Wall clock time and date at job start Mon Mar 30 2020 02:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46997 * 2 1 4 4 H 1.09001 * 109.47629 * 54.29899 * 3 2 1 5 5 C 1.53005 * 109.47188 * 294.29790 * 3 2 1 6 6 C 1.53002 * 109.47024 * 174.30298 * 3 2 1 7 7 H 1.08995 * 109.47622 * 59.06027 * 6 3 2 8 8 C 1.50694 * 109.46931 * 299.05864 * 6 3 2 9 9 H 1.08004 * 120.00284 * 332.51370 * 8 6 3 10 10 C 1.37882 * 120.00208 * 152.23502 * 8 6 3 11 11 N 1.31513 * 119.99506 * 354.55449 * 10 8 6 12 12 Si 1.86796 * 120.00098 * 174.55396 * 10 8 6 13 13 H 1.48500 * 109.47274 * 90.00235 * 12 10 8 14 14 H 1.48504 * 109.46992 * 209.99545 * 12 10 8 15 15 H 1.48497 * 109.47280 * 329.99799 * 12 10 8 16 16 C 1.50699 * 109.47014 * 179.06336 * 6 3 2 17 17 C 1.38672 * 120.41798 * 239.71852 * 16 6 3 18 18 C 1.38629 * 118.42206 * 179.78499 * 17 16 6 19 19 C 1.38229 * 119.16086 * 0.50677 * 18 17 16 20 20 N 1.31852 * 120.76070 * 359.73390 * 19 18 17 21 21 C 1.31884 * 121.72880 * 359.97438 * 20 19 18 22 22 H 1.08997 * 109.47397 * 60.00225 * 1 2 3 23 23 H 1.08995 * 109.47085 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46661 * 299.99750 * 1 2 3 25 25 H 1.08994 * 109.47036 * 239.99727 * 2 1 3 26 26 H 1.08997 * 109.47397 * 119.99775 * 2 1 3 27 27 H 1.08995 * 109.47467 * 180.02562 * 5 3 2 28 28 H 1.09001 * 109.46925 * 300.00540 * 5 3 2 29 29 H 1.09004 * 109.46619 * 60.00242 * 5 3 2 30 30 H 0.96999 * 119.99848 * 180.02562 * 11 10 8 31 31 H 1.07999 * 120.78927 * 0.02562 * 17 16 6 32 32 H 1.08006 * 120.41834 * 180.22438 * 18 17 16 33 33 H 1.07996 * 119.61833 * 179.74721 * 19 18 17 34 34 H 1.08003 * 119.61761 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5957 1.9850 0.8345 5 6 1.6504 2.1212 -1.3148 6 6 3.5633 1.4449 0.1432 7 1 4.0068 0.8882 -0.6823 8 6 3.9460 0.7970 1.4488 9 1 3.2625 0.8215 2.2847 10 6 5.1666 0.1681 1.5747 11 7 5.9511 0.0395 0.5271 12 14 5.7057 -0.5014 3.2331 13 1 5.2468 -1.9068 3.3726 14 1 7.1869 -0.4527 3.3288 15 1 5.1123 0.3230 4.3164 16 6 4.0678 2.8647 0.1201 17 6 4.9648 3.2753 -0.8544 18 6 5.3984 4.5920 -0.8395 19 6 4.9336 5.4430 0.1457 20 7 4.0845 5.0165 1.0598 21 6 3.6464 3.7726 1.0729 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 2.0140 3.1487 -1.3150 28 1 2.0946 1.5787 -2.1493 29 1 0.5651 2.1195 -1.4168 30 1 6.8096 -0.4033 0.6155 31 1 5.3143 2.5868 -1.6095 32 1 6.0940 4.9472 -1.5854 33 1 5.2697 6.4691 0.1668 34 1 2.9508 3.4597 1.8375 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261107791.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:42 Heat of formation + Delta-G solvation = -10.045825 kcal Electronic energy + Delta-G solvation = -15019.910086 eV Core-core repulsion = 12722.984268 eV Total energy + Delta-G solvation = -2296.925818 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.92811 -38.02017 -34.73027 -33.32429 -32.46692 -30.10087 -28.91338 -25.51053 -24.72504 -24.17719 -22.18852 -20.38836 -18.54991 -17.77351 -16.75749 -16.56581 -15.77892 -15.58483 -15.19081 -14.47326 -14.35149 -14.08938 -13.70957 -13.64543 -13.29953 -12.96322 -12.83215 -12.71490 -12.44416 -12.23356 -12.01500 -11.62465 -11.24112 -11.05831 -10.81277 -10.59411 -10.37529 -10.09461 -9.43544 -8.12808 -6.18377 0.50817 0.67575 1.37976 1.41123 1.48902 2.41885 3.13013 3.25447 3.79397 4.13299 4.21731 4.30937 4.35147 4.43905 4.49416 4.64225 4.71209 4.82158 4.88268 4.92711 5.13828 5.17867 5.21343 5.29681 5.37903 5.42985 5.48955 5.58251 5.70454 5.72455 5.88074 6.01417 6.11343 6.38020 6.93262 7.27425 7.46367 8.94745 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.017273 B = 0.014383 C = 0.009239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.637101 B = 1946.242229 C = 3030.037948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 C -0.073 4.073 4 H 0.053 0.947 5 C -0.136 4.136 6 C 0.078 3.922 7 H 0.030 0.970 8 C -0.506 4.506 9 H 0.055 0.945 10 C 0.021 3.979 11 N -0.915 5.915 12 Si 0.937 3.063 13 H -0.274 1.274 14 H -0.290 1.290 15 H -0.270 1.270 16 C -0.075 4.075 17 C -0.100 4.100 18 C -0.169 4.169 19 C 0.054 3.946 20 N -0.509 5.509 21 C 0.078 3.922 22 H 0.061 0.939 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.042 0.958 26 H 0.050 0.950 27 H 0.037 0.963 28 H 0.044 0.956 29 H 0.067 0.933 30 H 0.259 0.741 31 H 0.117 0.883 32 H 0.155 0.845 33 H 0.178 0.822 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.366 4.563 -3.312 7.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.144 4.144 3 C -0.092 4.092 4 H 0.072 0.928 5 C -0.193 4.193 6 C 0.059 3.941 7 H 0.048 0.952 8 C -0.543 4.543 9 H 0.073 0.927 10 C -0.178 4.178 11 N -0.554 5.554 12 Si 0.763 3.237 13 H -0.199 1.199 14 H -0.216 1.216 15 H -0.195 1.195 16 C -0.077 4.077 17 C -0.126 4.126 18 C -0.189 4.189 19 C -0.103 4.103 20 N -0.218 5.218 21 C -0.078 4.078 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.135 0.865 32 H 0.173 0.827 33 H 0.195 0.805 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.492 5.068 -2.719 7.953 hybrid contribution 1.178 -1.254 0.241 1.737 sum -4.315 3.814 -2.478 6.269 Atomic orbital electron populations 1.21790 0.94855 1.01582 1.01832 1.21371 0.95755 0.96251 1.00979 1.21108 0.95386 0.95899 0.96811 0.92836 1.21815 1.01115 0.99214 0.97156 1.17906 0.91870 0.87485 0.96889 0.95192 1.21255 1.01275 1.33609 0.98203 0.92687 1.25591 0.97210 0.96274 0.98771 1.70023 1.11142 1.44120 1.30098 0.85872 0.77126 0.79010 0.81642 1.19915 1.21634 1.19510 1.21567 0.95039 0.98141 0.92997 1.21631 0.96447 0.96071 0.98467 1.22329 1.01608 0.93915 1.01021 1.23010 0.94919 1.01050 0.91309 1.67563 1.12050 1.17159 1.24999 1.22417 0.99256 0.88527 0.97623 0.92000 0.92435 0.92879 0.93921 0.93084 0.94407 0.93644 0.91408 0.93200 0.86504 0.82724 0.80518 0.84096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 9.68 71.98 0.70 -3.33 16 2 C -0.11 -3.87 5.26 30.59 0.16 -3.71 16 3 C -0.07 -2.83 1.77 -10.79 -0.02 -2.85 16 4 H 0.05 2.07 7.45 -2.39 -0.02 2.05 16 5 C -0.14 -4.54 8.70 71.98 0.63 -3.91 16 6 C 0.08 3.63 1.61 -12.29 -0.02 3.61 16 7 H 0.03 1.58 7.24 -2.39 -0.02 1.56 16 8 C -0.51 -26.11 6.64 25.60 0.17 -25.94 16 9 H 0.05 2.82 7.82 -2.91 -0.02 2.80 16 10 C 0.02 1.13 5.45 84.66 0.46 1.59 16 11 N -0.91 -51.58 12.88 21.45 0.28 -51.31 16 12 Si 0.94 43.22 29.54 68.60 2.03 45.25 16 13 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 14 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 15 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 16 C -0.08 -3.32 3.47 -19.77 -0.07 -3.39 16 17 C -0.10 -4.12 9.81 22.47 0.22 -3.90 16 18 C -0.17 -5.76 10.11 22.36 0.23 -5.54 16 19 C 0.05 1.84 11.18 84.69 0.95 2.78 16 20 N -0.51 -20.40 10.36 -195.84 -2.03 -22.43 16 21 C 0.08 3.34 10.01 84.67 0.85 4.19 16 22 H 0.06 1.56 6.59 -2.39 -0.02 1.54 16 23 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.05 2.09 7.06 -2.39 -0.02 2.07 16 27 H 0.04 1.30 7.19 -2.39 -0.02 1.28 16 28 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.07 1.91 6.59 -2.38 -0.02 1.89 16 30 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 31 H 0.12 4.88 8.00 -2.91 -0.02 4.86 16 32 H 0.16 4.04 8.06 -2.91 -0.02 4.02 16 33 H 0.18 4.53 8.06 -2.91 -0.02 4.50 16 34 H 0.14 5.95 7.60 -2.91 -0.02 5.93 16 Total: -1.00 -58.56 280.31 5.58 -52.98 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 1.06 Total: 15.90 kcal Atomic # 6 Polarization: -44.65 SS G_CDS: 4.25 Total: -40.40 kcal Atomic # 7 Polarization: -71.98 SS G_CDS: -1.75 Total: -73.73 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -58.56 5.58 -52.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261107791.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.938 kcal (2) G-P(sol) polarization free energy of solvation -58.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds