Wall clock time and date at job start Mon Mar 30 2020 02:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52993 * 109.47036 * 2 1 4 4 H 1.09003 * 109.47209 * 54.41209 * 3 2 1 5 5 C 1.52993 * 109.47401 * 174.41265 * 3 2 1 6 6 C 1.53007 * 109.47093 * 294.41331 * 3 2 1 7 7 H 1.08996 * 109.47060 * 56.26319 * 6 3 2 8 8 C 1.50701 * 109.46959 * 176.25955 * 6 3 2 9 9 H 1.08002 * 119.99362 * 114.64785 * 8 6 3 10 10 C 1.37878 * 120.00484 * 294.64764 * 8 6 3 11 11 N 1.31508 * 120.00048 * 177.61991 * 10 8 6 12 12 Si 1.86798 * 119.99629 * 357.62877 * 10 8 6 13 13 H 1.48494 * 109.47436 * 92.52224 * 12 10 8 14 14 H 1.48504 * 109.46688 * 212.52244 * 12 10 8 15 15 H 1.48498 * 109.47234 * 332.51662 * 12 10 8 16 16 C 1.50693 * 109.47106 * 296.26061 * 6 3 2 17 17 C 1.38223 * 119.61905 * 274.97975 * 16 6 3 18 18 C 1.38633 * 119.16282 * 180.02562 * 17 16 6 19 19 C 1.38678 * 118.42016 * 359.97438 * 18 17 16 20 20 C 1.38182 * 119.16023 * 0.02562 * 19 18 17 21 21 N 1.31855 * 119.61599 * 94.99892 * 16 6 3 22 22 H 1.08999 * 109.46648 * 175.59135 * 1 2 3 23 23 H 1.08995 * 109.46746 * 295.58815 * 1 2 3 24 24 H 1.09001 * 109.47088 * 55.59620 * 1 2 3 25 25 H 1.09000 * 109.47133 * 239.99828 * 2 1 3 26 26 H 1.09000 * 109.46968 * 120.00374 * 2 1 3 27 27 H 1.09000 * 109.47633 * 180.02562 * 5 3 2 28 28 H 1.09005 * 109.47004 * 299.99843 * 5 3 2 29 29 H 1.09003 * 109.46985 * 59.99806 * 5 3 2 30 30 H 0.97006 * 120.00143 * 180.02562 * 11 10 8 31 31 H 1.07999 * 120.42101 * 0.04788 * 17 16 6 32 32 H 1.08001 * 120.79315 * 180.02562 * 18 17 16 33 33 H 1.07997 * 120.41891 * 179.97438 * 19 18 17 34 34 H 1.08003 * 119.61761 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5973 1.9844 0.8357 5 6 3.5635 1.4448 0.1404 6 6 1.6479 2.1220 -1.3136 7 1 0.5676 2.0617 -1.4455 8 6 2.0693 3.5684 -1.2762 9 1 2.8286 3.9273 -1.9552 10 6 1.4856 4.4336 -0.3752 11 7 1.8862 5.6845 -0.3105 12 14 0.1258 3.8287 0.7538 13 1 0.7153 3.3695 2.0370 14 1 -0.8290 4.9355 1.0156 15 1 -0.5901 2.7004 0.1060 16 6 2.3338 1.4285 -2.4622 17 6 3.6214 1.7922 -2.8092 18 6 4.2432 1.1483 -3.8678 19 6 3.5437 0.1578 -4.5406 20 6 2.2590 -0.1519 -4.1367 21 7 1.6986 0.4820 -3.1250 22 1 -0.3632 -1.0246 -0.0790 23 1 -0.3633 0.4438 0.9269 24 1 -0.3633 0.5807 -0.8479 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.9268 2.4725 0.1409 28 1 3.8429 0.9607 1.0763 29 1 4.0063 0.9029 -0.6953 30 1 1.4758 6.2931 0.3237 31 1 4.1367 2.5679 -2.2622 32 1 5.2489 1.4113 -4.1610 33 1 3.9969 -0.3643 -5.3703 34 1 1.7073 -0.9217 -4.6557 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261139268.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:34 Heat of formation + Delta-G solvation = 2.219086 kcal Electronic energy + Delta-G solvation = -15376.974850 eV Core-core repulsion = 13080.580879 eV Total energy + Delta-G solvation = -2296.393971 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.22011 -38.14712 -34.56705 -33.20078 -32.77671 -30.66678 -29.26925 -25.66165 -24.44759 -23.91996 -22.82115 -20.70488 -18.59759 -17.42549 -16.92498 -16.68551 -16.11107 -15.58587 -15.09306 -14.82375 -14.45947 -14.43115 -13.97245 -13.68379 -13.44813 -12.97595 -12.84677 -12.64809 -12.34486 -11.95701 -11.89901 -11.70442 -11.43200 -11.16487 -10.90244 -10.65066 -10.52272 -10.07175 -9.55471 -8.26046 -6.27577 0.45121 0.58063 1.31441 1.37760 1.48221 2.35783 3.03992 3.16582 3.63729 4.04908 4.15778 4.21223 4.25727 4.29713 4.42825 4.50471 4.58882 4.75788 4.86360 4.97297 4.99537 5.04684 5.10727 5.17781 5.20520 5.37704 5.46388 5.49727 5.53793 5.56983 5.70110 5.73457 6.03087 6.35764 6.75994 7.31893 7.38782 8.88923 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.028250 B = 0.012507 C = 0.010390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.901718 B = 2238.132926 C = 2694.222226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C -0.088 4.088 4 H 0.045 0.955 5 C -0.129 4.129 6 C 0.063 3.937 7 H 0.035 0.965 8 C -0.502 4.502 9 H 0.048 0.952 10 C 0.023 3.977 11 N -0.945 5.945 12 Si 0.919 3.081 13 H -0.267 1.267 14 H -0.301 1.301 15 H -0.235 1.235 16 C 0.154 3.846 17 C -0.172 4.172 18 C -0.086 4.086 19 C -0.183 4.183 20 C 0.079 3.921 21 N -0.513 5.513 22 H 0.068 0.932 23 H 0.043 0.957 24 H 0.045 0.955 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.043 0.957 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.264 0.736 31 H 0.120 0.880 32 H 0.154 0.846 33 H 0.166 0.834 34 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.270 -13.486 -3.638 14.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C -0.108 4.108 4 H 0.063 0.937 5 C -0.186 4.186 6 C 0.044 3.956 7 H 0.053 0.947 8 C -0.541 4.541 9 H 0.066 0.934 10 C -0.174 4.174 11 N -0.586 5.586 12 Si 0.746 3.254 13 H -0.193 1.193 14 H -0.228 1.228 15 H -0.159 1.159 16 C 0.017 3.983 17 C -0.192 4.192 18 C -0.112 4.112 19 C -0.202 4.202 20 C -0.078 4.078 21 N -0.223 5.223 22 H 0.087 0.913 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.138 0.862 32 H 0.171 0.829 33 H 0.183 0.817 34 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 1.397 -13.555 -3.316 14.025 hybrid contribution 0.275 0.949 0.416 1.073 sum 1.672 -12.606 -2.899 13.043 Atomic orbital electron populations 1.21802 0.96088 1.01726 1.00864 1.21550 0.96121 0.95728 1.01512 1.21342 0.96829 0.95498 0.97086 0.93697 1.21717 0.95100 1.01166 1.00633 1.18168 0.95695 0.92342 0.89439 0.94691 1.21241 1.21700 0.92657 1.18458 0.93369 1.25613 0.98653 0.94678 0.98453 1.70013 1.44260 1.05907 1.38394 0.86242 0.80313 0.78550 0.80303 1.19312 1.22817 1.15869 1.21259 0.91558 0.90880 0.94573 1.22102 0.96725 1.01184 0.99164 1.21918 1.00930 0.94664 0.93707 1.22356 0.96144 0.99396 1.02294 1.23263 0.93693 0.97955 0.92874 1.67545 1.38299 1.08163 1.08258 0.91297 0.93798 0.93636 0.92219 0.91498 0.93760 0.92527 0.92825 0.92730 0.86185 0.82854 0.81661 0.80504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.02 9.23 71.99 0.66 -4.35 16 2 C -0.11 -3.93 5.27 30.60 0.16 -3.77 16 3 C -0.09 -3.70 1.77 -10.80 -0.02 -3.72 16 4 H 0.04 2.01 4.21 -2.39 -0.01 2.00 16 5 C -0.13 -5.01 7.98 71.98 0.57 -4.44 16 6 C 0.06 2.96 1.38 -12.29 -0.02 2.94 16 7 H 0.04 1.75 4.90 -2.39 -0.01 1.74 16 8 C -0.50 -27.83 7.41 25.60 0.19 -27.64 16 9 H 0.05 2.91 6.40 -2.91 -0.02 2.89 16 10 C 0.02 1.34 5.45 84.66 0.46 1.80 16 11 N -0.95 -58.38 13.96 21.45 0.30 -58.09 16 12 Si 0.92 44.57 24.75 68.60 1.70 46.26 16 13 H -0.27 -12.43 6.92 99.48 0.69 -11.74 16 14 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 15 H -0.24 -10.67 5.56 99.48 0.55 -10.12 16 16 C 0.15 6.46 4.44 42.55 0.19 6.65 16 17 C -0.17 -6.66 6.73 22.36 0.15 -6.51 16 18 C -0.09 -2.55 10.18 22.47 0.23 -2.33 16 19 C -0.18 -4.63 10.11 22.36 0.23 -4.40 16 20 C 0.08 2.31 11.18 84.67 0.95 3.25 16 21 N -0.51 -19.52 9.43 -183.89 -1.73 -21.26 16 22 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 23 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.04 1.73 6.13 -2.39 -0.01 1.72 16 25 H 0.06 2.12 6.53 -2.39 -0.02 2.11 16 26 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.04 1.93 7.34 -2.39 -0.02 1.91 16 28 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.05 1.97 5.91 -2.39 -0.01 1.95 16 30 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 31 H 0.12 5.10 6.31 -2.91 -0.02 5.08 16 32 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 33 H 0.17 2.74 8.06 -2.91 -0.02 2.72 16 34 H 0.18 3.78 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -65.08 261.63 4.93 -60.15 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.91 Total: 15.42 kcal Atomic # 6 Polarization: -46.25 SS G_CDS: 3.76 Total: -42.50 kcal Atomic # 7 Polarization: -77.91 SS G_CDS: -1.43 Total: -79.34 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.70 Total: 46.26 kcal Total: -65.08 4.93 -60.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261139268.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.373 kcal (2) G-P(sol) polarization free energy of solvation -65.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds