Wall clock time and date at job start Mon Mar 30 2020 02:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.34511 * 126.57797 * 269.68501 * 10 9 7 12 12 O 1.34307 * 108.42058 * 179.89845 * 11 10 9 13 13 C 1.34299 * 109.47362 * 0.37473 * 12 11 10 14 14 C 1.50701 * 125.78747 * 179.79515 * 13 12 11 15 15 F 1.39908 * 109.46940 * 269.97431 * 14 13 12 16 16 F 1.39901 * 109.47481 * 29.97185 * 14 13 12 17 17 F 1.39899 * 109.47319 * 149.97929 * 14 13 12 18 18 C 1.34513 * 108.42371 * 359.77161 * 13 12 11 19 19 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 21 21 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 22 22 H 1.08002 * 125.79517 * 0.03738 * 11 10 9 23 23 H 1.07994 * 126.58110 * 180.02562 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.7466 -4.2578 -1.0796 12 8 3.5793 -5.2249 -0.6611 13 6 3.5998 -5.2480 0.6815 14 6 4.4073 -6.1922 1.5345 15 9 3.6542 -7.3411 1.7994 16 9 5.5780 -6.5481 0.8562 17 9 4.7392 -5.5640 2.7396 18 6 2.7777 -4.2851 1.1359 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5567 0.8903 21 1 0.6246 -2.5571 -0.8897 22 1 2.5302 -4.0125 -2.1089 23 1 2.5752 -4.0466 2.1695 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261251717.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:04 Heat of formation + Delta-G solvation = -145.301291 kcal Electronic energy + Delta-G solvation = -14485.096914 eV Core-core repulsion = 11271.064387 eV Total energy + Delta-G solvation = -3214.032526 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 220.045 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -50.12503 -47.66465 -47.61429 -42.23397 -34.21835 -32.38503 -30.86453 -27.67041 -25.44207 -23.35307 -21.14781 -20.17774 -18.53164 -18.24436 -17.64281 -16.42660 -15.99596 -15.53025 -14.57165 -14.46286 -14.44502 -14.05726 -13.78362 -13.77529 -13.25786 -12.68127 -12.45349 -12.24673 -11.93006 -11.16433 -10.77877 -10.56558 -9.98089 -9.71219 -9.11592 -8.50537 -8.14296 -6.12472 -4.16630 1.72197 2.26830 3.08542 3.24173 3.25039 3.33436 3.38766 3.95765 4.38251 4.41185 4.48905 5.22203 5.36046 5.56736 6.02486 6.31896 6.36656 6.93830 7.25317 7.43644 7.64711 7.83553 8.22120 8.88601 9.48268 10.97582 Molecular weight = 220.05amu Principal moments of inertia in cm(-1) A = 0.048751 B = 0.006809 C = 0.006592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.214952 B = 4111.490779 C = 4246.696448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.517 4.517 8 H 0.058 0.942 9 C 0.074 3.926 10 C -0.132 4.132 11 C -0.027 4.027 12 O -0.163 6.163 13 C -0.154 4.154 14 C 0.564 3.436 15 F -0.172 7.172 16 F -0.174 7.174 17 F -0.162 7.162 18 C -0.113 4.113 19 H 0.263 0.737 20 H 0.033 0.967 21 H 0.032 0.968 22 H 0.212 0.788 23 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.388 -10.348 1.433 12.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.555 4.555 8 H 0.076 0.924 9 C 0.037 3.963 10 C -0.134 4.134 11 C -0.094 4.094 12 O -0.060 6.060 13 C -0.204 4.204 14 C 0.509 3.491 15 F -0.153 7.153 16 F -0.155 7.155 17 F -0.144 7.144 18 C -0.133 4.133 19 H 0.072 0.928 20 H 0.051 0.949 21 H 0.051 0.949 22 H 0.228 0.772 23 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.429 -10.455 1.284 12.340 hybrid contribution 0.448 0.988 0.205 1.104 sum 6.877 -9.467 1.488 11.795 Atomic orbital electron populations 1.69956 1.06048 1.26885 1.50308 1.25013 0.94896 0.99356 0.95038 0.86466 0.80123 0.83355 0.77701 1.19660 1.20880 1.20866 1.21121 0.93149 0.89922 1.51293 0.92385 1.17832 0.91653 0.88123 0.98656 1.21384 1.01919 0.99635 0.90426 1.24192 0.94338 0.90280 1.00589 1.83917 1.54550 1.48527 1.19023 1.21511 1.09624 1.05521 0.83757 1.16768 0.76844 0.77864 0.77613 1.93241 1.76217 1.51617 1.94242 1.93213 1.50020 1.92469 1.79828 1.93229 1.92524 1.82384 1.46235 1.21725 0.96017 0.94065 1.01511 0.92777 0.94901 0.94943 0.77200 0.82672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.69 13.29 55.43 0.74 -24.95 14 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 14 3 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 14 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 14 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 14 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 14 7 C -0.52 -14.03 9.09 -34.44 -0.31 -14.34 14 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 14 9 C 0.07 1.83 5.49 -29.03 -0.16 1.67 14 10 C -0.13 -2.75 5.35 -104.74 -0.56 -3.31 14 11 C -0.03 -0.48 12.01 29.41 0.35 -0.13 14 12 O -0.16 -2.90 10.64 5.71 0.06 -2.84 14 13 C -0.15 -2.68 6.65 -35.62 -0.24 -2.92 14 14 C 0.56 8.48 3.54 36.01 0.13 8.60 14 15 F -0.17 -2.48 17.30 2.25 0.04 -2.44 14 16 F -0.17 -2.59 17.29 2.25 0.04 -2.55 14 17 F -0.16 -2.37 17.01 2.25 0.04 -2.34 14 18 C -0.11 -2.13 10.42 -39.70 -0.41 -2.54 14 19 H 0.26 7.12 8.31 -40.82 -0.34 6.78 14 20 H 0.03 0.85 8.14 -51.93 -0.42 0.43 14 21 H 0.03 0.82 8.14 -51.93 -0.42 0.40 14 22 H 0.21 3.10 8.06 -52.49 -0.42 2.67 14 23 H 0.16 2.67 8.06 -52.49 -0.42 2.25 14 LS Contribution 232.84 15.07 3.51 3.51 Total: -1.00 -28.47 232.84 -3.13 -31.60 By element: Atomic # 1 Polarization: -3.35 SS G_CDS: -1.23 Total: -4.58 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -1.30 Total: -11.45 kcal Atomic # 7 Polarization: -25.69 SS G_CDS: 0.74 Total: -24.95 kcal Atomic # 8 Polarization: -2.90 SS G_CDS: 0.06 Total: -2.84 kcal Atomic # 9 Polarization: -7.45 SS G_CDS: 0.12 Total: -7.33 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -28.47 -3.13 -31.60 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261251717.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.697 kcal (2) G-P(sol) polarization free energy of solvation -28.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds