Wall clock time and date at job start Mon Mar 30 2020 02:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36221 * 126.40582 * 2 1 4 4 N 1.32749 * 108.61826 * 180.02562 * 3 2 1 5 5 C 1.32984 * 109.22956 * 359.76076 * 4 3 2 6 6 C 1.39991 * 125.96311 * 180.23290 * 5 4 3 7 7 H 1.08004 * 119.99792 * 180.17423 * 6 5 4 8 8 C 1.40237 * 120.00217 * 0.17228 * 6 5 4 9 9 N 1.30689 * 120.00211 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 120.00101 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46928 * 59.99554 * 10 8 6 12 12 H 1.48502 * 109.47114 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.46932 * 299.99740 * 10 8 6 14 14 N 1.36419 * 126.40332 * 180.02562 * 2 1 3 15 15 C 1.46506 * 126.55328 * 359.93191 * 14 2 1 16 16 F 1.39900 * 109.46822 * 90.00352 * 15 14 2 17 17 F 1.39897 * 109.46905 * 209.99796 * 15 14 2 18 18 F 1.39895 * 109.47093 * 330.00038 * 15 14 2 19 19 H 1.08990 * 109.47302 * 269.96704 * 1 2 3 20 20 H 1.08998 * 109.46924 * 29.96864 * 1 2 3 21 21 H 1.09002 * 109.46641 * 149.96098 * 1 2 3 22 22 H 1.07996 * 125.68368 * 0.04499 * 3 2 1 23 23 H 0.96996 * 120.00402 * 180.02562 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3155 1.0964 0.0000 4 7 3.5795 0.6908 -0.0006 5 6 3.6130 -0.6386 0.0043 6 6 4.7664 -1.4319 0.0100 7 1 4.6813 -2.5086 0.0108 8 6 6.0324 -0.8287 0.0145 9 7 6.1355 0.4741 0.0130 10 14 7.5715 -1.8873 0.0214 11 1 7.5873 -2.7455 -1.1904 12 1 8.7728 -1.0143 0.0248 13 1 7.5778 -2.7437 1.2345 14 7 2.3166 -1.0980 -0.0005 15 6 1.8872 -2.4987 0.0003 16 9 1.7494 -2.9448 -1.3185 17 9 2.8433 -3.2791 0.6590 18 9 0.6591 -2.6096 0.6609 19 1 -0.3633 -0.0006 1.0276 20 1 -0.3633 0.8903 -0.5133 21 1 -0.3633 -0.8897 -0.5145 22 1 1.9834 2.1240 0.0007 23 1 7.0111 0.8914 0.0157 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261237950.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:54 Heat of formation + Delta-G solvation = -88.750683 kcal Electronic energy + Delta-G solvation = -15402.537886 eV Core-core repulsion = 12223.250330 eV Total energy + Delta-G solvation = -3179.287557 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.052 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.61182 -47.31076 -47.19528 -40.10200 -33.67792 -31.90753 -30.71063 -27.48023 -24.74804 -23.72948 -20.43984 -19.99124 -18.20929 -18.13278 -17.17149 -16.12351 -15.00624 -14.23849 -14.08102 -13.87783 -13.72441 -13.60710 -13.46659 -13.39649 -12.98158 -12.48287 -12.21469 -12.00568 -11.37246 -11.34080 -11.20437 -10.52889 -10.31440 -9.38260 -8.71870 -8.06997 -7.21013 -6.61537 -4.51871 2.62390 2.89886 3.08575 3.11366 3.26281 3.79817 3.97263 4.48321 4.52986 4.89151 5.46245 5.71950 5.96267 6.22433 6.27086 6.42306 6.87768 7.04250 7.25367 7.66938 7.95214 8.27573 8.67949 8.88596 9.90752 10.29665 Molecular weight = 220.05amu Principal moments of inertia in cm(-1) A = 0.034830 B = 0.012792 C = 0.009954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.708177 B = 2188.413438 C = 2812.323794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C -0.161 4.161 3 C 0.028 3.972 4 N -0.514 5.514 5 C 0.396 3.604 6 C -0.453 4.453 7 H 0.091 0.909 8 C 0.081 3.919 9 N -0.729 5.729 10 Si 0.918 3.082 11 H -0.264 1.264 12 H -0.276 1.276 13 H -0.264 1.264 14 N -0.553 5.553 15 C 0.673 3.327 16 F -0.176 7.176 17 F -0.155 7.155 18 F -0.171 7.171 19 H 0.049 0.951 20 H 0.062 0.938 21 H 0.043 0.957 22 H 0.145 0.855 23 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.898 -4.157 0.071 6.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.268 4.268 3 C -0.123 4.123 4 N -0.235 5.235 5 C 0.160 3.840 6 C -0.491 4.491 7 H 0.109 0.891 8 C -0.145 4.145 9 N -0.352 5.352 10 Si 0.742 3.258 11 H -0.188 1.188 12 H -0.201 1.201 13 H -0.188 1.188 14 N -0.261 5.261 15 C 0.534 3.466 16 F -0.158 7.158 17 F -0.136 7.136 18 F -0.153 7.153 19 H 0.067 0.933 20 H 0.081 0.919 21 H 0.062 0.938 22 H 0.162 0.838 23 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.170 -3.525 0.065 5.461 hybrid contribution -0.193 -1.210 0.000 1.226 sum -4.363 -4.735 0.065 6.440 Atomic orbital electron populations 1.19854 0.89344 1.00985 1.00440 1.20385 0.92577 0.86392 1.27397 1.22030 0.90744 0.96219 1.03300 1.71406 1.16683 1.06085 1.29358 1.20481 0.80405 0.89095 0.94014 1.18549 0.87895 0.93974 1.48697 0.89139 1.25787 1.00270 0.95232 0.93259 1.69988 1.25820 1.09837 1.29587 0.86212 0.79494 0.80132 0.79985 1.18849 1.20063 1.18810 1.46523 1.09934 1.00972 1.68695 1.17978 0.73798 0.80475 0.74336 1.93231 1.95548 1.89824 1.37176 1.93220 1.64180 1.75249 1.80984 1.93175 1.44860 1.96013 1.81259 0.93268 0.91879 0.93794 0.83768 0.91090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.86 9.31 36.01 0.34 -0.52 14 2 C -0.16 -3.73 6.87 -81.28 -0.56 -4.29 14 3 C 0.03 0.68 11.77 -17.88 -0.21 0.47 14 4 N -0.51 -14.64 9.40 -12.73 -0.12 -14.76 14 5 C 0.40 11.04 7.35 -155.61 -1.14 9.90 14 6 C -0.45 -12.25 8.70 -38.17 -0.33 -12.58 14 7 H 0.09 2.31 5.99 -52.48 -0.31 1.99 14 8 C 0.08 2.07 5.50 -17.29 -0.10 1.98 14 9 N -0.73 -19.72 11.90 55.56 0.66 -19.06 14 10 Si 0.92 18.78 29.56 -169.99 -5.03 13.75 14 11 H -0.26 -5.30 7.11 56.52 0.40 -4.90 14 12 H -0.28 -5.45 7.11 56.52 0.40 -5.04 14 13 H -0.26 -5.30 7.11 56.52 0.40 -4.90 14 14 N -0.55 -13.68 3.12 -116.32 -0.36 -14.04 14 15 C 0.67 14.44 3.81 59.85 0.23 14.67 14 16 F -0.18 -3.62 17.51 2.25 0.04 -3.58 14 17 F -0.15 -3.30 14.83 2.25 0.03 -3.27 14 18 F -0.17 -3.28 15.25 2.25 0.03 -3.25 14 19 H 0.05 0.82 8.14 -51.93 -0.42 0.40 14 20 H 0.06 0.98 8.14 -51.93 -0.42 0.56 14 21 H 0.04 0.76 7.16 -51.93 -0.37 0.39 14 22 H 0.14 3.04 8.06 -52.49 -0.42 2.62 14 23 H 0.28 6.79 8.29 -40.82 -0.34 6.45 14 LS Contribution 221.99 15.07 3.35 3.35 Total: -1.00 -29.44 221.99 -4.26 -33.70 By element: Atomic # 1 Polarization: -1.36 SS G_CDS: -1.09 Total: -2.44 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: -1.78 Total: 9.62 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: 0.18 Total: -47.87 kcal Atomic # 9 Polarization: -10.20 SS G_CDS: 0.11 Total: -10.10 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -29.44 -4.26 -33.70 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261237950.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.055 kcal (2) G-P(sol) polarization free energy of solvation -29.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds