Wall clock time and date at job start Mon Mar 30 2020 02:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47222 * 2 1 4 4 H 1.09002 * 109.47493 * 51.77823 * 3 2 1 5 5 C 1.52997 * 109.46971 * 171.77870 * 3 2 1 6 6 C 1.52998 * 109.47105 * 291.77714 * 3 2 1 7 7 H 1.09005 * 109.47073 * 186.96727 * 6 3 2 8 8 C 1.50703 * 109.47375 * 66.96700 * 6 3 2 9 9 H 1.08000 * 120.00022 * 245.03115 * 8 6 3 10 10 C 1.37869 * 119.99756 * 65.02628 * 8 6 3 11 11 N 1.31516 * 120.00641 * 5.58124 * 10 8 6 12 12 Si 1.86802 * 120.00072 * 185.57892 * 10 8 6 13 13 H 1.48502 * 109.47057 * 59.99801 * 12 10 8 14 14 H 1.48501 * 109.47568 * 180.02562 * 12 10 8 15 15 H 1.48510 * 109.46968 * 300.00405 * 12 10 8 16 16 C 1.50705 * 109.47150 * 306.96646 * 6 3 2 17 17 C 1.38224 * 119.61778 * 85.88907 * 16 6 3 18 18 C 1.38631 * 119.16246 * 179.74909 * 17 16 6 19 19 C 1.38678 * 118.41657 * 0.47015 * 18 17 16 20 20 C 1.38182 * 119.16218 * 359.50848 * 19 18 17 21 21 N 1.31857 * 119.61648 * 265.86849 * 16 6 3 22 22 H 1.09007 * 109.47023 * 309.77187 * 1 2 3 23 23 H 1.09006 * 109.47266 * 69.76759 * 1 2 3 24 24 H 1.08999 * 109.47268 * 189.77045 * 1 2 3 25 25 H 1.08995 * 109.47022 * 239.99985 * 2 1 3 26 26 H 1.08998 * 109.46764 * 119.99816 * 2 1 3 27 27 H 1.09007 * 109.47183 * 184.73955 * 5 3 2 28 28 H 1.09007 * 109.47301 * 304.72692 * 5 3 2 29 29 H 1.09000 * 109.47498 * 64.73527 * 5 3 2 30 30 H 0.96991 * 120.00435 * 180.02562 * 11 10 8 31 31 H 1.08005 * 120.42101 * 359.97438 * 17 16 6 32 32 H 1.07999 * 120.79191 * 180.23252 * 18 17 16 33 33 H 1.07998 * 120.41488 * 179.77923 * 19 18 17 34 34 H 1.07998 * 119.61565 * 180.25306 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5617 1.9970 0.8074 5 6 3.5560 1.4473 0.2063 6 6 1.7054 2.1017 -1.3395 7 1 2.1747 3.0844 -1.3881 8 6 0.2113 2.2517 -1.4664 9 1 -0.3230 1.7079 -2.2313 10 6 -0.4736 3.0831 -0.6058 11 7 0.1868 3.8285 0.2532 12 14 -2.3396 3.1509 -0.6599 13 1 -2.8924 1.8030 -0.3723 14 1 -2.8297 4.1149 0.3579 15 1 -2.7801 3.5891 -2.0087 16 6 2.2214 1.2424 -2.4650 17 6 1.4420 0.2076 -2.9470 18 6 1.9237 -0.5736 -3.9860 19 6 3.1811 -0.2895 -4.4972 20 6 3.9027 0.7617 -3.9645 21 7 3.4109 1.4868 -2.9789 22 1 -0.3633 0.6575 0.7899 23 1 -0.3634 0.3554 -0.9643 24 1 -0.3634 -1.0127 0.1744 25 1 1.8933 -0.5138 -0.8899 26 1 1.8932 -0.5138 0.8900 27 1 3.9079 2.4756 0.2905 28 1 3.8002 0.9040 1.1191 29 1 4.0399 0.9661 -0.6436 30 1 -0.2950 4.4132 0.8588 31 1 0.4685 0.0123 -2.5219 32 1 1.3353 -1.3864 -4.3853 33 1 3.5893 -0.8797 -5.3042 34 1 4.8810 0.9919 -4.3598 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261139270.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:36 Heat of formation + Delta-G solvation = 7.149851 kcal Electronic energy + Delta-G solvation = -15459.660850 eV Core-core repulsion = 13163.480692 eV Total energy + Delta-G solvation = -2296.180157 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.18732 -38.06489 -34.12843 -33.28718 -32.22404 -30.94585 -28.93652 -25.66291 -24.21566 -23.91887 -22.69164 -20.32888 -18.39009 -17.56387 -16.86460 -16.39771 -16.14470 -15.76225 -14.67476 -14.57451 -14.22780 -13.98676 -13.88007 -13.49803 -13.13418 -12.89493 -12.77282 -12.42915 -12.37440 -12.08681 -11.81258 -11.39394 -11.32853 -11.11320 -10.85087 -10.49190 -10.27296 -9.96416 -9.47246 -8.04652 -6.05611 0.50246 0.63383 1.44948 1.46346 1.51531 2.47032 3.14827 3.29254 3.77813 4.19437 4.20494 4.36657 4.42066 4.47878 4.55267 4.58224 4.77910 4.90641 5.02294 5.03771 5.13525 5.16622 5.33322 5.35367 5.40553 5.49311 5.55719 5.67281 5.77700 5.86109 5.99580 6.04368 6.19294 6.38574 6.91058 7.43323 7.52835 9.04170 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.029724 B = 0.011329 C = 0.010348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.761091 B = 2470.888913 C = 2705.176959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 C -0.074 4.074 4 H 0.059 0.941 5 C -0.132 4.132 6 C 0.098 3.902 7 H -0.002 1.002 8 C -0.502 4.502 9 H 0.065 0.935 10 C 0.026 3.974 11 N -0.917 5.917 12 Si 0.931 3.069 13 H -0.259 1.259 14 H -0.292 1.292 15 H -0.276 1.276 16 C 0.149 3.851 17 C -0.175 4.175 18 C -0.086 4.086 19 C -0.187 4.187 20 C 0.075 3.925 21 N -0.527 5.527 22 H 0.025 0.975 23 H 0.080 0.920 24 H 0.043 0.957 25 H 0.054 0.946 26 H 0.047 0.953 27 H 0.031 0.969 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.258 0.742 31 H 0.137 0.863 32 H 0.159 0.841 33 H 0.164 0.836 34 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.837 -9.988 -5.696 11.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.137 4.137 3 C -0.094 4.094 4 H 0.078 0.922 5 C -0.190 4.190 6 C 0.078 3.922 7 H 0.016 0.984 8 C -0.540 4.540 9 H 0.083 0.917 10 C -0.173 4.173 11 N -0.556 5.556 12 Si 0.757 3.243 13 H -0.184 1.184 14 H -0.218 1.218 15 H -0.201 1.201 16 C 0.013 3.987 17 C -0.195 4.195 18 C -0.111 4.111 19 C -0.207 4.207 20 C -0.082 4.082 21 N -0.237 5.237 22 H 0.045 0.955 23 H 0.098 0.902 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.154 0.846 32 H 0.176 0.824 33 H 0.182 0.818 34 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 3.306 -9.170 -5.222 11.058 hybrid contribution -1.378 0.094 0.017 1.381 sum 1.928 -9.075 -5.205 10.638 Atomic orbital electron populations 1.22007 0.95780 0.98534 1.03426 1.21438 0.96615 0.95726 0.99934 1.20983 0.93585 0.95850 0.98957 0.92218 1.21762 0.97123 0.99898 1.00183 1.17622 0.94511 0.91614 0.88410 0.98352 1.21199 0.91818 1.25540 1.15473 0.91694 1.25460 1.01293 0.94986 0.95540 1.70064 1.36554 1.26249 1.22740 0.86018 0.82217 0.78522 0.77523 1.18355 1.21816 1.20136 1.21739 0.88726 0.93434 0.94792 1.22256 1.01940 0.96879 0.98397 1.21959 0.96086 0.98703 0.94371 1.22331 0.95779 0.99802 1.02757 1.23215 1.00566 0.92126 0.92312 1.67574 1.14396 1.29901 1.11835 0.95534 0.90191 0.93792 0.92712 0.93459 0.95012 0.92921 0.93600 0.93256 0.84555 0.82352 0.81819 0.81197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.64 8.28 71.98 0.60 -5.04 16 2 C -0.10 -4.00 4.88 30.59 0.15 -3.85 16 3 C -0.07 -3.46 2.23 -10.80 -0.02 -3.48 16 4 H 0.06 3.18 6.49 -2.39 -0.02 3.16 16 5 C -0.13 -5.59 9.08 71.98 0.65 -4.94 16 6 C 0.10 4.92 1.78 -12.28 -0.02 4.90 16 7 H 0.00 -0.10 8.12 -2.38 -0.02 -0.12 16 8 C -0.50 -25.88 4.81 25.60 0.12 -25.76 16 9 H 0.07 3.23 5.67 -2.91 -0.02 3.21 16 10 C 0.03 1.39 4.68 84.65 0.40 1.79 16 11 N -0.92 -52.37 11.95 21.44 0.26 -52.11 16 12 Si 0.93 42.02 29.54 68.60 2.03 44.04 16 13 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 14 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 15 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 16 C 0.15 6.53 4.47 42.55 0.19 6.72 16 17 C -0.18 -6.55 6.58 22.36 0.15 -6.40 16 18 C -0.09 -2.46 10.18 22.47 0.23 -2.23 16 19 C -0.19 -4.93 10.11 22.36 0.23 -4.70 16 20 C 0.07 2.37 11.18 84.67 0.95 3.31 16 21 N -0.53 -21.95 9.44 -183.88 -1.74 -23.69 16 22 H 0.03 1.15 7.77 -2.38 -0.02 1.13 16 23 H 0.08 3.38 3.43 -2.38 -0.01 3.37 16 24 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.05 2.12 5.33 -2.39 -0.01 2.10 16 26 H 0.05 1.73 8.12 -2.39 -0.02 1.71 16 27 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 28 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 29 H 0.04 1.90 6.67 -2.39 -0.02 1.88 16 30 H 0.26 14.26 8.31 -92.72 -0.77 13.49 16 31 H 0.14 5.16 4.63 -2.91 -0.01 5.14 16 32 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 33 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 34 H 0.17 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -61.07 263.66 5.24 -55.83 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 1.08 Total: 15.61 kcal Atomic # 6 Polarization: -43.30 SS G_CDS: 3.61 Total: -39.69 kcal Atomic # 7 Polarization: -74.32 SS G_CDS: -1.48 Total: -75.80 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -61.07 5.24 -55.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261139270.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.983 kcal (2) G-P(sol) polarization free energy of solvation -61.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds