Wall clock time and date at job start Mon Mar 30 2020 02:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47477 * 2 1 4 4 C 1.50700 * 109.47546 * 119.99681 * 2 1 3 5 5 H 1.07998 * 119.99920 * 119.99390 * 4 2 1 6 6 C 1.37872 * 120.00166 * 299.99988 * 4 2 1 7 7 N 1.31512 * 120.00418 * 179.97438 * 6 4 2 8 8 Si 1.86805 * 120.00034 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99575 * 8 6 4 10 10 H 1.48499 * 109.47442 * 210.00010 * 8 6 4 11 11 H 1.48498 * 109.46733 * 329.99686 * 8 6 4 12 12 C 1.50700 * 109.47167 * 239.99953 * 2 1 3 13 13 C 1.41039 * 126.26821 * 119.99839 * 12 2 1 14 14 C 1.34325 * 107.33160 * 179.97438 * 13 12 2 15 15 N 1.36825 * 108.37492 * 0.05037 * 14 13 12 16 16 C 1.34984 * 126.26403 * 300.20244 * 12 2 1 17 17 C 1.46754 * 124.24037 * 179.87796 * 15 14 13 18 18 C 1.53202 * 108.78675 * 342.68566 * 17 15 14 19 19 C 1.53124 * 109.62543 * 50.86207 * 18 17 15 20 20 C 1.50969 * 127.44875 * 180.09474 * 14 13 12 21 21 H 1.09007 * 109.46433 * 300.00274 * 1 2 3 22 22 H 1.08996 * 109.46924 * 59.99587 * 1 2 3 23 23 H 1.08993 * 109.47178 * 180.02562 * 1 2 3 24 24 H 0.97003 * 120.00242 * 180.02562 * 7 6 4 25 25 H 1.07996 * 126.33775 * 359.92441 * 13 12 2 26 26 H 1.07995 * 125.89160 * 359.81708 * 16 12 2 27 27 H 1.09004 * 109.58346 * 102.45326 * 17 15 14 28 28 H 1.08997 * 109.58891 * 222.88001 * 17 15 14 29 29 H 1.08996 * 109.44073 * 290.81834 * 18 17 15 30 30 H 1.09000 * 109.42364 * 170.89725 * 18 17 15 31 31 H 1.09007 * 109.51234 * 170.11928 * 19 18 17 32 32 H 1.09000 * 109.51615 * 49.96510 * 19 18 17 33 33 H 1.08990 * 109.72709 * 283.80520 * 20 14 13 34 34 H 1.09003 * 109.72227 * 44.48292 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6994 -0.2393 2.4827 7 7 2.1374 -0.8594 3.5565 8 14 0.6260 1.2800 2.6541 9 1 -0.8019 0.8746 2.6993 10 1 0.9773 1.9956 3.9070 11 1 0.8493 2.1774 1.4923 12 6 2.0323 -0.7104 -1.2304 13 6 2.8464 -0.1561 -2.2400 14 6 3.0650 -1.1185 -3.1512 15 7 2.4149 -2.2521 -2.7457 16 6 1.7823 -1.9927 -1.5701 17 6 2.4199 -3.5175 -3.4889 18 6 2.8680 -3.2427 -4.9279 19 6 4.1701 -2.4370 -4.9161 20 6 3.8798 -1.0153 -4.4179 21 1 -0.3632 0.5139 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 1.9028 -0.5281 4.4376 25 1 3.2237 0.8552 -2.2745 26 1 1.1867 -2.6931 -1.0036 27 1 3.1124 -4.2152 -3.0178 28 1 1.4163 -3.9426 -3.4935 29 1 2.0951 -2.6756 -5.4465 30 1 3.0315 -4.1890 -5.4436 31 1 4.5799 -2.3926 -5.9253 32 1 4.8888 -2.9162 -4.2513 33 1 3.3169 -0.4682 -5.1740 34 1 4.8174 -0.4992 -4.2111 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261258959.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:03 Heat of formation + Delta-G solvation = 37.196463 kcal Electronic energy + Delta-G solvation = -14783.075651 eV Core-core repulsion = 12488.198413 eV Total energy + Delta-G solvation = -2294.877238 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.87866 -36.14650 -33.90423 -32.22835 -31.19829 -28.02307 -26.83889 -24.87259 -23.77514 -21.77781 -21.08305 -18.63757 -17.75838 -16.42043 -16.13241 -15.23399 -14.61319 -14.09503 -13.86794 -13.38281 -13.03063 -12.89054 -12.68147 -12.36282 -12.04620 -11.53719 -11.40833 -11.06426 -10.92194 -10.84483 -10.77660 -10.56810 -10.07834 -9.81130 -9.20070 -8.91857 -8.42342 -7.64043 -7.02794 -5.93065 -3.89821 2.93657 3.37585 3.47823 3.50031 3.51728 3.92843 4.54115 4.60357 4.69066 4.79377 5.12143 5.34796 5.40622 5.42971 5.57676 5.65898 5.78504 5.85591 5.89750 6.08782 6.17488 6.31664 6.35433 6.56707 6.73165 6.82569 7.08804 7.11722 7.30058 7.63296 7.89611 7.93723 8.10981 8.17480 8.73341 9.13926 9.70376 11.20477 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.053285 B = 0.007135 C = 0.006957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.347058 B = 3923.622034 C = 4023.750639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.069 3.931 3 H 0.030 0.970 4 C -0.497 4.497 5 H 0.073 0.927 6 C 0.065 3.935 7 N -0.907 5.907 8 Si 0.889 3.111 9 H -0.281 1.281 10 H -0.300 1.300 11 H -0.266 1.266 12 C -0.107 4.107 13 C -0.194 4.194 14 C -0.006 4.006 15 N -0.455 5.455 16 C -0.016 4.016 17 C 0.109 3.891 18 C -0.131 4.131 19 C -0.123 4.123 20 C -0.045 4.045 21 H 0.035 0.965 22 H 0.027 0.973 23 H 0.048 0.952 24 H 0.261 0.739 25 H 0.125 0.875 26 H 0.155 0.845 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.796 -3.245 -16.996 17.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.049 3.951 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.091 0.909 6 C -0.135 4.135 7 N -0.547 5.547 8 Si 0.720 3.280 9 H -0.208 1.208 10 H -0.228 1.228 11 H -0.191 1.191 12 C -0.113 4.113 13 C -0.220 4.220 14 C -0.116 4.116 15 N -0.134 5.134 16 C -0.143 4.143 17 C -0.013 4.013 18 C -0.168 4.168 19 C -0.161 4.161 20 C -0.083 4.083 21 H 0.054 0.946 22 H 0.047 0.953 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.143 0.857 26 H 0.173 0.827 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.782 -3.600 -16.972 17.367 hybrid contribution -0.630 0.658 0.419 1.003 sum 0.153 -2.942 -16.553 16.813 Atomic orbital electron populations 1.22116 0.99164 1.00317 0.98020 1.17701 0.90942 0.95538 0.90880 0.95202 1.21092 1.31037 1.13108 0.88284 0.90933 1.25026 0.95966 0.96664 0.95887 1.69907 1.46330 1.40636 0.97787 0.86825 0.80487 0.84042 0.76650 1.20844 1.22817 1.19118 1.19745 1.01031 0.93571 0.96954 1.20460 1.06387 0.98640 0.96479 1.20060 1.04575 0.87566 0.99402 1.43936 1.41066 1.09272 1.19148 1.21413 1.05442 0.98376 0.89081 1.21772 1.02203 0.85301 0.92017 1.21814 0.98534 1.01130 0.95372 1.21613 0.97057 0.95974 1.01413 1.20192 0.98591 0.96576 0.92946 0.94642 0.95343 0.93273 0.92913 0.85703 0.82737 0.90942 0.90221 0.91096 0.90357 0.91318 0.91537 0.91114 0.90378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.55 37.16 0.32 -2.90 16 2 C 0.07 1.74 2.26 -92.93 -0.21 1.53 16 3 H 0.03 0.78 7.18 -51.93 -0.37 0.40 16 4 C -0.50 -14.58 8.99 -34.44 -0.31 -14.89 16 5 H 0.07 2.32 7.96 -52.49 -0.42 1.91 16 6 C 0.06 1.93 5.45 -17.82 -0.10 1.83 16 7 N -0.91 -28.65 13.96 55.43 0.77 -27.87 16 8 Si 0.89 22.88 24.37 -169.99 -4.14 18.74 16 9 H -0.28 -7.03 6.87 56.52 0.39 -6.64 16 10 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 11 H -0.27 -6.60 6.53 56.52 0.37 -6.23 16 12 C -0.11 -2.44 4.82 -104.72 -0.51 -2.94 16 13 C -0.19 -3.95 10.74 -39.90 -0.43 -4.38 16 14 C -0.01 -0.10 6.55 -81.61 -0.53 -0.64 16 15 N -0.46 -7.90 3.15 -112.21 -0.35 -8.25 16 16 C -0.02 -0.33 10.91 -16.86 -0.18 -0.51 16 17 C 0.11 1.36 6.96 -3.80 -0.03 1.34 16 18 C -0.13 -1.30 5.92 -26.56 -0.16 -1.45 16 19 C -0.12 -1.27 5.96 -26.45 -0.16 -1.43 16 20 C -0.05 -0.57 6.28 -27.53 -0.17 -0.75 16 21 H 0.04 0.84 3.27 -51.93 -0.17 0.67 16 22 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.05 1.09 8.01 -51.93 -0.42 0.67 16 24 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 25 H 0.13 2.37 8.06 -52.49 -0.42 1.94 16 26 H 0.16 3.10 8.06 -52.49 -0.42 2.67 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 269.45 15.07 4.06 4.06 Total: -1.00 -32.82 269.45 -7.33 -40.15 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -5.21 Total: -1.65 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: -2.47 Total: -25.18 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.42 Total: -36.12 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.14 Total: 18.74 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -32.82 -7.33 -40.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261258959.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.347 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds