Wall clock time and date at job start Mon Mar 30 2020 02:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47163 * 2 1 4 4 C 1.50702 * 109.47136 * 119.99705 * 2 1 3 5 5 H 1.08008 * 119.99879 * 119.99675 * 4 2 1 6 6 C 1.37873 * 120.00155 * 300.00211 * 4 2 1 7 7 N 1.31513 * 119.99956 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 120.00049 * 359.97438 * 6 4 2 9 9 H 1.48499 * 109.46860 * 90.00025 * 8 6 4 10 10 H 1.48498 * 109.47141 * 210.00056 * 8 6 4 11 11 H 1.48497 * 109.46791 * 330.00746 * 8 6 4 12 12 C 1.53002 * 109.47132 * 239.99488 * 2 1 3 13 13 C 1.53001 * 109.46626 * 54.79022 * 12 2 1 14 14 C 1.52999 * 109.47341 * 294.78774 * 12 2 1 15 15 C 1.50701 * 109.47195 * 174.78621 * 12 2 1 16 16 C 1.38645 * 120.79247 * 174.19730 * 15 12 2 17 17 C 1.38203 * 119.16527 * 180.02562 * 16 15 12 18 18 N 1.31874 * 120.76117 * 0.26269 * 17 16 15 19 19 C 1.31868 * 121.72526 * 359.46988 * 18 17 16 20 20 C 1.38201 * 120.76576 * 0.52442 * 19 18 17 21 21 H 1.09002 * 109.46810 * 295.14090 * 1 2 3 22 22 H 1.08996 * 109.46986 * 55.14261 * 1 2 3 23 23 H 1.09005 * 109.46868 * 175.14712 * 1 2 3 24 24 H 0.97007 * 119.99770 * 179.97438 * 7 6 4 25 25 H 1.08998 * 109.46740 * 180.02562 * 13 12 2 26 26 H 1.09002 * 109.46831 * 299.99597 * 13 12 2 27 27 H 1.08999 * 109.47632 * 59.99900 * 13 12 2 28 28 H 1.09004 * 109.47046 * 299.99652 * 14 12 2 29 29 H 1.09000 * 109.46801 * 59.99885 * 14 12 2 30 30 H 1.08998 * 109.46935 * 179.97438 * 14 12 2 31 31 H 1.08005 * 120.41772 * 0.02562 * 16 15 12 32 32 H 1.07994 * 119.62030 * 179.97438 * 17 16 15 33 33 H 1.07998 * 119.61564 * 180.27201 * 19 18 17 34 34 H 1.07995 * 120.41910 * 179.72112 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1373 -0.8595 3.5565 8 14 0.6259 1.2799 2.6541 9 1 -0.8020 0.8745 2.6993 10 1 0.9772 1.9954 3.9070 11 1 0.8491 2.1772 1.4922 12 6 2.0400 -0.7214 -1.2492 13 6 1.4258 -0.0797 -2.4950 14 6 1.6399 -2.1967 -1.1853 15 6 3.5415 -0.6106 -1.3155 16 6 4.2605 -1.2837 -2.2912 17 6 5.6366 -1.1587 -2.3205 18 7 6.2653 -0.4144 -1.4318 19 6 5.6137 0.2438 -0.4931 20 6 4.2368 0.1666 -0.4016 21 1 -0.3633 0.4366 0.9303 22 1 -0.3633 0.5873 -0.8433 23 1 -0.3633 -1.0240 -0.0869 24 1 1.9032 -0.5279 4.4376 25 1 1.7888 -0.5939 -3.3849 26 1 0.3398 -0.1599 -2.4470 27 1 1.7109 0.9713 -2.5405 28 1 2.0775 -2.6538 -0.2978 29 1 0.5539 -2.2768 -1.1374 30 1 2.0029 -2.7105 -2.0755 31 1 3.7517 -1.8981 -3.0193 32 1 6.2039 -1.6801 -3.0772 33 1 6.1626 0.8470 0.2148 34 1 3.7092 0.7045 0.3721 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261127366.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:42 Heat of formation + Delta-G solvation = 9.568747 kcal Electronic energy + Delta-G solvation = -15347.388732 eV Core-core repulsion = 13051.313466 eV Total energy + Delta-G solvation = -2296.075266 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.31611 -38.69242 -34.70782 -32.80746 -32.06448 -30.74341 -28.30048 -26.93836 -25.12609 -24.07080 -22.87630 -19.76267 -18.57233 -17.81035 -16.92419 -16.54869 -16.05912 -15.31096 -15.13853 -14.76485 -14.51963 -14.33794 -14.13720 -13.78900 -13.46622 -12.86128 -12.72478 -12.47212 -12.45581 -12.13416 -11.97370 -11.59750 -11.45742 -10.89891 -10.81513 -10.65611 -10.22657 -10.11927 -9.87306 -8.20486 -6.19604 0.39926 0.55857 1.31774 1.37896 1.46751 2.36761 3.06075 3.16015 3.71642 3.82111 3.93096 4.31779 4.37487 4.41138 4.45986 4.57141 4.70972 4.77508 4.93525 4.94771 4.97041 5.00478 5.11947 5.15034 5.19245 5.28172 5.41209 5.49131 5.58964 5.71434 5.81414 5.86981 6.02155 6.43562 6.86083 7.17314 7.42574 8.95708 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.029310 B = 0.011735 C = 0.009758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.078231 B = 2385.520707 C = 2868.829374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.013 3.987 3 H 0.021 0.979 4 C -0.481 4.481 5 H 0.040 0.960 6 C 0.010 3.990 7 N -0.952 5.952 8 Si 0.940 3.060 9 H -0.274 1.274 10 H -0.310 1.310 11 H -0.248 1.248 12 C -0.014 4.014 13 C -0.133 4.133 14 C -0.123 4.123 15 C -0.019 4.019 16 C -0.174 4.174 17 C 0.080 3.920 18 N -0.516 5.516 19 C 0.073 3.927 20 C -0.163 4.163 21 H 0.022 0.978 22 H 0.065 0.935 23 H 0.058 0.942 24 H 0.260 0.740 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.032 0.968 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.157 0.843 32 H 0.182 0.818 33 H 0.158 0.842 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.672 1.522 -13.469 13.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.006 4.006 3 H 0.039 0.961 4 C -0.519 4.519 5 H 0.058 0.942 6 C -0.186 4.186 7 N -0.594 5.594 8 Si 0.769 3.231 9 H -0.200 1.200 10 H -0.238 1.238 11 H -0.171 1.171 12 C -0.015 4.015 13 C -0.191 4.191 14 C -0.180 4.180 15 C -0.027 4.027 16 C -0.193 4.193 17 C -0.077 4.077 18 N -0.226 5.226 19 C -0.082 4.082 20 C -0.182 4.182 21 H 0.041 0.959 22 H 0.084 0.916 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.051 0.949 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.174 0.826 32 H 0.198 0.802 33 H 0.175 0.825 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.237 1.591 -13.332 13.429 hybrid contribution -1.255 0.481 1.291 1.864 sum -1.018 2.072 -12.041 12.260 Atomic orbital electron populations 1.22234 0.97796 1.01537 0.99238 1.19253 0.92866 0.95464 0.92996 0.96061 1.21218 1.29176 1.11638 0.89889 0.94227 1.25750 0.97492 0.99449 0.95860 1.70054 1.48364 1.42568 0.98422 0.85994 0.79305 0.81011 0.76825 1.20029 1.23820 1.17141 1.19473 0.89138 0.96859 0.95984 1.21914 1.01397 1.00073 0.95668 1.21781 1.01429 0.94050 1.00725 1.20487 0.96709 0.92776 0.92737 1.22212 0.95467 1.01461 1.00192 1.23148 0.92384 0.95483 0.96704 1.67619 1.41697 1.08659 1.04635 1.22856 0.91940 0.97352 0.96095 1.22439 0.95655 1.00645 0.99509 0.95940 0.91609 0.92274 0.93110 0.91016 0.90881 0.93284 0.94924 0.91844 0.91475 0.82585 0.80151 0.82511 0.85362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.77 7.89 71.98 0.57 -5.20 16 2 C 0.01 0.54 0.79 -11.54 -0.01 0.53 16 3 H 0.02 0.94 6.00 -2.39 -0.01 0.92 16 4 C -0.48 -25.23 6.13 25.60 0.16 -25.07 16 5 H 0.04 2.35 6.45 -2.91 -0.02 2.33 16 6 C 0.01 0.58 5.45 84.65 0.46 1.05 16 7 N -0.95 -58.59 13.96 21.45 0.30 -58.30 16 8 Si 0.94 44.25 24.41 68.60 1.67 45.92 16 9 H -0.27 -12.45 6.83 99.48 0.68 -11.77 16 10 H -0.31 -14.95 7.11 99.48 0.71 -14.24 16 11 H -0.25 -10.73 6.53 99.48 0.65 -10.08 16 12 C -0.01 -0.50 0.41 -52.93 -0.02 -0.52 16 13 C -0.13 -3.56 7.86 71.98 0.57 -3.00 16 14 C -0.12 -4.11 7.67 71.98 0.55 -3.56 16 15 C -0.02 -0.68 4.44 -19.67 -0.09 -0.77 16 16 C -0.17 -5.14 8.90 22.36 0.20 -4.94 16 17 C 0.08 2.35 11.18 84.68 0.95 3.29 16 18 N -0.52 -18.10 10.36 -195.85 -2.03 -20.13 16 19 C 0.07 2.69 11.18 84.68 0.95 3.64 16 20 C -0.16 -6.51 8.34 22.36 0.19 -6.33 16 21 H 0.02 0.92 3.22 -2.39 -0.01 0.91 16 22 H 0.07 2.05 6.64 -2.39 -0.02 2.04 16 23 H 0.06 2.17 6.36 -2.38 -0.02 2.16 16 24 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 25 H 0.07 1.57 7.86 -2.39 -0.02 1.55 16 26 H 0.07 1.78 6.45 -2.39 -0.02 1.76 16 27 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.03 1.33 6.31 -2.39 -0.02 1.31 16 29 H 0.06 2.00 6.47 -2.39 -0.02 1.98 16 30 H 0.07 1.80 7.18 -2.39 -0.02 1.78 16 31 H 0.16 3.53 7.29 -2.91 -0.02 3.51 16 32 H 0.18 3.84 8.06 -2.91 -0.02 3.82 16 33 H 0.16 5.19 8.06 -2.91 -0.02 5.16 16 34 H 0.13 5.75 5.27 -2.91 -0.02 5.73 16 Total: -1.00 -64.13 257.50 5.42 -58.71 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 1.01 Total: 14.67 kcal Atomic # 6 Polarization: -45.33 SS G_CDS: 4.46 Total: -40.87 kcal Atomic # 7 Polarization: -76.70 SS G_CDS: -1.73 Total: -78.43 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.67 Total: 45.92 kcal Total: -64.13 5.42 -58.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261127366.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.278 kcal (2) G-P(sol) polarization free energy of solvation -64.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds