.47123 6.52248 6.63596 6.64528 6.72208 6.89073 7.02471 7.05385 7.13278 7.26408 7.43982 7.69974 7.73562 7.87039 8.27422 8.85501 8.91226 9.48785 10.95847 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.017273 B = 0.014383 C = 0.009239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.637101 B = 1946.242229 C = 3030.037948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.108 4.108 3 C -0.077 4.077 4 H 0.054 0.946 5 C -0.146 4.146 6 C 0.074 3.926 7 H 0.063 0.937 8 C -0.506 4.506 9 H 0.059 0.941 10 C 0.068 3.932 11 N -0.884 5.884 12 Si 0.887 3.113 13 H -0.280 1.280 14 H -0.287 1.287 15 H -0.272 1.272 16 C -0.058 4.058 17 C -0.083 4.083 18 C -0.179 4.179 19 C 0.052 3.948 20 N -0.496 5.496 21 C 0.091 3.909 22 H 0.046 0.954 23 H 0.042 0.958 24 H 0.047 0.953 25 H 0.051 0.949 26 H 0.076 0.924 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.262 0.738 31 H 0.124 0.876 32 H 0.117 0.883 33 H 0.137 0.863 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.790 3.313 -3.159 6.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.145 4.145 3 C -0.095 4.095 4 H 0.073 0.927 5 C -0.203 4.203 6 C 0.055 3.945 7 H 0.081 0.919 8 C -0.543 4.543 9 H 0.078 0.922 10 C -0.135 4.135 11 N -0.521 5.521 12 Si 0.714 3.286 13 H -0.206 1.206 14 H -0.213 1.213 15 H -0.197 1.197 16 C -0.060 4.060 17 C -0.109 4.109 18 C -0.199 4.199 19 C -0.105 4.105 20 N -0.205 5.205 21 C -0.066 4.066 22 H 0.065 0.935 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.094 0.906 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.142 0.858 32 H 0.135 0.865 33 H 0.154 0.846 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.895 3.824 -2.577 6.725 hybrid contribution 0.990 -0.945 0.240 1.389 sum -3.905 2.879 -2.337 5.386 Atomic orbital electron populations 1.21871 0.97908 1.00242 1.00872 1.21432 0.93082 0.97338 1.02661 1.21175 0.97760 0.94997 0.95590 0.92711 1.21929 0.99574 1.00123 0.98691 1.18041 0.89713 0.87300 0.99477 0.91859 1.20976 1.01700 1.34275 0.97372 0.92246 1.24974 0.96791 0.95405 0.96322 1.69911 1.10886 1.42627 1.28723 0.86667 0.77900 0.79313 0.84677 1.20556 1.21266 1.19691 1.21695 0.93999 0.98520 0.91836 1.21496 0.96267 0.94637 0.98533 1.21964 1.02047 0.95342 1.00588 1.22307 0.96393 0.99294 0.92477 1.67527 1.11240 1.17720 1.23999 1.22470 0.98566 0.88006 0.97525 0.93468 0.93870 0.93418 0.93042 0.90574 0.93708 0.93390 0.93943 0.92836 0.85825 0.86523 0.84562 0.83773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.68 37.16 0.36 -1.91 16 2 C -0.11 -1.97 5.26 -26.73 -0.14 -2.11 16 3 C -0.08 -1.48 1.77 -90.62 -0.16 -1.64 16 4 H 0.05 1.06 7.45 -51.93 -0.39 0.67 16 5 C -0.15 -2.51 8.70 37.16 0.32 -2.19 16 6 C 0.07 1.68 1.61 -92.93 -0.15 1.53 16 7 H 0.06 1.60 7.24 -51.93 -0.38 1.23 16 8 C -0.51 -12.78 6.64 -34.44 -0.23 -13.01 16 9 H 0.06 1.49 7.82 -52.48 -0.41 1.08 16 10 C 0.07 1.80 5.45 -17.82 -0.10 1.70 16 11 N -0.88 -24.31 12.88 55.43 0.71 -23.59 16 12 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 16 C -0.06 -1.28 3.47 -104.48 -0.36 -1.64 16 17 C -0.08 -1.73 9.81 -39.28 -0.39 -2.12 16 18 C -0.18 -3.29 10.11 -39.44 -0.40 -3.69 16 19 C 0.05 0.96 11.18 -17.55 -0.20 0.77 16 20 N -0.50 -10.36 10.36 -13.25 -0.14 -10.50 16 21 C 0.09 1.97 10.01 -17.55 -0.18 1.80 16 22 H 0.05 0.66 6.59 -51.93 -0.34 0.32 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.08 1.53 7.06 -51.93 -0.37 1.16 16 27 H 0.04 0.79 7.19 -51.93 -0.37 0.42 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.04 0.64 6.59 -51.93 -0.34 0.30 16 30 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.12 2.54 8.00 -52.49 -0.42 2.12 16 32 H 0.12 1.76 8.06 -52.48 -0.42 1.34 16 33 H 0.14 2.06 8.06 -52.49 -0.42 1.64 16 34 H 0.14 3.02 7.60 -52.48 -0.40 2.62 16 LS Contribution 280.31 15.07 4.22 4.22 Total: -1.00 -27.23 280.31 -6.92 -34.15 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -5.09 Total: 2.44 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: -1.61 Total: -22.50 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 0.58 Total: -34.09 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.23 -6.92 -34.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261107791.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.916 kcal (2) G-P(sol) polarization free energy of solvation -27.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds