Wall clock time and date at job start Mon Mar 30 2020 02:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47144 * 2 1 4 4 C 1.50705 * 109.46678 * 240.00536 * 2 1 3 5 5 H 1.08003 * 119.99605 * 244.39007 * 4 2 1 6 6 C 1.37871 * 120.00114 * 64.39421 * 4 2 1 7 7 N 1.31523 * 119.99830 * 194.97451 * 6 4 2 8 8 Si 1.86801 * 120.00113 * 14.96836 * 6 4 2 9 9 H 1.48500 * 109.46889 * 95.42158 * 8 6 4 10 10 H 1.48500 * 109.47167 * 215.41880 * 8 6 4 11 11 H 1.48498 * 109.47194 * 335.42205 * 8 6 4 12 12 C 1.53002 * 109.47289 * 120.00572 * 2 1 3 13 13 C 1.52993 * 109.46887 * 305.42900 * 12 2 1 14 14 C 1.53002 * 109.47152 * 65.43082 * 12 2 1 15 15 C 1.50698 * 109.47107 * 185.42759 * 12 2 1 16 16 C 1.38667 * 120.41939 * 184.73173 * 15 12 2 17 17 C 1.38629 * 118.42006 * 180.02562 * 16 15 12 18 18 C 1.38222 * 119.16450 * 0.02562 * 17 16 15 19 19 N 1.31859 * 120.76091 * 359.97438 * 18 17 16 20 20 C 1.31887 * 121.72603 * 359.70743 * 19 18 17 21 21 H 1.08999 * 109.47001 * 303.59489 * 1 2 3 22 22 H 1.09000 * 109.47604 * 63.59531 * 1 2 3 23 23 H 1.08998 * 109.47367 * 183.59785 * 1 2 3 24 24 H 0.97003 * 119.99559 * 180.02562 * 7 6 4 25 25 H 1.09001 * 109.47274 * 59.99881 * 13 12 2 26 26 H 1.09006 * 109.47132 * 179.97438 * 13 12 2 27 27 H 1.09005 * 109.47408 * 299.99883 * 13 12 2 28 28 H 1.09001 * 109.47251 * 54.81194 * 14 12 2 29 29 H 1.08993 * 109.46805 * 174.81845 * 14 12 2 30 30 H 1.09010 * 109.46869 * 294.81681 * 14 12 2 31 31 H 1.08004 * 120.79056 * 359.97438 * 16 15 12 32 32 H 1.07997 * 120.41921 * 180.02562 * 17 16 15 33 33 H 1.07998 * 119.62341 * 179.97438 * 18 17 16 34 34 H 1.07995 * 119.61503 * 180.30698 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.5934 -1.6280 -1.1331 6 6 1.7755 -0.1887 -2.4807 7 7 1.9445 -0.9336 -3.5515 8 14 1.1873 1.5758 -2.6538 9 1 2.3492 2.4607 -2.9225 10 1 0.2238 1.6683 -3.7800 11 1 0.5214 2.0012 -1.3965 12 6 2.0400 -0.7214 1.2492 13 6 1.4217 -0.0834 2.4947 14 6 1.6446 -2.1979 1.1827 15 6 3.5410 -0.6060 1.3182 16 6 4.2508 -1.2640 2.3112 17 6 5.6303 -1.1287 2.3361 18 6 6.2479 -0.3477 1.3775 19 7 5.5407 0.2637 0.4475 20 6 4.2278 0.1526 0.3896 21 1 -0.3633 0.5686 0.8560 22 1 -0.3634 0.4570 -0.9204 23 1 -0.3634 -1.0256 0.0645 24 1 1.7642 -0.5664 -4.4310 25 1 0.3360 -0.1668 2.4447 26 1 1.7847 -0.5976 3.3846 27 1 1.7034 0.9686 2.5421 28 1 2.0073 -2.6295 0.2498 29 1 2.0857 -2.7304 2.0252 30 1 0.5589 -2.2855 1.2256 31 1 3.7410 -1.8668 3.0482 32 1 6.2150 -1.6273 3.0950 33 1 7.3221 -0.2368 1.3901 34 1 3.6828 0.6643 -0.3898 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261133628.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:40 Heat of formation + Delta-G solvation = 26.190118 kcal Electronic energy + Delta-G solvation = -15360.956004 eV Core-core repulsion = 13065.601495 eV Total energy + Delta-G solvation = -2295.354509 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.92697 -37.04665 -32.82493 -31.58858 -30.34283 -29.07011 -26.86490 -25.16555 -23.51547 -22.66247 -21.15608 -18.05690 -16.72932 -16.60415 -15.50204 -15.02183 -14.14618 -13.73152 -13.46027 -13.27746 -12.82160 -12.53675 -12.40082 -12.28301 -11.96965 -11.45822 -11.22443 -10.91645 -10.81665 -10.49991 -10.35605 -9.94198 -9.64169 -9.29564 -9.16615 -9.00167 -8.66481 -8.37130 -8.21079 -6.08732 -4.02267 1.78265 1.88619 3.29543 3.39636 3.42699 4.43623 4.46552 5.03927 5.21213 5.26396 5.43956 5.53049 5.59815 5.75505 5.87108 5.90033 6.16904 6.20098 6.26979 6.38694 6.53730 6.55458 6.56175 6.60910 6.69467 6.80493 6.87380 7.10297 7.12551 7.24063 7.41129 7.54881 7.79545 8.52556 8.66821 8.99966 9.56322 11.03758 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.027805 B = 0.012179 C = 0.010093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.762735 B = 2298.440185 C = 2773.508189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.018 3.982 3 H 0.024 0.976 4 C -0.515 4.515 5 H 0.078 0.922 6 C 0.077 3.923 7 N -0.890 5.890 8 Si 0.855 3.145 9 H -0.280 1.280 10 H -0.289 1.289 11 H -0.252 1.252 12 C -0.009 4.009 13 C -0.139 4.139 14 C -0.129 4.129 15 C -0.096 4.096 16 C -0.085 4.085 17 C -0.189 4.189 18 C 0.076 3.924 19 N -0.493 5.493 20 C 0.126 3.874 21 H 0.025 0.975 22 H 0.043 0.957 23 H 0.049 0.951 24 H 0.262 0.738 25 H 0.060 0.940 26 H 0.043 0.957 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.033 0.967 30 H 0.053 0.947 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.143 0.857 34 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.547 0.671 11.572 11.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.000 4.000 3 H 0.042 0.958 4 C -0.552 4.552 5 H 0.096 0.904 6 C -0.125 4.125 7 N -0.527 5.527 8 Si 0.682 3.318 9 H -0.206 1.206 10 H -0.215 1.215 11 H -0.176 1.176 12 C -0.010 4.010 13 C -0.196 4.196 14 C -0.186 4.186 15 C -0.098 4.098 16 C -0.111 4.111 17 C -0.209 4.209 18 C -0.081 4.081 19 N -0.202 5.202 20 C -0.030 4.030 21 H 0.044 0.956 22 H 0.062 0.938 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.160 0.840 34 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.972 1.172 10.746 10.988 hybrid contribution -0.670 0.277 0.309 0.788 sum 1.302 1.449 11.054 11.225 Atomic orbital electron populations 1.22247 0.98776 1.00162 0.98879 1.19195 0.92314 0.95511 0.93026 0.95815 1.21001 1.35388 1.10395 0.88440 0.90449 1.24950 0.94578 0.97051 0.95944 1.69978 1.48783 1.35535 0.98414 0.87310 0.79103 0.86933 0.78454 1.20595 1.21491 1.17601 1.19394 0.88843 0.96679 0.96046 1.21971 1.00848 1.00104 0.96682 1.21881 1.00644 0.94448 1.01645 1.20889 0.97269 0.96745 0.94912 1.21373 0.93836 0.97993 0.97941 1.21917 0.95376 1.02291 1.01297 1.22610 0.99748 0.94339 0.91404 1.67804 1.08827 1.21027 1.22509 1.23440 0.88876 0.94525 0.96133 0.95609 0.93781 0.93247 0.92767 0.92093 0.93772 0.93280 0.90699 0.94829 0.92842 0.85873 0.86010 0.84002 0.80612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 7.69 37.16 0.29 -2.65 16 2 C 0.02 0.40 0.74 -91.77 -0.07 0.33 16 3 H 0.02 0.53 5.59 -51.93 -0.29 0.24 16 4 C -0.51 -13.29 5.89 -34.44 -0.20 -13.49 16 5 H 0.08 2.21 6.37 -52.48 -0.33 1.87 16 6 C 0.08 2.12 5.34 -17.82 -0.10 2.03 16 7 N -0.89 -26.40 13.96 55.43 0.77 -25.63 16 8 Si 0.86 20.60 25.76 -169.99 -4.38 16.22 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.25 -5.67 5.45 56.52 0.31 -5.36 16 12 C -0.01 -0.16 0.41 -155.66 -0.06 -0.23 16 13 C -0.14 -2.18 7.84 37.15 0.29 -1.89 16 14 C -0.13 -2.33 7.74 37.16 0.29 -2.04 16 15 C -0.10 -1.83 4.51 -104.48 -0.47 -2.30 16 16 C -0.09 -1.39 8.84 -39.28 -0.35 -1.74 16 17 C -0.19 -2.84 10.11 -39.44 -0.40 -3.24 16 18 C 0.08 1.26 11.18 -17.55 -0.20 1.07 16 19 N -0.49 -10.04 10.36 -13.25 -0.14 -10.17 16 20 C 0.13 2.68 9.45 -17.55 -0.17 2.51 16 21 H 0.02 0.45 6.56 -51.93 -0.34 0.11 16 22 H 0.04 0.95 4.91 -51.93 -0.25 0.70 16 23 H 0.05 0.98 6.53 -51.93 -0.34 0.64 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.06 0.91 6.42 -51.93 -0.33 0.57 16 26 H 0.04 0.61 7.75 -51.93 -0.40 0.20 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.07 1.57 6.04 -51.93 -0.31 1.26 16 29 H 0.03 0.52 7.02 -51.93 -0.36 0.15 16 30 H 0.05 0.91 6.76 -51.92 -0.35 0.56 16 31 H 0.12 1.71 7.22 -52.48 -0.38 1.33 16 32 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 33 H 0.14 1.90 8.06 -52.49 -0.42 1.47 16 34 H 0.18 4.09 5.07 -52.49 -0.27 3.82 16 LS Contribution 258.29 15.07 3.89 3.89 Total: -1.00 -28.95 258.29 -5.46 -34.41 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -4.47 Total: 2.93 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: -1.14 Total: -21.64 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 0.64 Total: -35.80 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.38 Total: 16.22 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.95 -5.46 -34.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261133628.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.599 kcal (2) G-P(sol) polarization free energy of solvation -28.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds