Wall clock time and date at job start Mon Mar 30 2020 02:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47065 * 2 1 4 4 C 1.50700 * 109.47280 * 239.99644 * 2 1 3 5 5 H 1.07995 * 120.00002 * 274.67878 * 4 2 1 6 6 C 1.37875 * 119.99672 * 94.95453 * 4 2 1 7 7 N 1.31516 * 119.99998 * 183.77982 * 6 4 2 8 8 Si 1.86800 * 120.00034 * 3.77646 * 6 4 2 9 9 H 1.48504 * 109.47128 * 85.07606 * 8 6 4 10 10 H 1.48509 * 109.47159 * 205.07063 * 8 6 4 11 11 H 1.48498 * 109.47485 * 325.07191 * 8 6 4 12 12 C 1.50703 * 109.47118 * 119.99618 * 2 1 3 13 13 C 1.34981 * 125.89255 * 85.02859 * 12 2 1 14 14 C 1.41030 * 107.46693 * 179.97438 * 13 12 2 15 15 C 1.34317 * 107.33317 * 359.97438 * 14 13 12 16 16 N 1.36002 * 125.89185 * 264.71934 * 12 2 1 17 17 C 1.46739 * 127.14910 * 0.12174 * 16 12 2 18 18 C 1.53211 * 108.78158 * 162.60785 * 17 16 12 19 19 C 1.53127 * 109.61125 * 50.89419 * 18 17 16 20 20 C 1.50975 * 127.44723 * 180.12781 * 15 14 13 21 21 H 1.08996 * 109.47467 * 299.75038 * 1 2 3 22 22 H 1.08996 * 109.47405 * 59.75701 * 1 2 3 23 23 H 1.09007 * 109.46657 * 179.75984 * 1 2 3 24 24 H 0.96998 * 119.99871 * 180.02562 * 7 6 4 25 25 H 1.07998 * 126.26589 * 0.02562 * 13 12 2 26 26 H 1.08004 * 126.33302 * 180.02562 * 14 13 12 27 27 H 1.09006 * 109.58722 * 282.39902 * 17 16 12 28 28 H 1.09001 * 109.58775 * 42.67949 * 17 16 12 29 29 H 1.09004 * 109.45044 * 170.93510 * 18 17 16 30 30 H 1.08995 * 109.45160 * 290.85138 * 18 17 16 31 31 H 1.09002 * 109.51571 * 49.95225 * 19 18 17 32 32 H 1.09008 * 109.51337 * 170.10496 * 19 18 17 33 33 H 1.08993 * 109.72551 * 283.83409 * 20 15 14 34 34 H 1.08994 * 109.72837 * 44.51502 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1405 -1.7850 -1.2272 6 6 2.3594 0.0119 -2.3583 7 7 2.7267 -0.6128 -3.4558 8 14 2.2807 1.8780 -2.3276 9 1 3.5542 2.4184 -1.7876 10 1 2.0723 2.3874 -3.7070 11 1 1.1532 2.3119 -1.4641 12 6 2.0324 -0.7103 1.2305 13 6 2.2068 -2.0426 1.3594 14 6 2.6898 -2.2822 2.6626 15 6 2.7918 -1.0920 3.2766 16 7 2.3937 -0.1191 2.4008 17 6 2.3705 1.3144 2.7136 18 6 2.4339 1.4885 4.2344 19 6 3.6010 0.6723 4.7970 20 6 3.2657 -0.8231 4.6847 21 1 -0.3634 0.5099 0.8922 22 1 -0.3634 0.5176 -0.8877 23 1 -0.3633 -1.0278 -0.0043 24 1 2.9571 -0.1045 -4.2491 25 1 2.0129 -2.7885 0.6028 26 1 2.9334 -3.2446 3.0879 27 1 3.2298 1.8027 2.2537 28 1 1.4508 1.7570 2.3311 29 1 2.5794 2.5420 4.4734 30 1 1.5010 1.1416 4.6787 31 1 4.5057 0.8919 4.2299 32 1 3.7551 0.9315 5.8445 33 1 2.4818 -1.0890 5.3937 34 1 4.1620 -1.4085 4.8893 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261243117.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:07 Heat of formation + Delta-G solvation = 9.276017 kcal Electronic energy + Delta-G solvation = -15070.863893 eV Core-core repulsion = 12774.775933 eV Total energy + Delta-G solvation = -2296.087960 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.33886 -37.16024 -35.81050 -33.81102 -32.91475 -29.85784 -27.88267 -27.20641 -24.93393 -23.11145 -22.12537 -20.83928 -19.17145 -18.72085 -17.36839 -16.44747 -16.09881 -15.03499 -15.03325 -14.94846 -14.66846 -14.58407 -14.16837 -13.87465 -13.53412 -13.10788 -12.91545 -12.72242 -12.60810 -12.20458 -11.91951 -11.84963 -11.79007 -11.58006 -11.52178 -11.10814 -10.75447 -9.32254 -8.50568 -8.28338 -6.32680 1.30639 1.32073 1.43480 1.52613 2.20604 2.26632 2.33012 3.07459 3.71241 3.83913 3.90197 4.09228 4.24818 4.38783 4.44133 4.50030 4.68905 4.79765 4.85318 4.89678 4.91960 4.93501 4.96767 5.08159 5.11993 5.16721 5.35884 5.46053 5.53601 5.66808 5.74503 6.25770 6.35273 6.60367 6.71221 6.81910 7.30729 8.88638 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.035228 B = 0.009526 C = 0.008472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.623022 B = 2938.552909 C = 3304.132097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.075 3.925 3 H 0.036 0.964 4 C -0.504 4.504 5 H 0.034 0.966 6 C 0.009 3.991 7 N -0.950 5.950 8 Si 0.940 3.060 9 H -0.269 1.269 10 H -0.284 1.284 11 H -0.239 1.239 12 C 0.042 3.958 13 C -0.227 4.227 14 C -0.222 4.222 15 C 0.001 3.999 16 N -0.451 5.451 17 C 0.090 3.910 18 C -0.122 4.122 19 C -0.121 4.121 20 C -0.044 4.044 21 H 0.049 0.951 22 H 0.046 0.954 23 H 0.040 0.960 24 H 0.266 0.734 25 H 0.102 0.898 26 H 0.142 0.858 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.486 7.101 18.395 19.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.056 3.944 3 H 0.054 0.946 4 C -0.542 4.542 5 H 0.053 0.947 6 C -0.188 4.188 7 N -0.590 5.590 8 Si 0.763 3.237 9 H -0.194 1.194 10 H -0.210 1.210 11 H -0.162 1.162 12 C -0.070 4.070 13 C -0.251 4.251 14 C -0.246 4.246 15 C -0.110 4.110 16 N -0.129 5.129 17 C -0.031 4.031 18 C -0.160 4.160 19 C -0.158 4.158 20 C -0.081 4.081 21 H 0.068 0.932 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.075 0.925 25 H 0.120 0.880 26 H 0.160 0.840 27 H 0.090 0.910 28 H 0.103 0.897 29 H 0.128 0.872 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.122 0.878 33 H 0.111 0.889 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.446 7.509 18.286 19.773 hybrid contribution 0.131 0.027 -1.209 1.217 sum -0.315 7.535 17.077 18.668 Atomic orbital electron populations 1.21826 0.96094 1.00565 0.99676 1.17673 0.93612 0.94411 0.88745 0.94571 1.21112 1.42814 0.94175 0.96135 0.94725 1.25944 0.94357 1.03766 0.94690 1.70051 1.48044 1.37963 1.02971 0.85846 0.80048 0.79869 0.77901 1.19444 1.21014 1.16207 1.20717 1.04984 0.93222 0.88077 1.20629 1.11545 0.94920 0.97996 1.20650 1.11231 0.97764 0.94995 1.20828 1.07730 0.87437 0.95002 1.44328 1.50993 1.07033 1.10535 1.22193 1.03118 0.78336 0.99465 1.21854 1.00309 1.03026 0.90770 1.21695 0.97550 0.93548 1.03011 1.20439 1.01677 0.97719 0.88292 0.93248 0.93495 0.94086 0.92513 0.87969 0.84024 0.90954 0.89707 0.87158 0.90626 0.92405 0.87800 0.88946 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.34 9.16 71.98 0.66 -4.68 16 2 C 0.08 3.67 2.16 -12.28 -0.03 3.64 16 3 H 0.04 1.70 5.00 -2.39 -0.01 1.68 16 4 C -0.50 -29.85 8.57 25.60 0.22 -29.63 16 5 H 0.03 2.31 6.90 -2.91 -0.02 2.29 16 6 C 0.01 0.53 5.47 84.65 0.46 0.99 16 7 N -0.95 -60.66 13.96 21.45 0.30 -60.36 16 8 Si 0.94 44.14 26.97 68.60 1.85 45.98 16 9 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 10 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 11 H -0.24 -10.09 6.85 99.48 0.68 -9.41 16 12 C 0.04 1.93 5.84 41.16 0.24 2.17 16 13 C -0.23 -10.72 9.98 22.21 0.22 -10.50 16 14 C -0.22 -8.66 10.80 22.06 0.24 -8.42 16 15 C 0.00 0.02 6.55 40.97 0.27 0.29 16 16 N -0.45 -16.81 3.15 -494.47 -1.56 -18.37 16 17 C 0.09 2.51 6.43 86.40 0.56 3.06 16 18 C -0.12 -2.26 5.91 30.71 0.18 -2.08 16 19 C -0.12 -2.14 5.98 30.86 0.18 -1.95 16 20 C -0.04 -0.96 6.29 30.16 0.19 -0.77 16 21 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 22 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 24 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 25 H 0.10 5.24 7.25 -2.91 -0.02 5.22 16 26 H 0.14 4.76 8.06 -2.91 -0.02 4.73 16 27 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 28 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.08 1.37 8.11 -2.39 -0.02 1.35 16 31 H 0.06 1.16 8.12 -2.39 -0.02 1.14 16 32 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -71.67 273.30 5.02 -66.65 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 1.04 Total: 13.98 kcal Atomic # 6 Polarization: -51.27 SS G_CDS: 3.39 Total: -47.88 kcal Atomic # 7 Polarization: -77.48 SS G_CDS: -1.26 Total: -78.74 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.85 Total: 45.98 kcal Total: -71.67 5.02 -66.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261243117.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.927 kcal (2) G-P(sol) polarization free energy of solvation -71.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds