Wall clock time and date at job start Mon Mar 30 2020 02:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47144 * 2 1 4 4 C 1.50705 * 109.46678 * 240.00536 * 2 1 3 5 5 H 1.08003 * 119.99605 * 244.39007 * 4 2 1 6 6 C 1.37871 * 120.00114 * 64.39421 * 4 2 1 7 7 N 1.31523 * 119.99830 * 194.97451 * 6 4 2 8 8 Si 1.86801 * 120.00113 * 14.96836 * 6 4 2 9 9 H 1.48500 * 109.46889 * 95.42158 * 8 6 4 10 10 H 1.48500 * 109.47167 * 215.41880 * 8 6 4 11 11 H 1.48498 * 109.47194 * 335.42205 * 8 6 4 12 12 C 1.53002 * 109.47289 * 120.00572 * 2 1 3 13 13 C 1.52993 * 109.46887 * 305.42900 * 12 2 1 14 14 C 1.53002 * 109.47152 * 65.43082 * 12 2 1 15 15 C 1.50698 * 109.47107 * 185.42759 * 12 2 1 16 16 C 1.38667 * 120.41939 * 184.73173 * 15 12 2 17 17 C 1.38629 * 118.42006 * 180.02562 * 16 15 12 18 18 C 1.38222 * 119.16450 * 0.02562 * 17 16 15 19 19 N 1.31859 * 120.76091 * 359.97438 * 18 17 16 20 20 C 1.31887 * 121.72603 * 359.70743 * 19 18 17 21 21 H 1.08999 * 109.47001 * 303.59489 * 1 2 3 22 22 H 1.09000 * 109.47604 * 63.59531 * 1 2 3 23 23 H 1.08998 * 109.47367 * 183.59785 * 1 2 3 24 24 H 0.97003 * 119.99559 * 180.02562 * 7 6 4 25 25 H 1.09001 * 109.47274 * 59.99881 * 13 12 2 26 26 H 1.09006 * 109.47132 * 179.97438 * 13 12 2 27 27 H 1.09005 * 109.47408 * 299.99883 * 13 12 2 28 28 H 1.09001 * 109.47251 * 54.81194 * 14 12 2 29 29 H 1.08993 * 109.46805 * 174.81845 * 14 12 2 30 30 H 1.09010 * 109.46869 * 294.81681 * 14 12 2 31 31 H 1.08004 * 120.79056 * 359.97438 * 16 15 12 32 32 H 1.07997 * 120.41921 * 180.02562 * 17 16 15 33 33 H 1.07998 * 119.62341 * 179.97438 * 18 17 16 34 34 H 1.07995 * 119.61503 * 180.30698 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.5934 -1.6280 -1.1331 6 6 1.7755 -0.1887 -2.4807 7 7 1.9445 -0.9336 -3.5515 8 14 1.1873 1.5758 -2.6538 9 1 2.3492 2.4607 -2.9225 10 1 0.2238 1.6683 -3.7800 11 1 0.5214 2.0012 -1.3965 12 6 2.0400 -0.7214 1.2492 13 6 1.4217 -0.0834 2.4947 14 6 1.6446 -2.1979 1.1827 15 6 3.5410 -0.6060 1.3182 16 6 4.2508 -1.2640 2.3112 17 6 5.6303 -1.1287 2.3361 18 6 6.2479 -0.3477 1.3775 19 7 5.5407 0.2637 0.4475 20 6 4.2278 0.1526 0.3896 21 1 -0.3633 0.5686 0.8560 22 1 -0.3634 0.4570 -0.9204 23 1 -0.3634 -1.0256 0.0645 24 1 1.7642 -0.5664 -4.4310 25 1 0.3360 -0.1668 2.4447 26 1 1.7847 -0.5976 3.3846 27 1 1.7034 0.9686 2.5421 28 1 2.0073 -2.6295 0.2498 29 1 2.0857 -2.7304 2.0252 30 1 0.5589 -2.2855 1.2256 31 1 3.7410 -1.8668 3.0482 32 1 6.2150 -1.6273 3.0950 33 1 7.3221 -0.2368 1.3901 34 1 3.6828 0.6643 -0.3898 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261133628.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:40 Heat of formation + Delta-G solvation = 8.030987 kcal Electronic energy + Delta-G solvation = -15361.743443 eV Core-core repulsion = 13065.601495 eV Total energy + Delta-G solvation = -2296.141948 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.33579 -38.56170 -34.70448 -33.13636 -31.84121 -30.60232 -28.28372 -26.88073 -25.09313 -24.06137 -22.72964 -19.64289 -18.60350 -18.06696 -16.99541 -16.58173 -15.86802 -15.21574 -15.00650 -14.75783 -14.36046 -14.24068 -13.85076 -13.68423 -13.55104 -12.93778 -12.79197 -12.55076 -12.44543 -12.15633 -11.92072 -11.53066 -11.43280 -11.00717 -10.83093 -10.56349 -10.38189 -10.08494 -9.61460 -8.22105 -6.15700 0.43020 0.55430 1.33466 1.40413 1.47017 2.40015 3.06358 3.16169 3.72170 3.99403 4.04674 4.22882 4.31345 4.40264 4.52005 4.55822 4.77779 4.84319 4.90270 4.95905 5.04494 5.13405 5.18219 5.22230 5.25768 5.32790 5.41458 5.51998 5.63947 5.68035 5.79421 5.88950 6.07993 6.45649 6.88325 7.27342 7.44648 8.94427 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.027805 B = 0.012179 C = 0.010093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.762735 B = 2298.440185 C = 2773.508189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.015 3.985 3 H 0.017 0.983 4 C -0.488 4.488 5 H 0.039 0.961 6 C 0.017 3.983 7 N -0.946 5.946 8 Si 0.909 3.091 9 H -0.287 1.287 10 H -0.293 1.293 11 H -0.223 1.223 12 C -0.009 4.009 13 C -0.133 4.133 14 C -0.123 4.123 15 C -0.109 4.109 16 C -0.084 4.084 17 C -0.171 4.171 18 C 0.065 3.935 19 N -0.527 5.527 20 C 0.089 3.911 21 H 0.059 0.941 22 H 0.027 0.973 23 H 0.051 0.949 24 H 0.259 0.741 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.047 0.953 28 H 0.033 0.967 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.157 0.843 32 H 0.169 0.831 33 H 0.174 0.826 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.483 0.702 15.217 15.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.004 4.004 3 H 0.035 0.965 4 C -0.526 4.526 5 H 0.057 0.943 6 C -0.179 4.179 7 N -0.587 5.587 8 Si 0.735 3.265 9 H -0.214 1.214 10 H -0.219 1.219 11 H -0.145 1.145 12 C -0.010 4.010 13 C -0.190 4.190 14 C -0.180 4.180 15 C -0.111 4.111 16 C -0.110 4.110 17 C -0.190 4.190 18 C -0.092 4.092 19 N -0.236 5.236 20 C -0.066 4.066 21 H 0.078 0.922 22 H 0.046 0.954 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.175 0.825 32 H 0.186 0.814 33 H 0.191 0.809 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.888 1.218 14.420 14.594 hybrid contribution -0.493 0.174 -0.730 0.898 sum 1.395 1.392 13.689 13.830 Atomic orbital electron populations 1.22181 0.97341 1.00849 0.99550 1.19194 0.93328 0.94980 0.92858 0.96454 1.21187 1.32836 1.08521 0.90076 0.94311 1.25688 0.95762 1.00620 0.95863 1.70119 1.52245 1.37460 0.98900 0.86433 0.78342 0.82398 0.79346 1.21413 1.21907 1.14540 1.19378 0.89028 0.96686 0.95884 1.21916 1.01283 1.00004 0.95768 1.21802 1.01274 0.94227 1.00733 1.20956 0.97556 0.97093 0.95462 1.21757 0.94531 0.97259 0.97417 1.22401 0.95257 1.00417 1.00959 1.23235 1.01162 0.93948 0.90895 1.67679 1.08752 1.22686 1.24503 1.23016 0.89654 0.96826 0.97078 0.92204 0.95384 0.93014 0.93161 0.91030 0.91082 0.93422 0.94824 0.91735 0.91950 0.82538 0.81392 0.80866 0.84216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.56 7.69 71.98 0.55 -5.00 16 2 C 0.02 0.65 0.74 -11.54 -0.01 0.64 16 3 H 0.02 0.78 5.59 -2.39 -0.01 0.77 16 4 C -0.49 -26.21 5.89 25.60 0.15 -26.06 16 5 H 0.04 2.35 6.37 -2.91 -0.02 2.33 16 6 C 0.02 0.99 5.34 84.65 0.45 1.45 16 7 N -0.95 -59.25 13.96 21.45 0.30 -58.95 16 8 Si 0.91 43.86 25.76 68.60 1.77 45.63 16 9 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 10 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 11 H -0.22 -9.59 5.45 99.48 0.54 -9.05 16 12 C -0.01 -0.32 0.41 -52.93 -0.02 -0.34 16 13 C -0.13 -3.63 7.84 71.98 0.56 -3.06 16 14 C -0.12 -4.22 7.74 71.98 0.56 -3.67 16 15 C -0.11 -3.99 4.51 -19.77 -0.09 -4.08 16 16 C -0.08 -2.41 8.84 22.47 0.20 -2.21 16 17 C -0.17 -4.42 10.11 22.36 0.23 -4.20 16 18 C 0.06 2.00 11.18 84.69 0.95 2.95 16 19 N -0.53 -21.55 10.36 -195.84 -2.03 -23.58 16 20 C 0.09 3.87 9.45 84.67 0.80 4.67 16 21 H 0.06 1.93 6.56 -2.39 -0.02 1.91 16 22 H 0.03 1.16 4.91 -2.39 -0.01 1.15 16 23 H 0.05 1.97 6.53 -2.39 -0.02 1.96 16 24 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 25 H 0.07 1.80 6.42 -2.39 -0.02 1.79 16 26 H 0.07 1.58 7.75 -2.38 -0.02 1.56 16 27 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.03 1.41 6.04 -2.39 -0.01 1.40 16 29 H 0.06 1.78 7.02 -2.39 -0.02 1.76 16 30 H 0.06 1.99 6.76 -2.38 -0.02 1.97 16 31 H 0.16 3.42 7.22 -2.91 -0.02 3.40 16 32 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 33 H 0.17 4.09 8.06 -2.91 -0.02 4.07 16 34 H 0.14 6.89 5.07 -2.91 -0.01 6.88 16 Total: -1.00 -67.24 258.29 5.30 -61.94 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.93 Total: 13.87 kcal Atomic # 6 Polarization: -43.23 SS G_CDS: 4.33 Total: -38.90 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -1.73 Total: -82.53 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.77 Total: 45.63 kcal Total: -67.24 5.30 -61.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261133628.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.973 kcal (2) G-P(sol) polarization free energy of solvation -67.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds