Wall clock time and date at job start Mon Mar 30 2020 02:52:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86792 * 120.00011 * 2 1
4 4 H 1.48502 * 109.47105 * 240.00128 * 3 2 1
5 5 H 1.48504 * 109.47481 * 359.97438 * 3 2 1
6 6 H 1.48498 * 109.47356 * 120.00010 * 3 2 1
7 7 C 1.37877 * 119.99576 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99585 * 179.97438 * 7 2 1
9 9 C 1.50694 * 120.00282 * 359.97438 * 7 2 1
10 10 C 1.53004 * 109.47323 * 180.02562 * 9 7 2
11 11 O 1.42903 * 109.63642 * 300.70157 * 10 9 7
12 12 C 1.53870 * 109.64552 * 61.12597 * 10 9 7
13 13 C 1.54740 * 106.77713 * 166.99813 * 12 10 9
14 14 S 1.83291 * 102.51874 * 317.52042 * 13 12 10
15 15 O 1.42098 * 109.35082 * 269.81855 * 14 13 12
16 16 O 1.42096 * 109.47551 * 136.64904 * 14 13 12
17 17 C 1.54159 * 109.64770 * 180.27649 * 10 9 7
18 18 H 0.97002 * 119.99988 * 359.97438 * 1 2 3
19 19 H 1.09003 * 109.47412 * 60.00361 * 9 7 2
20 20 H 1.08995 * 109.47531 * 300.00188 * 9 7 2
21 21 H 0.96700 * 114.00311 * 59.30016 * 11 10 9
22 22 H 1.08997 * 110.03260 * 286.19174 * 12 10 9
23 23 H 1.08999 * 110.02942 * 47.61573 * 12 10 9
24 24 H 1.09003 * 110.81402 * 199.26434 * 13 12 10
25 25 H 1.09006 * 110.81902 * 75.77086 * 13 12 10
26 26 H 1.09005 * 110.31860 * 331.26309 * 17 10 9
27 27 H 1.08992 * 110.32817 * 93.36559 * 17 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.1029 1.6963 -1.2125
5 1 1.2842 2.7465 -0.0006
6 1 3.1029 1.6964 1.2125
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2510 -2.4991 -0.0005
10 6 2.2452 -3.6621 -0.0005
11 8 3.0795 -3.5806 -1.1578
12 6 3.1132 -3.6007 1.2684
13 6 3.8486 -4.9581 1.3728
14 16 2.5324 -6.1574 0.9383
15 8 1.8508 -6.5569 2.1194
16 8 3.0592 -7.1408 0.0581
17 6 1.4784 -4.9995 -0.0075
18 1 -0.4850 0.8401 0.0004
19 1 0.6240 -2.5567 -0.8903
20 1 0.6246 -2.5571 0.8896
21 1 3.5885 -2.7607 -1.2189
22 1 3.8389 -2.7916 1.1856
23 1 2.4831 -3.4491 2.1448
24 1 4.2066 -5.1277 2.3883
25 1 4.6701 -5.0097 0.6582
26 1 0.5108 -4.8836 0.4808
27 1 1.3459 -5.3546 -1.0294
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261156935.mol2 27
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:52:05
Heat of formation + Delta-G solvation = -131.624697 kcal
Electronic energy + Delta-G solvation = -13674.647418 eV
Core-core repulsion = 11138.508645 eV
Total energy + Delta-G solvation = -2536.138773 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 220.060 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-38.22494 -36.75608 -35.74967 -33.10998 -32.85209 -30.03780 -28.08786 -24.26190
-22.87764 -19.99614 -18.60836 -16.89020 -16.54729 -16.02627 -15.69523 -15.33697
-14.57866 -14.02525 -13.81342 -12.92969 -12.74499 -12.42430 -12.07070 -11.85310
-11.77328 -11.71449 -11.24407 -11.14993 -10.86864 -10.60751 -10.49682 -10.19878
-10.08481 -9.25503 -8.95843 -8.57501 -6.21379 -4.27299 0.35410 2.79180
3.19957 3.26334 3.26834 3.83545 4.25011 4.27507 4.62224 4.85838
5.00030 5.11419 5.20246 5.23882 5.69636 5.74133 5.98480 6.22910
6.41986 6.44716 7.29155 7.43623 7.71191 8.07890 8.29635 8.76358
9.38411 10.89388
Molecular weight = 220.06amu
Principal moments of inertia in cm(-1)
A = 0.058884 B = 0.008152 C = 0.007972
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 475.400741 B = 3433.843556 C = 3511.334259
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.888 5.888
2 C 0.064 3.936
3 Si 0.894 3.106
4 H -0.275 1.275
5 H -0.286 1.286
6 H -0.276 1.276
7 C -0.534 4.534
8 H 0.058 0.942
9 C 0.007 3.993
10 C 0.145 3.855
11 O -0.564 6.564
12 C -0.133 4.133
13 C -0.581 4.581
14 S 2.379 3.621
15 O -0.949 6.949
16 O -0.950 6.950
17 C -0.572 4.572
18 H 0.265 0.735
19 H 0.033 0.967
20 H 0.030 0.970
21 H 0.388 0.612
22 H 0.102 0.898
23 H 0.093 0.907
24 H 0.129 0.871
25 H 0.135 0.865
26 H 0.144 0.856
27 H 0.143 0.857
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.600 -6.224 1.903 8.586
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.525 5.525
2 C -0.140 4.140
3 Si 0.722 3.278
4 H -0.201 1.201
5 H -0.212 1.212
6 H -0.201 1.201
7 C -0.572 4.572
8 H 0.076 0.924
9 C -0.031 4.031
10 C 0.103 3.897
11 O -0.373 6.373
12 C -0.172 4.172
13 C -0.712 4.712
14 S 2.565 3.435
15 O -0.947 6.947
16 O -0.947 6.947
17 C -0.702 4.702
18 H 0.074 0.926
19 H 0.051 0.949
20 H 0.049 0.951
21 H 0.238 0.762
22 H 0.121 0.879
23 H 0.111 0.889
24 H 0.147 0.853
25 H 0.153 0.847
26 H 0.162 0.838
27 H 0.161 0.839
Dipole moment (debyes) X Y Z Total
from point charges 5.072 -7.696 2.007 9.433
hybrid contribution 0.693 2.399 -0.068 2.498
sum 5.765 -5.297 1.939 8.065
Atomic orbital electron populations
1.69937 1.06153 1.27209 1.49244 1.24985 0.94846 0.99381 0.94738
0.86621 0.79592 0.82921 0.78680 1.20079 1.21196 1.20146 1.21003
0.92732 0.90711 1.52727 0.92408 1.19712 0.93873 0.90610 0.98863
1.21516 0.90371 0.93616 0.84182 1.86285 1.61295 1.45194 1.44527
1.22819 0.99478 0.94867 0.99988 1.30481 1.15724 1.13922 1.11056
1.09236 0.79550 0.78165 0.76505 1.93580 1.72865 1.81445 1.46773
1.93561 1.78644 1.56506 1.66010 1.30508 1.13065 1.11344 1.15291
0.92578 0.94917 0.95144 0.76193 0.87904 0.88860 0.85259 0.84712
0.83794 0.83904
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -24.76 13.29 55.43 0.74 -24.02 15
2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15
3 Si 0.89 19.85 29.54 -169.99 -5.02 14.83 15
4 H -0.28 -6.01 7.11 56.52 0.40 -5.61 15
5 H -0.29 -6.44 7.11 56.52 0.40 -6.03 15
6 H -0.28 -6.01 7.11 56.52 0.40 -5.60 15
7 C -0.53 -13.06 7.93 -34.44 -0.27 -13.34 15
8 H 0.06 1.30 6.07 -52.49 -0.32 0.98 15
9 C 0.01 0.17 4.11 -27.88 -0.11 0.06 15
10 C 0.15 2.59 0.83 -89.56 -0.07 2.52 15
11 O -0.56 -10.07 12.83 -35.23 -0.45 -10.53 15
12 C -0.13 -2.04 4.92 -25.36 -0.12 -2.16 15
13 C -0.58 -7.38 7.19 38.07 0.27 -7.11 15
14 S 2.38 34.95 6.10 -107.50 -0.66 34.29 15
15 O -0.95 -16.36 18.15 -57.73 -1.05 -17.40 15
16 O -0.95 -16.67 18.15 -57.73 -1.05 -17.72 15
17 C -0.57 -8.88 6.46 37.76 0.24 -8.64 15
18 H 0.26 7.03 8.31 -40.82 -0.34 6.69 15
19 H 0.03 0.82 8.14 -51.93 -0.42 0.40 15
20 H 0.03 0.72 8.14 -51.93 -0.42 0.30 15
21 H 0.39 6.32 7.56 45.56 0.34 6.66 15
22 H 0.10 1.55 7.26 -51.93 -0.38 1.18 15
23 H 0.09 1.41 8.11 -51.93 -0.42 0.98 15
24 H 0.13 1.35 8.14 -51.93 -0.42 0.93 15
25 H 0.13 1.57 8.14 -51.93 -0.42 1.15 15
26 H 0.14 2.08 7.88 -51.93 -0.41 1.67 15
27 H 0.14 2.12 8.08 -51.93 -0.42 1.70 15
LS Contribution 242.10 15.07 3.65 3.65
Total: -1.00 -32.18 242.10 -6.43 -38.61
By element:
Atomic # 1 Polarization: 7.82 SS G_CDS: -2.43 Total: 5.39 kcal
Atomic # 6 Polarization: -26.95 SS G_CDS: -0.17 Total: -27.11 kcal
Atomic # 7 Polarization: -24.76 SS G_CDS: 0.74 Total: -24.02 kcal
Atomic # 8 Polarization: -43.10 SS G_CDS: -2.55 Total: -45.65 kcal
Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal
Atomic # 16 Polarization: 34.95 SS G_CDS: -0.66 Total: 34.29 kcal
Total LS contribution 3.65 Total: 3.65 kcal
Total: -32.18 -6.43 -38.61 kcal
The number of atoms in the molecule is 27
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261156935.mol2 27
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -93.013 kcal
(2) G-P(sol) polarization free energy of solvation -32.180 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.193 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.432 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.612 kcal
(6) G-S(sol) free energy of system = (1) + (5) -131.625 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds