Wall clock time and date at job start Mon Mar 30 2020 02:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47222 * 2 1 4 4 H 1.09002 * 109.47493 * 51.77823 * 3 2 1 5 5 C 1.52997 * 109.46971 * 171.77870 * 3 2 1 6 6 C 1.52998 * 109.47105 * 291.77714 * 3 2 1 7 7 H 1.09005 * 109.47073 * 186.96727 * 6 3 2 8 8 C 1.50703 * 109.47375 * 66.96700 * 6 3 2 9 9 H 1.08000 * 120.00022 * 245.03115 * 8 6 3 10 10 C 1.37869 * 119.99756 * 65.02628 * 8 6 3 11 11 N 1.31516 * 120.00641 * 5.58124 * 10 8 6 12 12 Si 1.86802 * 120.00072 * 185.57892 * 10 8 6 13 13 H 1.48502 * 109.47057 * 59.99801 * 12 10 8 14 14 H 1.48501 * 109.47568 * 180.02562 * 12 10 8 15 15 H 1.48510 * 109.46968 * 300.00405 * 12 10 8 16 16 C 1.50705 * 109.47150 * 306.96646 * 6 3 2 17 17 C 1.38224 * 119.61778 * 85.88907 * 16 6 3 18 18 C 1.38631 * 119.16246 * 179.74909 * 17 16 6 19 19 C 1.38678 * 118.41657 * 0.47015 * 18 17 16 20 20 C 1.38182 * 119.16218 * 359.50848 * 19 18 17 21 21 N 1.31857 * 119.61648 * 265.86849 * 16 6 3 22 22 H 1.09007 * 109.47023 * 309.77187 * 1 2 3 23 23 H 1.09006 * 109.47266 * 69.76759 * 1 2 3 24 24 H 1.08999 * 109.47268 * 189.77045 * 1 2 3 25 25 H 1.08995 * 109.47022 * 239.99985 * 2 1 3 26 26 H 1.08998 * 109.46764 * 119.99816 * 2 1 3 27 27 H 1.09007 * 109.47183 * 184.73955 * 5 3 2 28 28 H 1.09007 * 109.47301 * 304.72692 * 5 3 2 29 29 H 1.09000 * 109.47498 * 64.73527 * 5 3 2 30 30 H 0.96991 * 120.00435 * 180.02562 * 11 10 8 31 31 H 1.08005 * 120.42101 * 359.97438 * 17 16 6 32 32 H 1.07999 * 120.79191 * 180.23252 * 18 17 16 33 33 H 1.07998 * 120.41488 * 179.77923 * 19 18 17 34 34 H 1.07998 * 119.61565 * 180.25306 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5617 1.9970 0.8074 5 6 3.5560 1.4473 0.2063 6 6 1.7054 2.1017 -1.3395 7 1 2.1747 3.0844 -1.3881 8 6 0.2113 2.2517 -1.4664 9 1 -0.3230 1.7079 -2.2313 10 6 -0.4736 3.0831 -0.6058 11 7 0.1868 3.8285 0.2532 12 14 -2.3396 3.1509 -0.6599 13 1 -2.8924 1.8030 -0.3723 14 1 -2.8297 4.1149 0.3579 15 1 -2.7801 3.5891 -2.0087 16 6 2.2214 1.2424 -2.4650 17 6 1.4420 0.2076 -2.9470 18 6 1.9237 -0.5736 -3.9860 19 6 3.1811 -0.2895 -4.4972 20 6 3.9027 0.7617 -3.9645 21 7 3.4109 1.4868 -2.9789 22 1 -0.3633 0.6575 0.7899 23 1 -0.3634 0.3554 -0.9643 24 1 -0.3634 -1.0127 0.1744 25 1 1.8933 -0.5138 -0.8899 26 1 1.8932 -0.5138 0.8900 27 1 3.9079 2.4756 0.2905 28 1 3.8002 0.9040 1.1191 29 1 4.0399 0.9661 -0.6436 30 1 -0.2950 4.4132 0.8588 31 1 0.4685 0.0123 -2.5219 32 1 1.3353 -1.3864 -4.3853 33 1 3.5893 -0.8797 -5.3042 34 1 4.8810 0.9919 -4.3598 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261139270.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:36 Heat of formation + Delta-G solvation = 21.772292 kcal Electronic energy + Delta-G solvation = -15459.026773 eV Core-core repulsion = 13163.480692 eV Total energy + Delta-G solvation = -2295.546081 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.70333 -36.38396 -32.18262 -31.87902 -30.69783 -29.28549 -27.16106 -23.86870 -22.76953 -22.34405 -21.06677 -18.61666 -16.54388 -16.07968 -15.31916 -14.71286 -14.61521 -14.11235 -13.02993 -12.89849 -12.64522 -12.54582 -12.15798 -12.01905 -11.44650 -11.10467 -10.95004 -10.76693 -10.64895 -10.34830 -10.04993 -9.66398 -9.60576 -9.38527 -9.14276 -8.93299 -8.53261 -8.29219 -7.97418 -6.05574 -4.02676 1.89610 1.98902 3.28889 3.34441 3.36766 4.37755 4.60314 5.15627 5.26872 5.36169 5.57037 5.74143 5.93134 6.03116 6.11395 6.25066 6.40379 6.44408 6.51998 6.59519 6.73231 6.78921 6.82926 6.94139 7.03281 7.10146 7.23204 7.42988 7.46814 7.66652 7.71414 7.86722 7.98568 8.29705 8.84135 8.93261 9.52635 11.03002 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.029724 B = 0.011329 C = 0.010348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.761091 B = 2470.888913 C = 2705.176959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C -0.075 4.075 4 H 0.094 0.906 5 C -0.142 4.142 6 C 0.094 3.906 7 H 0.052 0.948 8 C -0.508 4.508 9 H 0.061 0.939 10 C 0.070 3.930 11 N -0.882 5.882 12 Si 0.880 3.120 13 H -0.273 1.273 14 H -0.287 1.287 15 H -0.278 1.278 16 C 0.178 3.822 17 C -0.161 4.161 18 C -0.092 4.092 19 C -0.205 4.205 20 C 0.085 3.915 21 N -0.493 5.493 22 H 0.049 0.951 23 H 0.090 0.910 24 H 0.014 0.986 25 H 0.046 0.954 26 H 0.032 0.968 27 H 0.047 0.953 28 H 0.031 0.969 29 H 0.043 0.957 30 H 0.262 0.738 31 H 0.143 0.857 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.797 -7.320 -3.961 8.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.095 4.095 4 H 0.112 0.888 5 C -0.200 4.200 6 C 0.074 3.926 7 H 0.070 0.930 8 C -0.546 4.546 9 H 0.079 0.921 10 C -0.133 4.133 11 N -0.520 5.520 12 Si 0.707 3.293 13 H -0.198 1.198 14 H -0.213 1.213 15 H -0.203 1.203 16 C 0.041 3.959 17 C -0.181 4.181 18 C -0.118 4.118 19 C -0.226 4.226 20 C -0.071 4.071 21 N -0.202 5.202 22 H 0.068 0.932 23 H 0.109 0.891 24 H 0.033 0.967 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.160 0.840 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.273 -6.488 -3.481 8.058 hybrid contribution -1.469 -0.706 -0.406 1.679 sum 1.805 -7.194 -3.887 8.374 Atomic orbital electron populations 1.22122 0.95778 0.97452 1.04967 1.21522 0.96666 0.97405 0.98913 1.21118 0.92681 0.94777 1.00896 0.88778 1.21883 0.98364 1.00562 0.99174 1.17865 0.95327 0.93323 0.86036 0.92951 1.20954 0.91065 1.26411 1.16140 0.92096 1.24826 0.97779 0.95025 0.95633 1.69918 1.35260 1.25144 1.21655 0.86843 0.86409 0.78155 0.77865 1.19803 1.21276 1.20310 1.22193 0.87377 0.92108 0.94181 1.22311 1.02269 0.96548 0.96923 1.21529 0.95482 0.98802 0.96015 1.21856 0.96742 1.00980 1.02977 1.22609 0.99190 0.92038 0.93308 1.67693 1.14264 1.28190 1.10043 0.93232 0.89123 0.96690 0.93546 0.94964 0.93387 0.95023 0.93796 0.92793 0.83987 0.86164 0.86341 0.84197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.28 37.16 0.31 -2.69 16 2 C -0.11 -2.20 4.88 -26.73 -0.13 -2.33 16 3 C -0.08 -1.70 2.23 -90.62 -0.20 -1.91 16 4 H 0.09 2.38 6.49 -51.93 -0.34 2.05 16 5 C -0.14 -2.95 9.08 37.16 0.34 -2.62 16 6 C 0.09 2.27 1.78 -92.92 -0.17 2.10 16 7 H 0.05 1.45 8.12 -51.93 -0.42 1.03 16 8 C -0.51 -12.75 4.81 -34.44 -0.17 -12.92 16 9 H 0.06 1.50 5.67 -52.49 -0.30 1.20 16 10 C 0.07 1.81 4.68 -17.82 -0.08 1.72 16 11 N -0.88 -24.04 11.95 55.43 0.66 -23.38 16 12 Si 0.88 20.21 29.54 -169.99 -5.02 15.18 16 13 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 14 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 C 0.18 3.90 4.47 -82.58 -0.37 3.53 16 17 C -0.16 -3.15 6.58 -39.44 -0.26 -3.40 16 18 C -0.09 -1.52 10.18 -39.27 -0.40 -1.92 16 19 C -0.21 -3.19 10.11 -39.44 -0.40 -3.59 16 20 C 0.09 1.48 11.18 -17.55 -0.20 1.28 16 21 N -0.49 -10.37 9.44 -9.47 -0.09 -10.46 16 22 H 0.05 1.09 7.77 -51.93 -0.40 0.68 16 23 H 0.09 1.94 3.43 -51.93 -0.18 1.76 16 24 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.05 0.93 5.33 -51.93 -0.28 0.65 16 26 H 0.03 0.61 8.12 -51.93 -0.42 0.19 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 29 H 0.04 0.90 6.67 -51.93 -0.35 0.56 16 30 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.14 2.78 4.63 -52.48 -0.24 2.54 16 32 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 33 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.14 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 263.66 15.07 3.97 3.97 Total: -1.00 -27.02 263.66 -6.80 -33.82 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -4.60 Total: 3.60 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: -1.73 Total: -22.74 kcal Atomic # 7 Polarization: -34.41 SS G_CDS: 0.57 Total: -33.84 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -27.02 -6.80 -33.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261139270.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.594 kcal (2) G-P(sol) polarization free energy of solvation -27.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds