Wall clock time and date at job start Mon Mar 30 2020 02:52:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86792 * 120.00011 * 2 1
4 4 H 1.48502 * 109.47105 * 240.00128 * 3 2 1
5 5 H 1.48504 * 109.47481 * 359.97438 * 3 2 1
6 6 H 1.48498 * 109.47356 * 120.00010 * 3 2 1
7 7 C 1.37877 * 119.99576 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99585 * 179.97438 * 7 2 1
9 9 C 1.50694 * 120.00282 * 359.97438 * 7 2 1
10 10 C 1.53004 * 109.47323 * 180.02562 * 9 7 2
11 11 O 1.42903 * 109.63642 * 300.70157 * 10 9 7
12 12 C 1.53870 * 109.64552 * 61.12597 * 10 9 7
13 13 C 1.54740 * 106.77713 * 166.99813 * 12 10 9
14 14 S 1.83291 * 102.51874 * 317.52042 * 13 12 10
15 15 O 1.42098 * 109.35082 * 269.81855 * 14 13 12
16 16 O 1.42096 * 109.47551 * 136.64904 * 14 13 12
17 17 C 1.54159 * 109.64770 * 180.27649 * 10 9 7
18 18 H 0.97002 * 119.99988 * 359.97438 * 1 2 3
19 19 H 1.09003 * 109.47412 * 60.00361 * 9 7 2
20 20 H 1.08995 * 109.47531 * 300.00188 * 9 7 2
21 21 H 0.96700 * 114.00311 * 59.30016 * 11 10 9
22 22 H 1.08997 * 110.03260 * 286.19174 * 12 10 9
23 23 H 1.08999 * 110.02942 * 47.61573 * 12 10 9
24 24 H 1.09003 * 110.81402 * 199.26434 * 13 12 10
25 25 H 1.09006 * 110.81902 * 75.77086 * 13 12 10
26 26 H 1.09005 * 110.31860 * 331.26309 * 17 10 9
27 27 H 1.08992 * 110.32817 * 93.36559 * 17 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.1029 1.6963 -1.2125
5 1 1.2842 2.7465 -0.0006
6 1 3.1029 1.6964 1.2125
7 6 2.0045 -1.1941 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2510 -2.4991 -0.0005
10 6 2.2452 -3.6621 -0.0005
11 8 3.0795 -3.5806 -1.1578
12 6 3.1132 -3.6007 1.2684
13 6 3.8486 -4.9581 1.3728
14 16 2.5324 -6.1574 0.9383
15 8 1.8508 -6.5569 2.1194
16 8 3.0592 -7.1408 0.0581
17 6 1.4784 -4.9995 -0.0075
18 1 -0.4850 0.8401 0.0004
19 1 0.6240 -2.5567 -0.8903
20 1 0.6246 -2.5571 0.8896
21 1 3.5885 -2.7607 -1.2189
22 1 3.8389 -2.7916 1.1856
23 1 2.4831 -3.4491 2.1448
24 1 4.2066 -5.1277 2.3883
25 1 4.6701 -5.0097 0.6582
26 1 0.5108 -4.8836 0.4808
27 1 1.3459 -5.3546 -1.0294
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261156935.mol2 27
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:52:04
Heat of formation + Delta-G solvation = -158.187028 kcal
Electronic energy + Delta-G solvation = -13675.799247 eV
Core-core repulsion = 11138.508645 eV
Total energy + Delta-G solvation = -2537.290602 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 220.060 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-39.64888 -38.05148 -37.04894 -34.91665 -34.27804 -31.44183 -29.72496 -25.82219
-24.38965 -21.45001 -19.83412 -18.58570 -17.94813 -17.44720 -17.03626 -16.64303
-16.26771 -15.45974 -15.13527 -14.34151 -14.28832 -13.75957 -13.63556 -13.19179
-13.12750 -13.07277 -12.89332 -12.70778 -12.40304 -12.21836 -12.03772 -11.72983
-11.45086 -10.90931 -10.55737 -10.48938 -8.18813 -6.29730 -0.84092 1.46328
1.47248 1.54170 1.61764 2.42348 2.63259 3.04337 3.17285 3.34760
3.66759 3.76919 3.86886 4.11095 4.47747 4.59388 4.77543 4.85439
5.09333 5.19183 5.41299 5.52761 5.79103 6.14873 6.83468 6.95091
7.40242 8.92955
Molecular weight = 220.06amu
Principal moments of inertia in cm(-1)
A = 0.058884 B = 0.008152 C = 0.007972
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 475.400741 B = 3433.843556 C = 3511.334259
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.934 5.934
2 C 0.003 3.997
3 Si 0.962 3.038
4 H -0.266 1.266
5 H -0.295 1.295
6 H -0.263 1.263
7 C -0.534 4.534
8 H 0.081 0.919
9 C 0.007 3.993
10 C 0.146 3.854
11 O -0.567 6.567
12 C -0.136 4.136
13 C -0.555 4.555
14 S 2.404 3.596
15 O -0.974 6.974
16 O -0.976 6.976
17 C -0.582 4.582
18 H 0.262 0.738
19 H -0.004 1.004
20 H 0.011 0.989
21 H 0.394 0.606
22 H 0.112 0.888
23 H 0.094 0.906
24 H 0.163 0.837
25 H 0.155 0.845
26 H 0.147 0.853
27 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.908 -6.162 2.512 10.335
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.574 5.574
2 C -0.196 4.196
3 Si 0.787 3.213
4 H -0.191 1.191
5 H -0.221 1.221
6 H -0.188 1.188
7 C -0.572 4.572
8 H 0.099 0.901
9 C -0.031 4.031
10 C 0.105 3.895
11 O -0.377 6.377
12 C -0.175 4.175
13 C -0.687 4.687
14 S 2.592 3.408
15 O -0.971 6.971
16 O -0.974 6.974
17 C -0.711 4.711
18 H 0.070 0.930
19 H 0.014 0.986
20 H 0.029 0.971
21 H 0.245 0.755
22 H 0.130 0.870
23 H 0.113 0.887
24 H 0.181 0.819
25 H 0.173 0.827
26 H 0.165 0.835
27 H 0.164 0.836
Dipole moment (debyes) X Y Z Total
from point charges 7.380 -7.655 2.602 10.947
hybrid contribution -0.033 2.367 -0.273 2.383
sum 7.347 -5.288 2.330 9.347
Atomic orbital electron populations
1.70095 1.08024 1.27780 1.51494 1.25912 0.95530 1.03284 0.94843
0.85547 0.78152 0.78310 0.79301 1.19093 1.22135 1.18812 1.21532
0.94024 0.91090 1.50532 0.90076 1.19627 0.94477 0.92785 0.96185
1.21383 0.89941 0.92518 0.85705 1.86291 1.61120 1.45546 1.44752
1.22776 0.99538 0.96772 0.98375 1.30371 1.14502 1.10106 1.13762
1.08474 0.79357 0.77742 0.75211 1.93545 1.74036 1.82197 1.47347
1.93524 1.78953 1.58082 1.66812 1.30570 1.13671 1.10769 1.16085
0.92963 0.98573 0.97072 0.75503 0.86990 0.88714 0.81865 0.82657
0.83538 0.83650
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -53.29 13.29 21.45 0.28 -53.01 15
2 C 0.00 0.14 5.46 84.65 0.46 0.60 15
3 Si 0.96 40.23 29.54 68.60 2.03 42.25 15
4 H -0.27 -10.64 7.11 99.48 0.71 -9.93 15
5 H -0.30 -12.67 7.11 99.48 0.71 -11.97 15
6 H -0.26 -10.41 7.11 99.48 0.71 -9.70 15
7 C -0.53 -25.76 7.93 25.60 0.20 -25.55 15
8 H 0.08 3.44 6.07 -2.91 -0.02 3.42 15
9 C 0.01 0.34 4.11 29.85 0.12 0.47 15
10 C 0.15 5.07 0.83 -10.11 -0.01 5.06 15
11 O -0.57 -19.27 12.83 -148.98 -1.91 -21.18 15
12 C -0.14 -3.77 4.92 31.48 0.15 -3.62 15
13 C -0.55 -11.83 7.19 72.58 0.52 -11.31 15
14 S 2.40 65.98 6.10 -56.49 -0.34 65.64 15
15 O -0.97 -32.01 18.15 -127.47 -2.31 -34.32 15
16 O -0.98 -32.53 18.15 -127.47 -2.31 -34.84 15
17 C -0.58 -17.76 6.46 72.37 0.47 -17.30 15
18 H 0.26 14.28 8.31 -92.71 -0.77 13.51 15
19 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 15
20 H 0.01 0.54 8.14 -2.39 -0.02 0.52 15
21 H 0.39 11.96 7.56 -74.06 -0.56 11.40 15
22 H 0.11 2.96 7.26 -2.39 -0.02 2.94 15
23 H 0.09 2.63 8.11 -2.39 -0.02 2.61 15
24 H 0.16 2.53 8.14 -2.39 -0.02 2.51 15
25 H 0.16 2.84 8.14 -2.38 -0.02 2.82 15
26 H 0.15 4.32 7.88 -2.38 -0.02 4.30 15
27 H 0.15 4.30 8.08 -2.39 -0.02 4.29 15
Total: -1.00 -68.60 242.10 -2.03 -70.63
By element:
Atomic # 1 Polarization: 15.86 SS G_CDS: 0.62 Total: 16.48 kcal
Atomic # 6 Polarization: -53.58 SS G_CDS: 1.92 Total: -51.65 kcal
Atomic # 7 Polarization: -53.29 SS G_CDS: 0.28 Total: -53.01 kcal
Atomic # 8 Polarization: -83.81 SS G_CDS: -6.54 Total: -90.34 kcal
Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.25 kcal
Atomic # 16 Polarization: 65.98 SS G_CDS: -0.34 Total: 65.64 kcal
Total: -68.60 -2.03 -70.63 kcal
The number of atoms in the molecule is 27
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261156935.mol2 27
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -87.559 kcal
(2) G-P(sol) polarization free energy of solvation -68.601 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.160 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.027 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.628 kcal
(6) G-S(sol) free energy of system = (1) + (5) -158.187 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds