Wall clock time and date at job start Mon Mar 30 2020 02:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46971 * 2 1 4 4 C 1.50693 * 109.47137 * 239.99976 * 2 1 3 5 5 H 1.08002 * 120.00328 * 244.85584 * 4 2 1 6 6 C 1.37876 * 120.00135 * 64.86127 * 4 2 1 7 7 N 1.31515 * 120.00177 * 9.36290 * 6 4 2 8 8 Si 1.86809 * 120.00288 * 189.36582 * 6 4 2 9 9 H 1.48496 * 109.46883 * 269.99923 * 8 6 4 10 10 H 1.48497 * 109.46916 * 29.99612 * 8 6 4 11 11 H 1.48497 * 109.47058 * 149.99930 * 8 6 4 12 12 C 1.52997 * 109.47013 * 120.00121 * 2 1 3 13 13 C 1.52999 * 109.47149 * 304.61657 * 12 2 1 14 14 C 1.52996 * 109.47305 * 64.61872 * 12 2 1 15 15 C 1.50704 * 109.47213 * 184.62077 * 12 2 1 16 16 C 1.38657 * 120.78716 * 5.65997 * 15 12 2 17 17 C 1.38200 * 119.16049 * 179.79946 * 16 15 12 18 18 N 1.31872 * 120.76313 * 0.48928 * 17 16 15 19 19 C 1.31874 * 121.72716 * 359.73820 * 18 17 16 20 20 C 1.38203 * 120.76192 * 0.02562 * 19 18 17 21 21 H 1.08999 * 109.46817 * 184.99630 * 1 2 3 22 22 H 1.08994 * 109.47055 * 304.99635 * 1 2 3 23 23 H 1.08999 * 109.47023 * 64.99988 * 1 2 3 24 24 H 0.97000 * 119.99768 * 356.79403 * 7 6 4 25 25 H 1.09000 * 109.47293 * 60.00382 * 13 12 2 26 26 H 1.09005 * 109.47525 * 180.02562 * 13 12 2 27 27 H 1.08997 * 109.47622 * 300.00335 * 13 12 2 28 28 H 1.09001 * 109.47006 * 60.00235 * 14 12 2 29 29 H 1.09010 * 109.46840 * 179.97438 * 14 12 2 30 30 H 1.09000 * 109.47082 * 299.99584 * 14 12 2 31 31 H 1.07997 * 120.41396 * 0.02562 * 16 15 12 32 32 H 1.08003 * 119.61962 * 180.20228 * 17 16 15 33 33 H 1.08001 * 119.61327 * 180.02562 * 19 18 17 34 34 H 1.08001 * 120.41602 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5870 -1.6320 -1.1333 6 6 1.7839 -0.1838 -2.4802 7 7 1.2741 1.0230 -2.5959 8 14 2.1713 -1.1845 -4.0093 9 1 3.5644 -0.9072 -4.4425 10 1 2.0263 -2.6306 -3.7044 11 1 1.2313 -0.8111 -5.0966 12 6 2.0400 -0.7213 1.2492 13 6 1.4374 -0.0702 2.4958 14 6 1.6271 -2.1934 1.1925 15 6 3.5427 -0.6229 1.3078 16 6 4.2403 0.1433 0.3865 17 6 5.6177 0.2130 0.4740 18 7 6.2681 -0.4457 1.4132 19 6 5.6381 -1.1875 2.3030 20 6 4.2609 -1.3011 2.2807 21 1 -0.3633 -1.0238 0.0895 22 1 -0.3633 0.5894 0.8418 23 1 -0.3633 0.4343 -0.9314 24 1 1.0296 1.5243 -1.8023 25 1 0.3505 -0.1413 2.4535 26 1 1.8010 -0.5837 3.3858 27 1 1.7315 0.9786 2.5362 28 1 2.0564 -2.6572 0.3045 29 1 1.9908 -2.7073 2.0824 30 1 0.5402 -2.2645 1.1502 31 1 3.7134 0.6816 -0.3875 32 1 6.1682 0.8103 -0.2378 33 1 6.2049 -1.7122 3.0578 34 1 3.7505 -1.9098 3.0124 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261127367.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:43 Heat of formation + Delta-G solvation = 15.240120 kcal Electronic energy + Delta-G solvation = -15349.808182 eV Core-core repulsion = 13053.978845 eV Total energy + Delta-G solvation = -2295.829337 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.90087 -37.16937 -33.15230 -30.87080 -30.63105 -28.39982 -26.91707 -25.09677 -23.48089 -22.63168 -21.29612 -18.50872 -16.84700 -15.89706 -15.49919 -14.73117 -14.15977 -13.78577 -13.47964 -13.36624 -13.25851 -12.93544 -12.41532 -11.51770 -11.42556 -11.29708 -11.18024 -10.90491 -10.74151 -10.54184 -10.43088 -10.13865 -9.94047 -9.26506 -8.87213 -8.83656 -8.55149 -8.41161 -8.18975 -6.34905 -4.05059 1.75039 1.95462 3.41950 3.45134 3.60021 4.43698 4.50899 4.97703 5.19286 5.33837 5.37800 5.68107 5.70601 5.78708 5.90477 5.97361 6.14627 6.24355 6.29623 6.38044 6.46294 6.55681 6.60303 6.65576 6.73793 6.86708 6.99733 7.04765 7.24227 7.38476 7.42096 7.65217 8.21981 8.44889 8.52446 8.86728 9.62391 11.01579 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.025432 B = 0.012121 C = 0.009605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.706986 B = 2309.500832 C = 2914.595454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.039 3.961 3 H 0.021 0.979 4 C -0.586 4.586 5 H 0.052 0.948 6 C 0.022 3.978 7 N -0.911 5.911 8 Si 1.060 2.940 9 H -0.289 1.289 10 H -0.290 1.290 11 H -0.286 1.286 12 C -0.018 4.018 13 C -0.137 4.137 14 C -0.126 4.126 15 C -0.005 4.005 16 C -0.134 4.134 17 C 0.078 3.922 18 N -0.501 5.501 19 C 0.076 3.924 20 C -0.181 4.181 21 H 0.039 0.961 22 H 0.019 0.981 23 H 0.055 0.945 24 H 0.272 0.728 25 H 0.060 0.940 26 H 0.043 0.957 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.033 0.967 30 H 0.054 0.946 31 H 0.159 0.841 32 H 0.147 0.853 33 H 0.143 0.857 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.233 -3.219 7.964 8.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.020 3.980 3 H 0.039 0.961 4 C -0.624 4.624 5 H 0.070 0.930 6 C -0.182 4.182 7 N -0.548 5.548 8 Si 0.889 3.111 9 H -0.216 1.216 10 H -0.216 1.216 11 H -0.211 1.211 12 C -0.018 4.018 13 C -0.195 4.195 14 C -0.183 4.183 15 C -0.013 4.013 16 C -0.153 4.153 17 C -0.078 4.078 18 N -0.210 5.210 19 C -0.081 4.081 20 C -0.201 4.201 21 H 0.058 0.942 22 H 0.038 0.962 23 H 0.074 0.926 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.176 0.824 32 H 0.164 0.836 33 H 0.160 0.840 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.128 -3.108 6.330 7.715 hybrid contribution -0.933 -0.231 1.576 1.846 sum 2.196 -3.340 7.907 8.859 Atomic orbital electron populations 1.22006 0.99269 0.99394 0.99499 1.18890 0.91867 0.95432 0.91786 0.96090 1.21945 1.38034 1.10855 0.91535 0.92999 1.25629 0.94970 0.96532 1.01066 1.70778 1.40652 1.09598 1.33727 0.83664 0.76564 0.75090 0.75783 1.21571 1.21583 1.21129 1.19561 0.88938 0.96644 0.96694 1.21937 1.00875 1.00065 0.96578 1.21826 1.01020 0.94715 1.00711 1.20334 0.96422 0.92408 0.92113 1.22641 0.94753 0.98914 0.99024 1.22713 0.92346 0.97087 0.95675 1.67541 1.41421 1.07951 1.04130 1.22456 0.91837 0.96818 0.97002 1.21932 0.95352 1.02187 1.00589 0.94164 0.96213 0.92626 0.91686 0.92150 0.93806 0.93319 0.91488 0.94783 0.92662 0.82373 0.83583 0.84008 0.85990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.09 37.16 0.30 -2.83 16 2 C 0.04 0.87 0.81 -91.78 -0.07 0.79 16 3 H 0.02 0.52 6.37 -51.93 -0.33 0.19 16 4 C -0.59 -14.73 5.46 -34.44 -0.19 -14.92 16 5 H 0.05 1.35 6.17 -52.49 -0.32 1.02 16 6 C 0.02 0.60 5.16 -17.82 -0.09 0.51 16 7 N -0.91 -25.68 13.02 55.43 0.72 -24.96 16 8 Si 1.06 24.42 29.91 -169.99 -5.09 19.33 16 9 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 C -0.02 -0.35 0.41 -155.66 -0.06 -0.41 16 13 C -0.14 -2.28 7.88 37.16 0.29 -1.99 16 14 C -0.13 -2.29 7.66 37.16 0.28 -2.00 16 15 C 0.00 -0.09 4.48 -104.32 -0.47 -0.56 16 16 C -0.13 -2.72 8.34 -39.44 -0.33 -3.05 16 17 C 0.08 1.45 11.18 -17.55 -0.20 1.25 16 18 N -0.50 -9.22 10.36 -13.25 -0.14 -9.36 16 19 C 0.08 1.25 11.18 -17.55 -0.20 1.06 16 20 C -0.18 -3.04 8.90 -39.44 -0.35 -3.39 16 21 H 0.04 0.84 6.33 -51.93 -0.33 0.51 16 22 H 0.02 0.37 6.65 -51.93 -0.35 0.03 16 23 H 0.05 1.34 6.31 -51.93 -0.33 1.01 16 24 H 0.27 7.59 6.04 -40.82 -0.25 7.35 16 25 H 0.06 0.97 6.46 -51.93 -0.34 0.63 16 26 H 0.04 0.64 7.87 -51.93 -0.41 0.23 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 1.36 6.26 -51.93 -0.33 1.03 16 29 H 0.03 0.53 7.17 -51.92 -0.37 0.16 16 30 H 0.05 0.98 6.45 -51.93 -0.33 0.64 16 31 H 0.16 3.59 5.26 -52.49 -0.28 3.31 16 32 H 0.15 2.40 8.06 -52.48 -0.42 1.97 16 33 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 34 H 0.12 1.77 7.29 -52.49 -0.38 1.38 16 LS Contribution 263.07 15.07 3.96 3.96 Total: -1.00 -27.65 263.07 -6.02 -33.67 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -4.40 Total: 2.89 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: -1.08 Total: -25.54 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.58 Total: -34.31 kcal Atomic # 14 Polarization: 24.42 SS G_CDS: -5.09 Total: 19.33 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -27.65 -6.02 -33.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261127367.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.905 kcal (2) G-P(sol) polarization free energy of solvation -27.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds