Wall clock time and date at job start Mon Mar 30 2020 02:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30895 * 1 3 3 Si 1.86801 * 120.00243 * 2 1 4 4 H 1.48498 * 109.47153 * 269.99811 * 3 2 1 5 5 H 1.48503 * 109.47036 * 29.99976 * 3 2 1 6 6 H 1.48504 * 109.47052 * 149.99755 * 3 2 1 7 7 C 1.39857 * 119.99572 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99891 * 198.01916 * 7 2 1 9 9 C 1.41263 * 120.00277 * 18.02158 * 7 2 1 10 10 C 1.41098 * 119.97721 * 24.77936 * 9 7 2 11 11 C 1.35944 * 119.89322 * 179.97438 * 10 9 7 12 12 C 1.39902 * 120.68203 * 0.02562 * 11 10 9 13 13 S 1.76273 * 130.96219 * 180.02562 * 12 11 10 14 14 C 1.75768 * 90.50767 * 179.97438 * 13 12 11 15 15 N 1.37907 * 124.75441 * 179.97438 * 14 13 12 16 16 N 1.28816 * 110.48927 * 359.97438 * 14 13 12 17 17 C 1.34927 * 117.88480 * 0.02562 * 16 14 13 18 18 C 1.39946 * 119.97832 * 204.80135 * 9 7 2 19 19 H 0.97000 * 119.99795 * 0.02562 * 1 2 3 20 20 H 1.08000 * 120.05750 * 359.97438 * 10 9 7 21 21 H 1.07999 * 119.65754 * 179.97438 * 11 10 9 22 22 H 0.97004 * 120.00401 * 359.97260 * 15 14 13 23 23 H 0.97003 * 120.00035 * 179.97438 * 15 14 13 24 24 H 1.08003 * 119.95728 * 0.02562 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.4906 2.0464 -1.4001 5 1 1.4405 2.6527 0.7001 6 1 3.5406 1.4401 0.7001 7 6 2.0081 -1.2112 0.0005 8 1 3.0485 -1.2341 0.2899 9 6 1.3538 -2.4048 -0.3774 10 6 0.2270 -2.3530 -1.2251 11 6 -0.4011 -3.5027 -1.5882 12 6 0.0574 -4.7422 -1.1293 13 16 -0.5375 -6.3753 -1.4232 14 6 0.7355 -7.0384 -0.4086 15 7 0.9149 -8.3809 -0.1491 16 7 1.4774 -6.0946 0.0585 17 6 1.1751 -4.8254 -0.2854 18 6 1.8232 -3.6377 0.0896 19 1 -0.4850 0.8401 -0.0004 20 1 -0.1359 -1.4016 -1.5850 21 1 -1.2634 -3.4586 -2.2368 22 1 0.3131 -9.0348 -0.5380 23 1 1.6429 -8.6714 0.4223 24 1 2.6853 -3.6756 0.7390 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261175218.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:20 Heat of formation + Delta-G solvation = 41.526255 kcal Electronic energy + Delta-G solvation = -11933.764589 eV Core-core repulsion = 9744.735875 eV Total energy + Delta-G solvation = -2189.028714 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 220.037 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.77980 -36.39256 -34.07379 -32.59899 -29.95733 -27.81916 -25.40650 -22.83306 -21.11366 -20.25428 -18.18598 -16.91915 -16.21000 -15.69555 -14.90936 -14.30617 -13.89523 -13.73991 -13.14158 -12.45235 -12.14140 -11.64102 -11.24231 -11.17040 -10.73621 -10.46859 -10.23006 -9.53280 -9.47730 -9.12841 -8.73493 -8.65480 -7.14966 -6.92579 -6.75650 -4.47044 1.86867 1.91218 2.60704 2.79343 3.02981 3.07304 3.08640 3.72797 3.84708 3.92435 4.51115 5.54250 5.68006 6.04652 6.67879 6.74379 6.89714 7.06661 7.24794 7.32658 7.49926 7.65898 7.69141 7.89906 8.02046 8.43164 8.68605 8.77842 8.90441 10.05381 Molecular weight = 220.04amu Principal moments of inertia in cm(-1) A = 0.069402 B = 0.007338 C = 0.006758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.349001 B = 3814.605220 C = 4142.021017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.452 4.452 8 H 0.083 0.917 9 C 0.125 3.875 10 C -0.132 4.132 11 C -0.063 4.063 12 C -0.269 4.269 13 S -0.041 6.041 14 C 0.362 3.638 15 N -0.829 5.829 16 N -0.546 5.546 17 C 0.146 3.854 18 C -0.207 4.207 19 H 0.284 0.716 20 H 0.129 0.871 21 H 0.096 0.904 22 H 0.408 0.592 23 H 0.405 0.595 24 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.745 -6.749 -1.944 7.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.144 4.144 3 Si 0.738 3.262 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.481 4.481 8 H 0.102 0.898 9 C 0.121 3.879 10 C -0.154 4.154 11 C -0.085 4.085 12 C -0.387 4.387 13 S 0.201 5.799 14 C -0.018 4.018 15 N -0.382 5.382 16 N -0.271 5.271 17 C 0.031 3.969 18 C -0.231 4.231 19 H 0.095 0.905 20 H 0.147 0.853 21 H 0.114 0.886 22 H 0.238 0.762 23 H 0.237 0.763 24 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.313 -7.090 -2.143 7.522 hybrid contribution 0.682 0.986 0.384 1.259 sum -0.631 -6.104 -1.759 6.383 Atomic orbital electron populations 1.69842 1.07659 1.29671 1.34172 1.25974 0.94793 1.01622 0.91976 0.86214 0.80493 0.80057 0.79454 1.19106 1.20211 1.18437 1.19590 0.98466 0.90873 1.39210 0.89841 1.17374 0.90628 0.91692 0.88225 1.21102 0.98345 0.96485 0.99439 1.19617 0.98985 0.90024 0.99914 1.22552 1.06000 0.94252 1.15877 1.84074 1.36207 1.03347 1.56270 1.23451 0.93495 0.89499 0.95315 1.41255 1.37530 1.01334 1.58057 1.66178 1.31055 0.99727 1.30153 1.18467 0.93841 0.88750 0.95843 1.20379 1.05099 0.88947 1.08690 0.90530 0.85317 0.88624 0.76194 0.76337 0.87865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.61 10.97 55.54 0.61 -19.00 14 2 C 0.08 1.82 5.12 -17.35 -0.09 1.73 14 3 Si 0.91 18.00 29.60 -169.99 -5.03 12.97 14 4 H -0.27 -5.17 7.11 56.52 0.40 -4.77 14 5 H -0.28 -5.34 7.11 56.52 0.40 -4.94 14 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 14 7 C -0.45 -11.70 9.02 -37.83 -0.34 -12.04 14 8 H 0.08 2.08 7.91 -52.48 -0.41 1.66 14 9 C 0.13 3.33 5.55 -107.02 -0.59 2.74 14 10 C -0.13 -3.38 8.62 -39.32 -0.34 -3.72 14 11 C -0.06 -1.49 9.98 -39.78 -0.40 -1.89 14 12 C -0.27 -6.45 6.55 -38.19 -0.25 -6.70 14 13 S -0.04 -0.79 23.38 -107.50 -2.51 -3.30 14 14 C 0.36 6.90 8.72 -89.07 -0.78 6.12 14 15 N -0.83 -10.87 9.04 30.43 0.28 -10.60 14 16 N -0.55 -12.52 10.61 -11.23 -0.12 -12.64 14 17 C 0.15 3.68 6.92 -84.92 -0.59 3.09 14 18 C -0.21 -5.41 9.84 -38.13 -0.38 -5.79 14 19 H 0.28 6.37 8.30 -40.82 -0.34 6.03 14 20 H 0.13 3.28 6.16 -52.49 -0.32 2.96 14 21 H 0.10 2.03 8.06 -52.49 -0.42 1.61 14 22 H 0.41 3.98 8.95 -40.82 -0.37 3.62 14 23 H 0.41 4.65 8.95 -40.82 -0.37 4.28 14 24 H 0.10 2.62 8.06 -52.48 -0.42 2.20 14 LS Contribution 231.63 15.07 3.49 3.49 Total: -1.00 -29.10 231.63 -8.49 -37.59 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -1.45 Total: 7.96 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -3.75 Total: -16.46 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 0.76 Total: -42.24 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Atomic # 16 Polarization: -0.79 SS G_CDS: -2.51 Total: -3.30 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -29.10 -8.49 -37.59 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261175218.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.113 kcal (2) G-P(sol) polarization free energy of solvation -29.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds