Wall clock time and date at job start Mon Mar 30 2020 02:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99766 * 2 1 4 4 H 1.48512 * 109.47178 * 95.17904 * 3 2 1 5 5 H 1.48505 * 109.47313 * 335.18300 * 3 2 1 6 6 H 1.48501 * 109.47344 * 215.17716 * 3 2 1 7 7 C 1.37875 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00460 * 6.13334 * 7 2 1 9 9 C 1.50701 * 119.99498 * 186.12735 * 7 2 1 10 10 H 1.08998 * 109.47834 * 4.95815 * 9 7 2 11 11 C 1.50706 * 109.47315 * 244.95443 * 9 7 2 12 12 C 1.34510 * 125.78964 * 119.71365 * 11 9 7 13 13 C 1.41379 * 106.83970 * 179.89142 * 12 11 9 14 14 C 1.34504 * 106.84165 * 0.37870 * 13 12 11 15 15 O 1.34300 * 125.78839 * 300.03232 * 11 9 7 16 16 C 1.52998 * 109.46950 * 124.96109 * 9 7 2 17 17 F 1.39899 * 109.47763 * 57.43055 * 16 9 7 18 18 F 1.39904 * 109.47412 * 177.43467 * 16 9 7 19 19 F 1.39903 * 109.46989 * 297.42869 * 16 9 7 20 20 H 0.97001 * 120.00311 * 0.02562 * 1 2 3 21 21 H 1.08002 * 126.57836 * 0.03406 * 12 11 9 22 22 H 1.07999 * 126.57658 * 180.16791 * 13 12 11 23 23 H 1.08004 * 125.79191 * 179.74799 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6061 1.9833 1.3945 5 1 1.3960 2.6818 -0.5877 6 1 3.4877 1.4743 -0.8066 7 6 2.0045 -1.1940 0.0005 8 1 1.4693 -2.1267 -0.0990 9 6 3.5051 -1.1976 0.1398 10 1 3.8562 -0.1808 0.3159 11 6 4.1259 -1.7313 -1.1255 12 6 4.9772 -1.0650 -1.9258 13 6 5.3081 -1.9370 -2.9882 14 6 4.6326 -3.0811 -2.7782 15 8 3.9182 -2.9508 -1.6484 16 6 3.9057 -2.0868 1.3187 17 9 3.4049 -3.3779 1.1204 18 9 5.3007 -2.1369 1.4122 19 9 3.3779 -1.5585 2.5018 20 1 -0.4851 0.8400 -0.0004 21 1 5.3403 -0.0579 -1.7828 22 1 5.9727 -1.7241 -3.8124 23 1 4.6599 -3.9560 -3.4108 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261139635.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:07 Heat of formation + Delta-G solvation = -164.760630 kcal Electronic energy + Delta-G solvation = -15422.793971 eV Core-core repulsion = 12207.917624 eV Total energy + Delta-G solvation = -3214.876347 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.045 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -50.88639 -48.39889 -48.35308 -43.32507 -36.10343 -33.94534 -33.33514 -29.14605 -26.87431 -23.83964 -22.60313 -21.33710 -19.84791 -19.35675 -18.67864 -18.58062 -17.70426 -16.62454 -16.30506 -15.45487 -15.31499 -14.94744 -14.80046 -14.60005 -14.57025 -14.52511 -14.26304 -13.61060 -13.44040 -13.02717 -12.72235 -12.56375 -11.91393 -11.82870 -10.94961 -10.71978 -9.28200 -8.51094 -6.66791 0.89487 1.31446 1.33423 1.41699 1.77786 2.06445 2.20408 2.22344 2.82463 3.17087 3.36901 3.49018 4.11034 4.21241 4.28391 4.40992 4.93175 5.04212 5.10548 5.29365 5.74215 5.96367 6.38340 6.44675 7.00481 8.63386 Molecular weight = 220.05amu Principal moments of inertia in cm(-1) A = 0.024302 B = 0.016150 C = 0.012482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.870584 B = 1733.377834 C = 2242.662623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.038 3.962 3 Si 0.925 3.075 4 H -0.251 1.251 5 H -0.271 1.271 6 H -0.234 1.234 7 C -0.533 4.533 8 H 0.046 0.954 9 C 0.054 3.946 10 H 0.112 0.888 11 C -0.011 4.011 12 C -0.228 4.228 13 C -0.214 4.214 14 C -0.059 4.059 15 O -0.191 6.191 16 C 0.445 3.555 17 F -0.190 7.190 18 F -0.192 7.192 19 F -0.187 7.187 20 H 0.279 0.721 21 H 0.157 0.843 22 H 0.180 0.820 23 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.880 -0.499 -3.185 11.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.165 4.165 3 Si 0.745 3.255 4 H -0.175 1.175 5 H -0.196 1.196 6 H -0.157 1.157 7 C -0.569 4.569 8 H 0.064 0.936 9 C 0.034 3.966 10 H 0.130 0.870 11 C -0.062 4.062 12 C -0.247 4.247 13 C -0.233 4.233 14 C -0.125 4.125 15 O -0.087 6.087 16 C 0.390 3.610 17 F -0.172 7.172 18 F -0.173 7.173 19 F -0.168 7.168 20 H 0.088 0.912 21 H 0.175 0.825 22 H 0.197 0.803 23 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 10.501 -0.635 -3.023 10.946 hybrid contribution -0.149 0.449 0.185 0.507 sum 10.352 -0.186 -2.838 10.736 Atomic orbital electron populations 1.69980 1.08277 1.29453 1.47198 1.25977 0.95704 1.03026 0.91811 0.86037 0.80330 0.78199 0.80886 1.17460 1.19604 1.15666 1.20538 0.87782 0.95007 1.53576 0.93577 1.18858 0.97569 0.95693 0.84433 0.87043 1.22600 0.99355 0.84735 0.99484 1.21829 1.02684 1.02469 0.97758 1.22085 1.05573 0.93737 1.01878 1.24883 0.96149 1.02695 0.88811 1.84052 1.56850 1.32984 1.34832 1.21483 0.73342 0.80402 0.85723 1.93082 1.87588 1.41352 1.95183 1.93103 1.30815 1.96639 1.96785 1.93093 1.86680 1.86388 1.50644 0.91168 0.82541 0.80297 0.74563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.78 13.96 21.45 0.30 -53.48 14 2 C 0.04 2.09 5.47 84.65 0.46 2.55 14 3 Si 0.93 39.46 26.91 68.60 1.85 41.31 14 4 H -0.25 -10.14 7.11 99.48 0.71 -9.43 14 5 H -0.27 -11.26 7.11 99.48 0.71 -10.56 14 6 H -0.23 -8.96 6.85 99.48 0.68 -8.28 14 7 C -0.53 -29.66 8.33 25.60 0.21 -29.45 14 8 H 0.05 2.93 8.00 -2.91 -0.02 2.90 14 9 C 0.05 2.55 2.10 -12.28 -0.03 2.52 14 10 H 0.11 4.80 4.82 -2.39 -0.01 4.79 14 11 C -0.01 -0.48 5.39 24.83 0.13 -0.34 14 12 C -0.23 -8.36 10.78 22.19 0.24 -8.12 14 13 C -0.21 -6.44 10.91 22.19 0.24 -6.20 14 14 C -0.06 -1.84 12.09 66.96 0.81 -1.03 14 15 O -0.19 -8.13 10.19 -2.46 -0.03 -8.15 14 16 C 0.44 20.06 2.68 71.98 0.19 20.25 14 17 F -0.19 -9.04 16.30 44.97 0.73 -8.31 14 18 F -0.19 -7.74 16.96 44.97 0.76 -6.98 14 19 F -0.19 -8.50 17.09 44.97 0.77 -7.73 14 20 H 0.28 15.06 8.31 -92.71 -0.77 14.29 14 21 H 0.16 5.06 8.06 -2.91 -0.02 5.03 14 22 H 0.18 3.87 8.06 -2.91 -0.02 3.85 14 23 H 0.24 4.87 8.06 -2.91 -0.02 4.85 14 Total: -1.00 -63.59 225.52 7.87 -55.72 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 1.22 Total: 7.45 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: 2.27 Total: -19.82 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.30 Total: -53.48 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -0.03 Total: -8.15 kcal Atomic # 9 Polarization: -25.29 SS G_CDS: 2.26 Total: -23.02 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 1.85 Total: 41.31 kcal Total: -63.59 7.87 -55.72 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261139635.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.039 kcal (2) G-P(sol) polarization free energy of solvation -63.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds