Wall clock time and date at job start Mon Mar 30 2020 02:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00236 * 2 1 4 4 H 1.48503 * 109.47331 * 264.61518 * 3 2 1 5 5 H 1.48501 * 109.47039 * 24.61346 * 3 2 1 6 6 H 1.48496 * 109.47180 * 144.61347 * 3 2 1 7 7 C 1.37880 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00110 * 4.78849 * 7 2 1 9 9 C 1.50697 * 119.99870 * 184.78278 * 7 2 1 10 10 H 1.09000 * 109.47028 * 4.91078 * 9 7 2 11 11 C 1.50703 * 109.46851 * 124.91398 * 9 7 2 12 12 C 1.34515 * 125.78640 * 239.99451 * 11 9 7 13 13 C 1.41386 * 106.83735 * 180.02562 * 12 11 9 14 14 C 1.34512 * 106.84180 * 0.02562 * 13 12 11 15 15 O 1.34299 * 108.42171 * 359.97438 * 14 13 12 16 16 C 1.52998 * 109.47115 * 244.91298 * 9 7 2 17 17 F 1.39908 * 109.47303 * 295.18328 * 16 9 7 18 18 F 1.39898 * 109.47435 * 55.18156 * 16 9 7 19 19 F 1.39899 * 109.47241 * 175.18776 * 16 9 7 20 20 H 0.97004 * 119.99567 * 0.02562 * 1 2 3 21 21 H 1.08002 * 126.57958 * 0.29401 * 12 11 9 22 22 H 1.07998 * 126.57386 * 180.02562 * 13 12 11 23 23 H 1.07996 * 125.78387 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6106 1.9807 -1.3939 5 1 1.3944 2.6828 0.5831 6 1 3.4852 1.4756 0.8107 7 6 2.0045 -1.1941 0.0005 8 1 1.4673 -2.1278 -0.0771 9 6 3.5076 -1.1964 0.1094 10 1 3.8621 -0.1775 0.2655 11 6 3.9256 -2.0577 1.2732 12 6 4.6274 -1.6460 2.3444 13 6 4.7954 -2.7728 3.1817 14 6 4.1867 -3.8057 2.5718 15 8 3.6615 -3.3667 1.4163 16 6 4.1115 -1.7543 -1.1809 17 9 3.7452 -3.0969 -1.3248 18 9 3.6357 -1.0216 -2.2735 19 9 5.5058 -1.6550 -1.1243 20 1 -0.4850 0.8401 -0.0004 21 1 4.9889 -0.6456 2.5312 22 1 5.3130 -2.7990 4.1291 23 1 4.1294 -4.8164 2.9480 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261139633.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:05 Heat of formation + Delta-G solvation = -163.419817 kcal Electronic energy + Delta-G solvation = -15430.271179 eV Core-core repulsion = 12215.452974 eV Total energy + Delta-G solvation = -3214.818205 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.045 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -50.86924 -48.38230 -48.33619 -43.32427 -36.09421 -33.94461 -33.33359 -29.16405 -26.83097 -23.85424 -22.59987 -21.32197 -19.84438 -19.34625 -18.74233 -18.51118 -17.72010 -16.61968 -16.33313 -15.41752 -15.31003 -14.95576 -14.79589 -14.57043 -14.56681 -14.53386 -14.30576 -13.59309 -13.40490 -13.06789 -12.71820 -12.53745 -11.94334 -11.70858 -10.95340 -10.71817 -9.28497 -8.51480 -6.67685 0.88885 1.28099 1.35687 1.39641 1.78176 2.08327 2.19177 2.23240 2.82603 3.20584 3.39472 3.50002 4.11172 4.22262 4.29244 4.43318 4.93329 5.04841 5.11012 5.29629 5.74328 5.96999 6.38240 6.44348 7.00033 8.63107 Molecular weight = 220.05amu Principal moments of inertia in cm(-1) A = 0.026183 B = 0.015274 C = 0.012401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.145146 B = 1832.748001 C = 2257.311352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.040 3.960 3 Si 0.924 3.076 4 H -0.254 1.254 5 H -0.268 1.268 6 H -0.230 1.230 7 C -0.530 4.530 8 H 0.044 0.956 9 C 0.048 3.952 10 H 0.118 0.882 11 C -0.010 4.010 12 C -0.226 4.226 13 C -0.214 4.214 14 C -0.059 4.059 15 O -0.191 6.191 16 C 0.438 3.562 17 F -0.191 7.191 18 F -0.187 7.187 19 F -0.194 7.194 20 H 0.279 0.721 21 H 0.160 0.840 22 H 0.180 0.820 23 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.274 -1.322 3.928 11.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.164 4.164 3 Si 0.745 3.255 4 H -0.178 1.178 5 H -0.193 1.193 6 H -0.154 1.154 7 C -0.566 4.566 8 H 0.062 0.938 9 C 0.028 3.972 10 H 0.135 0.865 11 C -0.061 4.061 12 C -0.245 4.245 13 C -0.233 4.233 14 C -0.126 4.126 15 O -0.087 6.087 16 C 0.384 3.616 17 F -0.173 7.173 18 F -0.168 7.168 19 F -0.175 7.175 20 H 0.089 0.911 21 H 0.177 0.823 22 H 0.198 0.802 23 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 9.923 -1.401 3.680 10.676 hybrid contribution -0.105 0.464 -0.289 0.557 sum 9.818 -0.937 3.391 10.429 Atomic orbital electron populations 1.69976 1.08248 1.29458 1.47209 1.25977 0.95704 1.02942 0.91748 0.86059 0.80220 0.78359 0.80832 1.17805 1.19285 1.15400 1.20533 0.87826 0.94747 1.53536 0.93786 1.19064 0.97436 0.96323 0.84370 0.86507 1.22456 1.00718 0.82431 1.00493 1.21845 1.05169 1.01901 0.95559 1.22096 1.06318 0.91805 1.03063 1.24889 1.00090 1.02094 0.85513 1.84057 1.61966 1.24254 1.38444 1.21797 0.74988 0.75920 0.88928 1.93082 1.91574 1.36111 1.96530 1.93082 1.88420 1.77409 1.57893 1.93096 1.31629 1.95986 1.96802 0.91129 0.82275 0.80249 0.74595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.72 13.96 21.45 0.30 -53.42 14 2 C 0.04 2.18 5.47 84.65 0.46 2.64 14 3 Si 0.92 39.57 27.38 68.60 1.88 41.45 14 4 H -0.25 -10.55 7.11 99.48 0.71 -9.84 14 5 H -0.27 -11.06 7.11 99.48 0.71 -10.35 14 6 H -0.23 -8.71 6.21 99.48 0.62 -8.10 14 7 C -0.53 -29.56 8.30 25.60 0.21 -29.35 14 8 H 0.04 2.80 8.06 -2.91 -0.02 2.78 14 9 C 0.05 2.25 2.11 -12.29 -0.03 2.22 14 10 H 0.12 5.06 4.44 -2.39 -0.01 5.05 14 11 C -0.01 -0.45 5.51 24.83 0.14 -0.31 14 12 C -0.23 -8.23 10.78 22.19 0.24 -7.99 14 13 C -0.21 -6.44 10.91 22.19 0.24 -6.20 14 14 C -0.06 -1.86 12.09 66.97 0.81 -1.05 14 15 O -0.19 -8.17 9.92 -2.45 -0.02 -8.19 14 16 C 0.44 19.81 2.69 71.98 0.19 20.01 14 17 F -0.19 -9.04 16.15 44.97 0.73 -8.31 14 18 F -0.19 -8.60 16.90 44.97 0.76 -7.84 14 19 F -0.19 -7.82 17.14 44.97 0.77 -7.05 14 20 H 0.28 15.05 8.31 -92.71 -0.77 14.28 14 21 H 0.16 5.05 8.06 -2.91 -0.02 5.02 14 22 H 0.18 3.87 8.06 -2.91 -0.02 3.85 14 23 H 0.24 4.91 8.06 -2.91 -0.02 4.89 14 Total: -1.00 -63.67 224.70 7.84 -55.84 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: 1.16 Total: 7.58 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: 2.27 Total: -20.05 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: 0.30 Total: -53.42 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -0.02 Total: -8.19 kcal Atomic # 9 Polarization: -25.46 SS G_CDS: 2.26 Total: -23.21 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 1.88 Total: 41.45 kcal Total: -63.67 7.84 -55.84 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261139633.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.585 kcal (2) G-P(sol) polarization free energy of solvation -63.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds