Wall clock time and date at job start Mon Mar 30 2020 02:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36100 * 126.10939 * 2 1 4 4 C 1.39089 * 106.37119 * 179.97438 * 3 2 1 5 5 C 1.41228 * 126.43789 * 179.97438 * 4 3 2 6 6 H 1.08007 * 119.99776 * 354.31127 * 5 4 3 7 7 C 1.39710 * 119.99786 * 174.30812 * 5 4 3 8 8 N 1.31017 * 120.00186 * 6.02057 * 7 5 4 9 9 Si 1.86807 * 119.99821 * 186.01968 * 7 5 4 10 10 H 1.48492 * 109.47096 * 94.98195 * 9 7 5 11 11 H 1.48504 * 109.46746 * 214.98140 * 9 7 5 12 12 H 1.48495 * 109.46933 * 334.98042 * 9 7 5 13 13 N 1.35969 * 107.12197 * 0.02562 * 4 3 2 14 14 C 1.30152 * 109.13107 * 359.97438 * 13 4 3 15 15 C 1.50700 * 125.20117 * 180.02562 * 14 13 4 16 16 F 1.39897 * 109.47135 * 14.97547 * 15 14 13 17 17 F 1.39903 * 109.47168 * 134.98045 * 15 14 13 18 18 F 1.39907 * 109.46879 * 254.97597 * 15 14 13 19 19 H 1.09005 * 109.46704 * 90.02255 * 1 2 3 20 20 H 1.08997 * 109.46800 * 210.01884 * 1 2 3 21 21 H 1.08993 * 109.47222 * 330.02023 * 1 2 3 22 22 H 1.07999 * 126.80977 * 0.27097 * 3 2 1 23 23 H 0.97002 * 120.00105 * 180.02562 * 8 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2671 1.0995 0.0000 4 6 3.5763 0.6298 0.0006 5 6 4.7495 1.4159 0.0003 6 1 4.6800 2.4897 -0.0932 7 6 6.0000 0.8046 0.1210 8 7 6.0936 -0.5022 0.1157 9 14 7.5385 1.8506 0.2899 10 1 7.8724 2.0113 1.7278 11 1 8.6678 1.1863 -0.4094 12 1 7.2984 3.1854 -0.3147 13 7 3.5142 -0.7285 0.0004 14 6 2.2664 -1.0984 0.0002 15 6 1.7835 -2.5260 0.0005 16 9 2.8411 -3.3759 0.3417 17 9 0.7507 -2.6688 0.9333 18 9 1.3105 -2.8585 -1.2735 19 1 -0.3633 -0.0004 -1.0277 20 1 -0.3633 -0.8898 0.5141 21 1 -0.3633 0.8901 0.5135 22 1 1.9499 2.1319 0.0041 23 1 6.9617 -0.9266 0.1999 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261225306.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:37 Heat of formation + Delta-G solvation = -112.195623 kcal Electronic energy + Delta-G solvation = -15087.263589 eV Core-core repulsion = 11906.959383 eV Total energy + Delta-G solvation = -3180.304206 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.052 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -51.24048 -48.78718 -48.69981 -42.14373 -35.66685 -34.04427 -31.48465 -28.52574 -27.75870 -25.44526 -22.04913 -21.72347 -19.65075 -19.54478 -18.80183 -18.40236 -16.52156 -16.42387 -16.34309 -15.57023 -15.51493 -15.20124 -14.98528 -14.87736 -14.71898 -14.35393 -13.77506 -13.64763 -13.06371 -12.83530 -12.77232 -12.35202 -11.80551 -11.15275 -10.32684 -10.12246 -9.31372 -8.25834 -6.17484 1.08160 1.35680 1.45966 1.46750 1.60210 2.08990 2.35345 2.38302 2.66274 3.20605 3.32990 3.64781 4.05150 4.41248 4.42068 4.62464 5.04126 5.36210 5.58193 5.64237 6.27458 6.57593 6.97265 7.13161 7.72420 8.71239 Molecular weight = 220.05amu Principal moments of inertia in cm(-1) A = 0.042752 B = 0.009810 C = 0.008415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.781835 B = 2853.562290 C = 3326.578970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.435 5.435 3 C -0.157 4.157 4 C 0.144 3.856 5 C -0.489 4.489 6 H 0.090 0.910 7 C 0.023 3.977 8 N -0.819 5.819 9 Si 0.985 3.015 10 H -0.269 1.269 11 H -0.278 1.278 12 H -0.253 1.253 13 N -0.458 5.458 14 C 0.037 3.963 15 C 0.575 3.425 16 F -0.166 7.166 17 F -0.167 7.167 18 F -0.172 7.172 19 H 0.086 0.914 20 H 0.090 0.910 21 H 0.110 0.890 22 H 0.191 0.809 23 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.438 -0.048 0.212 9.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.123 5.123 3 C -0.289 4.289 4 C 0.018 3.982 5 C -0.524 4.524 6 H 0.108 0.892 7 C -0.191 4.191 8 N -0.446 5.446 9 Si 0.807 3.193 10 H -0.194 1.194 11 H -0.203 1.203 12 H -0.176 1.176 13 N -0.184 5.184 14 C -0.220 4.220 15 C 0.519 3.481 16 F -0.147 7.147 17 F -0.149 7.149 18 F -0.153 7.153 19 H 0.105 0.895 20 H 0.108 0.892 21 H 0.128 0.872 22 H 0.208 0.792 23 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.866 -0.833 0.215 8.908 hybrid contribution 0.008 0.465 0.055 0.468 sum -8.858 -0.368 0.270 8.870 Atomic orbital electron populations 1.22406 0.75022 1.06077 1.04585 1.44705 1.07823 1.04630 1.55166 1.23192 0.89960 0.91782 1.23933 1.19083 0.93132 0.87363 0.98619 1.18878 0.89481 0.94174 1.49861 0.89191 1.26744 1.03527 0.96112 0.92717 1.70233 1.25933 1.11238 1.37197 0.85159 0.76463 0.78936 0.78762 1.19438 1.20318 1.17649 1.70984 1.14208 1.14725 1.18504 1.22919 0.89485 0.89022 1.20574 1.16492 0.74450 0.83417 0.73769 1.93197 1.57410 1.72079 1.92060 1.93147 1.59447 1.96245 1.66017 1.93199 1.88604 1.93426 1.40088 0.89514 0.89173 0.87195 0.79208 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.59 10.92 127.77 1.39 2.99 14 2 N -0.43 -17.79 3.15 -533.72 -1.68 -19.47 14 3 C -0.16 -7.14 11.63 84.24 0.98 -6.16 14 4 C 0.14 8.09 6.68 39.44 0.26 8.36 14 5 C -0.49 -27.49 9.37 23.36 0.22 -27.27 14 6 H 0.09 4.65 7.85 -2.91 -0.02 4.62 14 7 C 0.02 1.28 5.49 85.17 0.47 1.75 14 8 N -0.82 -48.54 11.97 21.79 0.26 -48.28 14 9 Si 0.99 41.25 29.56 68.60 2.03 43.28 14 10 H -0.27 -10.94 7.11 99.48 0.71 -10.23 14 11 H -0.28 -11.37 7.11 99.48 0.71 -10.66 14 12 H -0.25 -9.93 7.11 99.48 0.71 -9.23 14 13 N -0.46 -26.48 9.31 -179.79 -1.67 -28.16 14 14 C 0.04 1.79 7.21 137.93 0.99 2.78 14 15 C 0.58 23.21 3.29 71.24 0.23 23.44 14 16 F -0.17 -7.33 17.14 44.97 0.77 -6.56 14 17 F -0.17 -5.67 15.27 44.97 0.69 -4.98 14 18 F -0.17 -6.37 17.30 44.97 0.78 -5.59 14 19 H 0.09 1.98 8.14 -2.38 -0.02 1.96 14 20 H 0.09 2.20 6.08 -2.39 -0.01 2.19 14 21 H 0.11 2.29 8.14 -2.39 -0.02 2.27 14 22 H 0.19 7.14 8.06 -2.91 -0.02 7.12 14 23 H 0.27 14.81 8.30 -92.71 -0.77 14.04 14 Total: -1.00 -68.76 226.18 6.98 -61.78 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: 1.25 Total: 2.08 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 4.55 Total: 5.89 kcal Atomic # 7 Polarization: -92.81 SS G_CDS: -3.09 Total: -95.90 kcal Atomic # 9 Polarization: -19.37 SS G_CDS: 2.24 Total: -17.13 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -68.76 6.98 -61.78 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261225306.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.415 kcal (2) G-P(sol) polarization free energy of solvation -68.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds