Wall clock time and date at job start Mon Mar 30 2020 02:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47163 * 2 1 4 4 C 1.50702 * 109.47136 * 119.99705 * 2 1 3 5 5 H 1.08008 * 119.99879 * 119.99675 * 4 2 1 6 6 C 1.37873 * 120.00155 * 300.00211 * 4 2 1 7 7 N 1.31513 * 119.99956 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 120.00049 * 359.97438 * 6 4 2 9 9 H 1.48499 * 109.46860 * 90.00025 * 8 6 4 10 10 H 1.48498 * 109.47141 * 210.00056 * 8 6 4 11 11 H 1.48497 * 109.46791 * 330.00746 * 8 6 4 12 12 C 1.53002 * 109.47132 * 239.99488 * 2 1 3 13 13 C 1.53001 * 109.46626 * 54.79022 * 12 2 1 14 14 C 1.52999 * 109.47341 * 294.78774 * 12 2 1 15 15 C 1.50701 * 109.47195 * 174.78621 * 12 2 1 16 16 C 1.38645 * 120.79247 * 174.19730 * 15 12 2 17 17 C 1.38203 * 119.16527 * 180.02562 * 16 15 12 18 18 N 1.31874 * 120.76117 * 0.26269 * 17 16 15 19 19 C 1.31868 * 121.72526 * 359.46988 * 18 17 16 20 20 C 1.38201 * 120.76576 * 0.52442 * 19 18 17 21 21 H 1.09002 * 109.46810 * 295.14090 * 1 2 3 22 22 H 1.08996 * 109.46986 * 55.14261 * 1 2 3 23 23 H 1.09005 * 109.46868 * 175.14712 * 1 2 3 24 24 H 0.97007 * 119.99770 * 179.97438 * 7 6 4 25 25 H 1.08998 * 109.46740 * 180.02562 * 13 12 2 26 26 H 1.09002 * 109.46831 * 299.99597 * 13 12 2 27 27 H 1.08999 * 109.47632 * 59.99900 * 13 12 2 28 28 H 1.09004 * 109.47046 * 299.99652 * 14 12 2 29 29 H 1.09000 * 109.46801 * 59.99885 * 14 12 2 30 30 H 1.08998 * 109.46935 * 179.97438 * 14 12 2 31 31 H 1.08005 * 120.41772 * 0.02562 * 16 15 12 32 32 H 1.07994 * 119.62030 * 179.97438 * 17 16 15 33 33 H 1.07998 * 119.61564 * 180.27201 * 19 18 17 34 34 H 1.07995 * 120.41910 * 179.72112 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1373 -0.8595 3.5565 8 14 0.6259 1.2799 2.6541 9 1 -0.8020 0.8745 2.6993 10 1 0.9772 1.9954 3.9070 11 1 0.8491 2.1772 1.4922 12 6 2.0400 -0.7214 -1.2492 13 6 1.4258 -0.0797 -2.4950 14 6 1.6399 -2.1967 -1.1853 15 6 3.5415 -0.6106 -1.3155 16 6 4.2605 -1.2837 -2.2912 17 6 5.6366 -1.1587 -2.3205 18 7 6.2653 -0.4144 -1.4318 19 6 5.6137 0.2438 -0.4931 20 6 4.2368 0.1666 -0.4016 21 1 -0.3633 0.4366 0.9303 22 1 -0.3633 0.5873 -0.8433 23 1 -0.3633 -1.0240 -0.0869 24 1 1.9032 -0.5279 4.4376 25 1 1.7888 -0.5939 -3.3849 26 1 0.3398 -0.1599 -2.4470 27 1 1.7109 0.9713 -2.5405 28 1 2.0775 -2.6538 -0.2978 29 1 0.5539 -2.2768 -1.1374 30 1 2.0029 -2.7105 -2.0755 31 1 3.7517 -1.8981 -3.0193 32 1 6.2039 -1.6801 -3.0772 33 1 6.1626 0.8470 0.2148 34 1 3.7092 0.7045 0.3721 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261127366.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:42 Heat of formation + Delta-G solvation = 27.191686 kcal Electronic energy + Delta-G solvation = -15346.624544 eV Core-core repulsion = 13051.313466 eV Total energy + Delta-G solvation = -2295.311078 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.90632 -37.18986 -32.81528 -31.17646 -30.66140 -29.21317 -26.90317 -25.22814 -23.53350 -22.66803 -21.30673 -18.21011 -16.62458 -16.31791 -15.49177 -14.88888 -14.54800 -13.74843 -13.53734 -13.33445 -13.05539 -12.77219 -12.49560 -12.31106 -11.84811 -11.35447 -11.22354 -11.06616 -10.79836 -10.55919 -10.33471 -9.99784 -9.65628 -9.17626 -9.12265 -8.83602 -8.65408 -8.59717 -8.44647 -6.09448 -4.07589 1.76951 1.96373 3.23918 3.35136 3.37181 4.37449 4.45238 4.99967 5.13751 5.27387 5.32265 5.66080 5.71269 5.74719 5.88371 5.96183 6.13080 6.16930 6.27662 6.33409 6.41971 6.47388 6.50795 6.54286 6.63730 6.74895 6.89801 7.03766 7.10958 7.23238 7.37691 7.48705 7.72741 8.49457 8.54495 8.95403 9.52097 11.02913 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.029310 B = 0.011735 C = 0.009758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.078231 B = 2385.520707 C = 2868.829374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.015 3.985 3 H 0.029 0.971 4 C -0.506 4.506 5 H 0.078 0.922 6 C 0.070 3.930 7 N -0.898 5.898 8 Si 0.884 3.116 9 H -0.281 1.281 10 H -0.300 1.300 11 H -0.267 1.267 12 C -0.014 4.014 13 C -0.139 4.139 14 C -0.128 4.128 15 C -0.006 4.006 16 C -0.179 4.179 17 C 0.077 3.923 18 N -0.500 5.500 19 C 0.081 3.919 20 C -0.135 4.135 21 H 0.038 0.962 22 H 0.030 0.970 23 H 0.054 0.946 24 H 0.263 0.737 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.035 0.965 31 H 0.123 0.877 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.100 1.331 -10.390 10.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.003 4.003 3 H 0.046 0.954 4 C -0.544 4.544 5 H 0.096 0.904 6 C -0.132 4.132 7 N -0.536 5.536 8 Si 0.715 3.285 9 H -0.208 1.208 10 H -0.227 1.227 11 H -0.192 1.192 12 C -0.014 4.014 13 C -0.196 4.196 14 C -0.185 4.185 15 C -0.014 4.014 16 C -0.199 4.199 17 C -0.080 4.080 18 N -0.210 5.210 19 C -0.075 4.075 20 C -0.154 4.154 21 H 0.057 0.943 22 H 0.049 0.951 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.141 0.859 32 H 0.160 0.840 33 H 0.165 0.835 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.018 1.389 -10.222 10.366 hybrid contribution -1.592 0.631 0.414 1.762 sum -0.574 2.020 -9.807 10.030 Atomic orbital electron populations 1.22279 0.99292 1.00621 0.98632 1.19275 0.91727 0.96099 0.93240 0.95353 1.21042 1.31529 1.13525 0.88258 0.90369 1.25008 0.95676 0.96510 0.95982 1.69898 1.45555 1.40213 0.97927 0.86914 0.80763 0.84027 0.76829 1.20816 1.22744 1.19179 1.19478 0.89086 0.96786 0.96082 1.21957 1.00850 1.00158 0.96654 1.21840 1.01129 0.94371 1.01119 1.20285 0.96258 0.92557 0.92264 1.21916 0.95356 1.02097 1.00537 1.22463 0.91858 0.96691 0.96965 1.67542 1.41369 1.07969 1.04139 1.22697 0.92269 0.96995 0.95541 1.22574 0.94895 0.99043 0.98906 0.94319 0.95080 0.92742 0.92712 0.93539 0.92092 0.93209 0.91026 0.92617 0.94610 0.85894 0.83982 0.83547 0.82654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 7.89 37.16 0.29 -2.78 16 2 C 0.02 0.33 0.79 -91.77 -0.07 0.26 16 3 H 0.03 0.63 6.00 -51.93 -0.31 0.32 16 4 C -0.51 -12.91 6.13 -34.44 -0.21 -13.13 16 5 H 0.08 2.21 6.45 -52.48 -0.34 1.87 16 6 C 0.07 1.90 5.45 -17.82 -0.10 1.80 16 7 N -0.90 -26.40 13.96 55.43 0.77 -25.63 16 8 Si 0.88 21.17 24.41 -169.99 -4.15 17.02 16 9 H -0.28 -6.66 6.83 56.52 0.39 -6.28 16 10 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.27 -6.09 6.53 56.52 0.37 -5.72 16 12 C -0.01 -0.26 0.41 -155.66 -0.06 -0.33 16 13 C -0.14 -2.15 7.86 37.16 0.29 -1.86 16 14 C -0.13 -2.27 7.67 37.16 0.28 -1.98 16 15 C -0.01 -0.10 4.44 -104.32 -0.46 -0.57 16 16 C -0.18 -2.94 8.90 -39.44 -0.35 -3.29 16 17 C 0.08 1.26 11.18 -17.55 -0.20 1.06 16 18 N -0.50 -9.14 10.36 -13.26 -0.14 -9.28 16 19 C 0.08 1.49 11.18 -17.55 -0.20 1.29 16 20 C -0.13 -2.66 8.34 -39.44 -0.33 -2.99 16 21 H 0.04 0.84 3.22 -51.93 -0.17 0.68 16 22 H 0.03 0.54 6.64 -51.93 -0.34 0.20 16 23 H 0.05 1.06 6.36 -51.93 -0.33 0.73 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.05 0.63 7.86 -51.93 -0.41 0.23 16 26 H 0.06 0.89 6.45 -51.93 -0.34 0.56 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 1.47 6.31 -51.93 -0.33 1.14 16 29 H 0.05 0.95 6.47 -51.93 -0.34 0.61 16 30 H 0.03 0.54 7.18 -51.93 -0.37 0.17 16 31 H 0.12 1.72 7.29 -52.48 -0.38 1.34 16 32 H 0.14 1.84 8.06 -52.49 -0.42 1.42 16 33 H 0.15 2.36 8.06 -52.49 -0.42 1.94 16 34 H 0.16 3.33 5.27 -52.49 -0.28 3.05 16 LS Contribution 257.50 15.07 3.88 3.88 Total: -1.00 -28.69 257.50 -5.13 -33.81 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -4.38 Total: 2.71 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -1.11 Total: -22.51 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.64 Total: -34.91 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.15 Total: 17.02 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.69 -5.13 -33.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261127366.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.005 kcal (2) G-P(sol) polarization free energy of solvation -28.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds