Wall clock time and date at job start Mon Mar 30 2020 02:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36221 * 126.40582 * 2 1 4 4 N 1.32749 * 108.61826 * 180.02562 * 3 2 1 5 5 C 1.32984 * 109.22956 * 359.76076 * 4 3 2 6 6 C 1.39991 * 125.96311 * 180.23290 * 5 4 3 7 7 H 1.08004 * 119.99792 * 180.17423 * 6 5 4 8 8 C 1.40237 * 120.00217 * 0.17228 * 6 5 4 9 9 N 1.30689 * 120.00211 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 120.00101 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46928 * 59.99554 * 10 8 6 12 12 H 1.48502 * 109.47114 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.46932 * 299.99740 * 10 8 6 14 14 N 1.36419 * 126.40332 * 180.02562 * 2 1 3 15 15 C 1.46506 * 126.55328 * 359.93191 * 14 2 1 16 16 F 1.39900 * 109.46822 * 90.00352 * 15 14 2 17 17 F 1.39897 * 109.46905 * 209.99796 * 15 14 2 18 18 F 1.39895 * 109.47093 * 330.00038 * 15 14 2 19 19 H 1.08990 * 109.47302 * 269.96704 * 1 2 3 20 20 H 1.08998 * 109.46924 * 29.96864 * 1 2 3 21 21 H 1.09002 * 109.46641 * 149.96098 * 1 2 3 22 22 H 1.07996 * 125.68368 * 0.04499 * 3 2 1 23 23 H 0.96996 * 120.00402 * 180.02562 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3155 1.0964 0.0000 4 7 3.5795 0.6908 -0.0006 5 6 3.6130 -0.6386 0.0043 6 6 4.7664 -1.4319 0.0100 7 1 4.6813 -2.5086 0.0108 8 6 6.0324 -0.8287 0.0145 9 7 6.1355 0.4741 0.0130 10 14 7.5715 -1.8873 0.0214 11 1 7.5873 -2.7455 -1.1904 12 1 8.7728 -1.0143 0.0248 13 1 7.5778 -2.7437 1.2345 14 7 2.3166 -1.0980 -0.0005 15 6 1.8872 -2.4987 0.0003 16 9 1.7494 -2.9448 -1.3185 17 9 2.8433 -3.2791 0.6590 18 9 0.6591 -2.6096 0.6609 19 1 -0.3633 -0.0006 1.0276 20 1 -0.3633 0.8903 -0.5133 21 1 -0.3633 -0.8897 -0.5145 22 1 1.9834 2.1240 0.0007 23 1 7.0111 0.8914 0.0157 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261237950.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:54 Heat of formation + Delta-G solvation = -106.746251 kcal Electronic energy + Delta-G solvation = -15403.318233 eV Core-core repulsion = 12223.250330 eV Total energy + Delta-G solvation = -3180.067903 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.052 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -51.30432 -48.97535 -48.89632 -42.01032 -35.57984 -33.82156 -32.43941 -29.32219 -26.51451 -25.55975 -22.36204 -21.79462 -19.93808 -19.89682 -18.91898 -18.06074 -16.78412 -15.94353 -15.76375 -15.57888 -15.42241 -15.36183 -15.14406 -15.07846 -14.75335 -14.28227 -13.88966 -13.54905 -13.09087 -12.91629 -12.83047 -12.42270 -11.97666 -11.21411 -10.68607 -10.03589 -9.13047 -8.50011 -6.49801 0.86027 1.11941 1.42531 1.56279 1.58991 2.05207 2.25890 2.57636 2.80728 3.13775 3.50331 4.03810 4.47896 4.48722 4.84536 4.97739 5.00244 5.19258 5.38882 5.79409 6.04756 6.40399 6.75521 6.91266 7.97471 8.44393 Molecular weight = 220.05amu Principal moments of inertia in cm(-1) A = 0.034830 B = 0.012792 C = 0.009954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.708177 B = 2188.413438 C = 2812.323794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C -0.145 4.145 3 C -0.009 4.009 4 N -0.555 5.555 5 C 0.364 3.636 6 C -0.484 4.484 7 H 0.097 0.903 8 C 0.035 3.965 9 N -0.773 5.773 10 Si 0.996 3.004 11 H -0.257 1.257 12 H -0.265 1.265 13 H -0.257 1.257 14 N -0.564 5.564 15 C 0.677 3.323 16 F -0.169 7.169 17 F -0.155 7.155 18 F -0.154 7.154 19 H 0.067 0.933 20 H 0.090 0.910 21 H 0.052 0.948 22 H 0.170 0.830 23 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.490 -5.037 0.087 7.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.251 4.251 3 C -0.157 4.157 4 N -0.277 5.277 5 C 0.126 3.874 6 C -0.523 4.523 7 H 0.115 0.885 8 C -0.187 4.187 9 N -0.397 5.397 10 Si 0.815 3.185 11 H -0.181 1.181 12 H -0.189 1.189 13 H -0.181 1.181 14 N -0.272 5.272 15 C 0.539 3.461 16 F -0.151 7.151 17 F -0.136 7.136 18 F -0.135 7.135 19 H 0.085 0.915 20 H 0.109 0.891 21 H 0.071 0.929 22 H 0.187 0.813 23 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.812 -4.404 0.081 6.523 hybrid contribution -0.187 -0.907 -0.002 0.926 sum -4.998 -5.311 0.079 7.294 Atomic orbital electron populations 1.20020 0.85385 1.02817 1.02124 1.21281 0.94879 0.85510 1.23456 1.22548 0.90061 0.98103 1.04982 1.71293 1.19007 1.07065 1.30374 1.20785 0.81756 0.89477 0.95399 1.18942 0.88791 0.94406 1.50146 0.88542 1.26825 1.03304 0.96507 0.92046 1.70089 1.27048 1.11825 1.30774 0.85065 0.75000 0.78210 0.80262 1.18093 1.18934 1.18064 1.46756 1.09612 1.02660 1.68133 1.17797 0.74303 0.79334 0.74637 1.93241 1.95533 1.89564 1.36782 1.93218 1.64398 1.75010 1.81004 1.93210 1.43580 1.95827 1.80926 0.91466 0.89081 0.92947 0.81278 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.48 9.31 71.24 0.66 -0.81 14 2 C -0.14 -6.48 6.87 41.38 0.28 -6.20 14 3 C -0.01 -0.42 11.77 84.08 0.99 0.57 14 4 N -0.56 -32.22 9.40 -194.18 -1.83 -34.05 14 5 C 0.36 20.55 7.35 133.59 0.98 21.53 14 6 C -0.48 -26.54 8.70 23.18 0.20 -26.34 14 7 H 0.10 4.94 5.99 -2.91 -0.02 4.92 14 8 C 0.04 1.81 5.50 85.35 0.47 2.28 14 9 N -0.77 -42.70 11.90 21.88 0.26 -42.44 14 10 Si 1.00 38.33 29.56 68.60 2.03 40.36 14 11 H -0.26 -9.50 7.11 99.48 0.71 -8.79 14 12 H -0.27 -9.62 7.11 99.48 0.71 -8.91 14 13 H -0.26 -9.49 7.11 99.48 0.71 -8.78 14 14 N -0.56 -27.51 3.12 -521.94 -1.63 -29.14 14 15 C 0.68 28.08 3.81 127.77 0.49 28.57 14 16 F -0.17 -6.70 17.51 44.97 0.79 -5.91 14 17 F -0.15 -6.46 14.83 44.97 0.67 -5.79 14 18 F -0.15 -5.51 15.25 44.97 0.69 -4.83 14 19 H 0.07 1.99 8.14 -2.39 -0.02 1.97 14 20 H 0.09 2.47 8.14 -2.39 -0.02 2.45 14 21 H 0.05 1.62 7.16 -2.39 -0.02 1.60 14 22 H 0.17 7.03 8.06 -2.91 -0.02 7.01 14 23 H 0.28 14.14 8.29 -92.71 -0.77 13.37 14 Total: -1.00 -63.67 221.99 6.31 -57.36 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: 1.26 Total: 4.84 kcal Atomic # 6 Polarization: 15.53 SS G_CDS: 4.08 Total: 19.60 kcal Atomic # 7 Polarization: -102.44 SS G_CDS: -3.19 Total: -105.63 kcal Atomic # 9 Polarization: -18.67 SS G_CDS: 2.14 Total: -16.53 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.36 kcal Total: -63.67 6.31 -57.36 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261237950.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.387 kcal (2) G-P(sol) polarization free energy of solvation -63.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds