Wall clock time and date at job start Mon Mar 30 2020 02:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46861 * 2 1 4 4 H 1.09000 * 109.46638 * 306.12771 * 3 2 1 5 5 C 1.52998 * 109.46740 * 186.13404 * 3 2 1 6 6 C 1.52994 * 109.47130 * 66.13152 * 3 2 1 7 7 H 1.09000 * 109.46952 * 172.21867 * 6 3 2 8 8 C 1.50698 * 109.47254 * 292.21465 * 6 3 2 9 9 H 1.08004 * 119.99339 * 114.11273 * 8 6 3 10 10 C 1.37873 * 120.00570 * 294.11509 * 8 6 3 11 11 N 1.31522 * 119.99558 * 2.49863 * 10 8 6 12 12 Si 1.86800 * 120.00253 * 182.49564 * 10 8 6 13 13 H 1.48496 * 109.47062 * 0.02562 * 12 10 8 14 14 H 1.48493 * 109.46932 * 120.00079 * 12 10 8 15 15 H 1.48507 * 109.46820 * 239.99743 * 12 10 8 16 16 C 1.50696 * 109.47221 * 52.21950 * 6 3 2 17 17 C 1.38227 * 119.62002 * 273.41401 * 16 6 3 18 18 C 1.38625 * 119.16546 * 179.97438 * 17 16 6 19 19 C 1.38678 * 118.41736 * 359.97438 * 18 17 16 20 20 C 1.38182 * 119.16377 * 0.02562 * 19 18 17 21 21 N 1.31859 * 119.61622 * 93.13697 * 16 6 3 22 22 H 1.09000 * 109.46689 * 173.00698 * 1 2 3 23 23 H 1.08998 * 109.47279 * 293.01384 * 1 2 3 24 24 H 1.09006 * 109.47025 * 53.01232 * 1 2 3 25 25 H 1.09004 * 109.47358 * 240.00102 * 2 1 3 26 26 H 1.08997 * 109.47228 * 119.99788 * 2 1 3 27 27 H 1.09002 * 109.47163 * 295.49474 * 5 3 2 28 28 H 1.09005 * 109.46947 * 175.50018 * 5 3 2 29 29 H 1.09002 * 109.47582 * 55.50350 * 5 3 2 30 30 H 0.96998 * 119.99381 * 180.02562 * 11 10 8 31 31 H 1.08007 * 120.41898 * 359.97438 * 17 16 6 32 32 H 1.07997 * 120.79311 * 180.02562 * 18 17 16 33 33 H 1.08005 * 120.41799 * 180.02562 * 19 18 17 34 34 H 1.07997 * 119.61621 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5898 1.9870 -0.8301 5 6 3.5622 1.4453 -0.1541 6 6 1.6596 2.1179 1.3191 7 1 2.1387 3.0952 1.3782 8 6 0.1636 2.2872 1.3837 9 1 -0.4096 1.7462 2.1221 10 6 -0.4734 3.1327 0.5003 11 7 0.2181 3.7536 -0.4303 12 14 -2.3185 3.3962 0.6252 13 1 -2.8589 2.5891 1.7485 14 1 -2.5977 4.8339 0.8701 15 1 -2.9655 2.9754 -0.6436 16 6 2.1187 1.2628 2.4719 17 6 1.3014 0.2512 2.9401 18 6 1.7333 -0.5300 4.0007 19 6 2.9772 -0.2636 4.5529 20 6 3.7391 0.7646 4.0318 21 7 3.2979 1.4848 3.0188 22 1 -0.3633 -1.0200 -0.1251 23 1 -0.3634 0.4018 0.9458 24 1 -0.3633 0.6183 -0.8209 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 4.0163 0.9708 0.7158 28 1 3.9174 2.4727 -0.2344 29 1 3.8373 0.8944 -1.0536 30 1 -0.2300 4.3487 -1.0515 31 1 0.3383 0.0716 2.4853 32 1 1.1162 -1.3276 4.3871 33 1 3.3458 -0.8524 5.3799 34 1 4.7087 0.9787 4.4565 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261139273.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:39 Heat of formation + Delta-G solvation = 8.794939 kcal Electronic energy + Delta-G solvation = -15463.250775 eV Core-core repulsion = 13167.141954 eV Total energy + Delta-G solvation = -2296.108821 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.19177 -38.06533 -34.11725 -33.28737 -32.20757 -30.94296 -28.93615 -25.67629 -24.16610 -23.93866 -22.70970 -20.27037 -18.42724 -17.58332 -16.85248 -16.39468 -16.13810 -15.77083 -14.68760 -14.58249 -14.20779 -13.97743 -13.86678 -13.48995 -13.14580 -12.90127 -12.70229 -12.44270 -12.33908 -12.08780 -11.79158 -11.37475 -11.34722 -11.11302 -10.78886 -10.50125 -10.27427 -9.96232 -9.46780 -8.03297 -6.05460 0.50535 0.63554 1.42232 1.46505 1.54452 2.46754 3.14646 3.30012 3.77985 4.19644 4.20903 4.37849 4.43516 4.48599 4.57039 4.58344 4.78780 4.91959 5.02691 5.04157 5.14014 5.17544 5.34821 5.36270 5.41781 5.49533 5.56402 5.69404 5.77001 5.88186 6.01136 6.06403 6.23089 6.39559 6.90777 7.43342 7.52753 9.04304 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.029311 B = 0.011392 C = 0.010308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.033700 B = 2457.349564 C = 2715.714040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 C -0.077 4.077 4 H 0.067 0.933 5 C -0.132 4.132 6 C 0.098 3.902 7 H -0.002 1.002 8 C -0.499 4.499 9 H 0.067 0.933 10 C 0.023 3.977 11 N -0.915 5.915 12 Si 0.936 3.064 13 H -0.261 1.261 14 H -0.290 1.290 15 H -0.282 1.282 16 C 0.149 3.851 17 C -0.176 4.176 18 C -0.086 4.086 19 C -0.187 4.187 20 C 0.075 3.925 21 N -0.527 5.527 22 H 0.042 0.958 23 H 0.085 0.915 24 H 0.025 0.975 25 H 0.045 0.955 26 H 0.051 0.949 27 H 0.045 0.955 28 H 0.030 0.970 29 H 0.050 0.950 30 H 0.258 0.742 31 H 0.138 0.862 32 H 0.158 0.842 33 H 0.164 0.836 34 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.478 -9.506 6.252 11.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.135 4.135 3 C -0.097 4.097 4 H 0.085 0.915 5 C -0.190 4.190 6 C 0.078 3.922 7 H 0.016 0.984 8 C -0.538 4.538 9 H 0.085 0.915 10 C -0.176 4.176 11 N -0.554 5.554 12 Si 0.762 3.238 13 H -0.184 1.184 14 H -0.216 1.216 15 H -0.208 1.208 16 C 0.013 3.987 17 C -0.196 4.196 18 C -0.111 4.111 19 C -0.207 4.207 20 C -0.082 4.082 21 N -0.237 5.237 22 H 0.061 0.939 23 H 0.103 0.897 24 H 0.045 0.955 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.155 0.845 32 H 0.176 0.824 33 H 0.182 0.818 34 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.980 -8.717 5.784 10.877 hybrid contribution -1.351 0.157 -0.045 1.361 sum 1.629 -8.560 5.739 10.434 Atomic orbital electron populations 1.22067 0.95760 0.98575 1.03667 1.21406 0.96706 0.95793 0.99639 1.21023 0.93346 0.95764 0.99537 0.91474 1.21760 0.97236 0.99822 1.00133 1.17635 0.94766 0.91588 0.88184 0.98398 1.21273 0.91709 1.24926 1.15854 0.91527 1.25473 1.01128 0.95792 0.95210 1.70053 1.36689 1.30141 1.18559 0.85833 0.82045 0.77642 0.78259 1.18437 1.21604 1.20795 1.21744 0.88594 0.93471 0.94876 1.22297 1.01898 0.96987 0.98407 1.21955 0.96427 0.98532 0.94218 1.22331 0.95635 0.99995 1.02731 1.23215 1.00551 0.92214 0.92238 1.67574 1.15841 1.29142 1.11116 0.93870 0.89714 0.95535 0.93668 0.93051 0.93640 0.95042 0.93080 0.93279 0.84486 0.82394 0.81833 0.81189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.80 8.26 71.98 0.59 -5.21 16 2 C -0.10 -3.97 4.88 30.60 0.15 -3.82 16 3 C -0.08 -3.61 2.25 -10.79 -0.02 -3.64 16 4 H 0.07 3.60 6.31 -2.39 -0.02 3.58 16 5 C -0.13 -5.63 9.08 71.98 0.65 -4.97 16 6 C 0.10 4.90 1.82 -12.29 -0.02 4.88 16 7 H 0.00 -0.13 8.13 -2.39 -0.02 -0.15 16 8 C -0.50 -25.64 4.84 25.60 0.12 -25.52 16 9 H 0.07 3.31 5.54 -2.91 -0.02 3.29 16 10 C 0.02 1.21 4.98 84.65 0.42 1.63 16 11 N -0.91 -51.82 11.65 21.45 0.25 -51.57 16 12 Si 0.94 42.17 29.54 68.60 2.03 44.20 16 13 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 14 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 16 C 0.15 6.53 4.47 42.55 0.19 6.72 16 17 C -0.18 -6.61 6.65 22.36 0.15 -6.46 16 18 C -0.09 -2.48 10.18 22.47 0.23 -2.25 16 19 C -0.19 -4.94 10.11 22.36 0.23 -4.72 16 20 C 0.07 2.36 11.18 84.67 0.95 3.31 16 21 N -0.53 -21.89 9.39 -183.89 -1.73 -23.61 16 22 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.08 3.59 3.05 -2.39 -0.01 3.58 16 24 H 0.03 1.16 7.96 -2.38 -0.02 1.14 16 25 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 26 H 0.05 2.01 5.52 -2.39 -0.01 1.99 16 27 H 0.04 1.89 6.67 -2.39 -0.02 1.88 16 28 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 31 H 0.14 5.21 4.48 -2.91 -0.01 5.19 16 32 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 33 H 0.16 2.88 8.06 -2.91 -0.02 2.85 16 34 H 0.17 4.17 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -60.63 263.31 5.27 -55.36 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 1.08 Total: 15.68 kcal Atomic # 6 Polarization: -43.69 SS G_CDS: 3.64 Total: -40.05 kcal Atomic # 7 Polarization: -73.71 SS G_CDS: -1.48 Total: -75.19 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -60.63 5.27 -55.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261139273.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.158 kcal (2) G-P(sol) polarization free energy of solvation -60.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds