Wall clock time and date at job start Mon Mar 30 2020 02:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52993 * 109.47036 * 2 1 4 4 H 1.09003 * 109.47209 * 54.41209 * 3 2 1 5 5 C 1.52993 * 109.47401 * 174.41265 * 3 2 1 6 6 C 1.53007 * 109.47093 * 294.41331 * 3 2 1 7 7 H 1.08996 * 109.47060 * 56.26319 * 6 3 2 8 8 C 1.50701 * 109.46959 * 176.25955 * 6 3 2 9 9 H 1.08002 * 119.99362 * 114.64785 * 8 6 3 10 10 C 1.37878 * 120.00484 * 294.64764 * 8 6 3 11 11 N 1.31508 * 120.00048 * 177.61991 * 10 8 6 12 12 Si 1.86798 * 119.99629 * 357.62877 * 10 8 6 13 13 H 1.48494 * 109.47436 * 92.52224 * 12 10 8 14 14 H 1.48504 * 109.46688 * 212.52244 * 12 10 8 15 15 H 1.48498 * 109.47234 * 332.51662 * 12 10 8 16 16 C 1.50693 * 109.47106 * 296.26061 * 6 3 2 17 17 C 1.38223 * 119.61905 * 274.97975 * 16 6 3 18 18 C 1.38633 * 119.16282 * 180.02562 * 17 16 6 19 19 C 1.38678 * 118.42016 * 359.97438 * 18 17 16 20 20 C 1.38182 * 119.16023 * 0.02562 * 19 18 17 21 21 N 1.31855 * 119.61599 * 94.99892 * 16 6 3 22 22 H 1.08999 * 109.46648 * 175.59135 * 1 2 3 23 23 H 1.08995 * 109.46746 * 295.58815 * 1 2 3 24 24 H 1.09001 * 109.47088 * 55.59620 * 1 2 3 25 25 H 1.09000 * 109.47133 * 239.99828 * 2 1 3 26 26 H 1.09000 * 109.46968 * 120.00374 * 2 1 3 27 27 H 1.09000 * 109.47633 * 180.02562 * 5 3 2 28 28 H 1.09005 * 109.47004 * 299.99843 * 5 3 2 29 29 H 1.09003 * 109.46985 * 59.99806 * 5 3 2 30 30 H 0.97006 * 120.00143 * 180.02562 * 11 10 8 31 31 H 1.07999 * 120.42101 * 0.04788 * 17 16 6 32 32 H 1.08001 * 120.79315 * 180.02562 * 18 17 16 33 33 H 1.07997 * 120.41891 * 179.97438 * 19 18 17 34 34 H 1.08003 * 119.61761 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5973 1.9844 0.8357 5 6 3.5635 1.4448 0.1404 6 6 1.6479 2.1220 -1.3136 7 1 0.5676 2.0617 -1.4455 8 6 2.0693 3.5684 -1.2762 9 1 2.8286 3.9273 -1.9552 10 6 1.4856 4.4336 -0.3752 11 7 1.8862 5.6845 -0.3105 12 14 0.1258 3.8287 0.7538 13 1 0.7153 3.3695 2.0370 14 1 -0.8290 4.9355 1.0156 15 1 -0.5901 2.7004 0.1060 16 6 2.3338 1.4285 -2.4622 17 6 3.6214 1.7922 -2.8092 18 6 4.2432 1.1483 -3.8678 19 6 3.5437 0.1578 -4.5406 20 6 2.2590 -0.1519 -4.1367 21 7 1.6986 0.4820 -3.1250 22 1 -0.3632 -1.0246 -0.0790 23 1 -0.3633 0.4438 0.9269 24 1 -0.3633 0.5807 -0.8479 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.9268 2.4725 0.1409 28 1 3.8429 0.9607 1.0763 29 1 4.0063 0.9029 -0.6953 30 1 1.4758 6.2931 0.3237 31 1 4.1367 2.5679 -2.2622 32 1 5.2489 1.4113 -4.1610 33 1 3.9969 -0.3643 -5.3703 34 1 1.7073 -0.9217 -4.6557 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261139268.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:35 Heat of formation + Delta-G solvation = 19.756600 kcal Electronic energy + Delta-G solvation = -15376.214366 eV Core-core repulsion = 13080.580879 eV Total energy + Delta-G solvation = -2295.633488 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.78022 -36.55962 -32.59287 -31.83700 -31.18694 -29.18214 -27.50169 -23.92412 -22.94676 -22.51377 -21.24000 -19.05949 -16.68567 -15.99887 -15.36869 -15.00025 -14.70607 -13.89659 -13.39670 -13.18823 -13.00418 -12.76929 -12.52006 -12.25296 -11.81008 -11.33590 -11.24383 -10.96879 -10.66587 -10.31170 -10.19289 -9.98869 -9.75376 -9.40460 -9.24798 -9.00693 -8.61105 -8.56318 -8.13007 -6.10630 -4.10440 1.81369 1.91877 3.28138 3.39286 3.43100 4.40189 4.49575 5.01816 5.21640 5.31667 5.48046 5.60652 5.72264 5.73524 5.82774 5.88045 6.08348 6.27271 6.34289 6.38445 6.44479 6.52183 6.62034 6.66749 6.69826 6.80307 6.88009 7.09171 7.14575 7.16903 7.39101 7.47451 7.69170 8.44505 8.75062 8.90678 9.50473 11.01063 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.028250 B = 0.012507 C = 0.010390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.901718 B = 2238.132926 C = 2694.222226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.086 4.086 4 H 0.062 0.938 5 C -0.137 4.137 6 C 0.058 3.942 7 H 0.053 0.947 8 C -0.513 4.513 9 H 0.080 0.920 10 C 0.077 3.923 11 N -0.897 5.897 12 Si 0.867 3.133 13 H -0.277 1.277 14 H -0.295 1.295 15 H -0.252 1.252 16 C 0.181 3.819 17 C -0.150 4.150 18 C -0.091 4.091 19 C -0.201 4.201 20 C 0.085 3.915 21 N -0.492 5.492 22 H 0.041 0.959 23 H 0.042 0.958 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.044 0.956 27 H 0.072 0.928 28 H 0.032 0.968 29 H 0.044 0.956 30 H 0.264 0.736 31 H 0.144 0.856 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.129 -10.407 -2.804 10.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.105 4.105 4 H 0.080 0.920 5 C -0.194 4.194 6 C 0.039 3.961 7 H 0.071 0.929 8 C -0.551 4.551 9 H 0.098 0.902 10 C -0.125 4.125 11 N -0.535 5.535 12 Si 0.696 3.304 13 H -0.203 1.203 14 H -0.222 1.222 15 H -0.176 1.176 16 C 0.044 3.956 17 C -0.170 4.170 18 C -0.117 4.117 19 C -0.221 4.221 20 C -0.072 4.072 21 N -0.201 5.201 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.161 0.839 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.253 -10.456 -2.482 10.819 hybrid contribution 0.227 0.053 0.335 0.408 sum 1.480 -10.403 -2.147 10.724 Atomic orbital electron populations 1.21821 0.96542 1.00404 1.01793 1.21632 0.95741 0.97748 1.00563 1.21399 0.96009 0.93992 0.99131 0.91986 1.21818 0.95994 1.02541 0.99065 1.18384 0.96719 0.94176 0.86864 0.92899 1.20997 1.23454 0.90433 1.20213 0.90211 1.24897 0.96322 0.94632 0.96672 1.69879 1.42284 1.04496 1.36814 0.87083 0.82861 0.78826 0.81624 1.20340 1.22211 1.17574 1.21642 0.90788 0.89182 0.93972 1.22242 0.96829 1.00553 0.97393 1.21552 0.99620 0.95242 0.95242 1.21887 0.97059 1.00822 1.02312 1.22581 0.92654 0.97998 0.93966 1.67624 1.37621 1.07909 1.06973 0.93952 0.93926 0.91470 0.92106 0.93717 0.90949 0.94863 0.93655 0.92590 0.83873 0.85941 0.86188 0.84066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.23 37.16 0.34 -2.34 16 2 C -0.12 -2.23 5.27 -26.73 -0.14 -2.37 16 3 C -0.09 -1.82 1.77 -90.62 -0.16 -1.98 16 4 H 0.06 1.41 4.21 -51.93 -0.22 1.19 16 5 C -0.14 -2.68 7.98 37.15 0.30 -2.38 16 6 C 0.06 1.34 1.38 -92.92 -0.13 1.21 16 7 H 0.05 1.30 4.90 -51.93 -0.25 1.05 16 8 C -0.51 -13.61 7.41 -34.44 -0.26 -13.86 16 9 H 0.08 2.26 6.40 -52.49 -0.34 1.92 16 10 C 0.08 2.13 5.45 -17.82 -0.10 2.04 16 11 N -0.90 -26.50 13.96 55.43 0.77 -25.72 16 12 Si 0.87 21.13 24.75 -169.99 -4.21 16.93 16 13 H -0.28 -6.62 6.92 56.52 0.39 -6.23 16 14 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 15 H -0.25 -5.83 5.56 56.52 0.31 -5.52 16 16 C 0.18 3.83 4.44 -82.59 -0.37 3.46 16 17 C -0.15 -2.92 6.73 -39.44 -0.27 -3.19 16 18 C -0.09 -1.46 10.18 -39.27 -0.40 -1.86 16 19 C -0.20 -3.00 10.11 -39.44 -0.40 -3.40 16 20 C 0.08 1.39 11.18 -17.55 -0.20 1.20 16 21 N -0.49 -9.78 9.43 -9.47 -0.09 -9.87 16 22 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.07 1.33 6.13 -51.93 -0.32 1.01 16 25 H 0.06 1.15 6.53 -51.93 -0.34 0.81 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.07 1.53 7.34 -51.93 -0.38 1.15 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.04 0.84 5.91 -51.93 -0.31 0.53 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.14 2.89 6.31 -52.49 -0.33 2.56 16 32 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.14 1.86 8.06 -52.48 -0.42 1.43 16 LS Contribution 261.63 15.07 3.94 3.94 Total: -1.00 -28.88 261.63 -6.03 -34.90 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -4.68 Total: 3.29 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: -1.77 Total: -23.48 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.68 Total: -35.59 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.21 Total: 16.93 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.88 -6.03 -34.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261139268.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.660 kcal (2) G-P(sol) polarization free energy of solvation -28.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds