Wall clock time and date at job start Mon Mar 30 2020 02:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 H 1.07993 * 120.00472 * 240.00439 * 4 2 1 6 6 C 1.37882 * 119.99554 * 60.00544 * 4 2 1 7 7 N 1.31515 * 120.00420 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99716 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47454 * 59.99745 * 8 6 4 10 10 H 1.48503 * 109.46926 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47302 * 299.99567 * 8 6 4 12 12 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 13 13 C 1.41040 * 126.26905 * 239.99887 * 12 2 1 14 14 C 1.34322 * 107.33554 * 179.97438 * 13 12 2 15 15 N 1.36820 * 108.37415 * 0.05730 * 14 13 12 16 16 C 1.34983 * 126.26840 * 59.68607 * 12 2 1 17 17 C 1.46755 * 124.24312 * 179.85866 * 15 14 13 18 18 C 1.53204 * 108.77492 * 342.66774 * 17 15 14 19 19 C 1.53127 * 109.61723 * 50.89929 * 18 17 15 20 20 C 1.50960 * 127.44865 * 180.11507 * 14 13 12 21 21 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 22 22 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 24 24 H 0.97001 * 120.00306 * 180.02562 * 7 6 4 25 25 H 1.08002 * 126.32818 * 359.95358 * 13 12 2 26 26 H 1.08001 * 125.88891 * 359.95260 * 16 12 2 27 27 H 1.08999 * 109.58223 * 102.45568 * 17 15 14 28 28 H 1.08998 * 109.58540 * 222.88142 * 17 15 14 29 29 H 1.08998 * 109.45067 * 170.93860 * 18 17 15 30 30 H 1.08999 * 109.45225 * 290.85301 * 18 17 15 31 31 H 1.08999 * 109.51661 * 49.94934 * 19 18 17 32 32 H 1.09003 * 109.51938 * 170.10541 * 19 18 17 33 33 H 1.09008 * 109.72848 * 283.85113 * 20 14 13 34 34 H 1.08997 * 109.72765 * 44.52214 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.8282 -2.5199 -4.0081 10 1 1.8271 -0.4199 -5.2204 11 1 3.8076 -1.1190 -4.0077 12 6 2.0323 -0.7104 1.2305 13 6 2.8465 -0.1561 2.2400 14 6 3.0640 -1.1181 3.1519 15 7 2.4154 -2.2522 2.7456 16 6 1.7806 -1.9920 1.5713 17 6 2.4244 -3.5190 3.4863 18 6 3.5800 -3.4940 4.4918 19 6 3.5156 -2.2058 5.3172 20 6 3.8749 -1.0135 4.4209 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.7083 1.1609 -3.4845 25 1 3.2253 0.8547 2.2734 26 1 1.1805 -2.6909 1.0075 27 1 1.4801 -3.6382 4.0177 28 1 2.5623 -4.3475 2.7916 29 1 3.5018 -4.3547 5.1561 30 1 4.5283 -3.5347 3.9560 31 1 2.5074 -2.0752 5.7102 32 1 4.2241 -2.2668 6.1433 33 1 4.9380 -1.0401 4.1816 34 1 3.6360 -0.0822 4.9344 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261258963.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:04 Heat of formation + Delta-G solvation = 29.423112 kcal Electronic energy + Delta-G solvation = -14741.522439 eV Core-core repulsion = 12446.308123 eV Total energy + Delta-G solvation = -2295.214316 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.78235 -36.03215 -33.79281 -32.17532 -30.69033 -27.62190 -26.73248 -24.92684 -23.64295 -21.66224 -20.97265 -18.56833 -17.72448 -16.23750 -15.88382 -15.10237 -14.49770 -14.06173 -13.78111 -13.36339 -12.97125 -12.79800 -12.31154 -12.16769 -11.46259 -11.21581 -11.13327 -11.03213 -10.82458 -10.78395 -10.70955 -10.59996 -10.12881 -9.81858 -9.26297 -8.77525 -8.19770 -7.53812 -6.92374 -5.83235 -3.88055 3.01349 3.39961 3.44007 3.46988 3.57278 4.05376 4.57430 4.64198 4.72711 4.82951 5.16749 5.36186 5.46344 5.47326 5.61144 5.69984 5.82684 5.89594 5.94122 6.15449 6.21618 6.46506 6.69184 7.02385 7.08760 7.28386 7.41195 7.51003 7.85228 7.92670 8.06942 8.21520 8.33004 8.37974 8.67853 9.15271 9.75036 11.22245 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.045281 B = 0.007093 C = 0.006742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.206520 B = 3946.382924 C = 4151.836209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.101 3.899 3 H 0.029 0.971 4 C -0.497 4.497 5 H 0.053 0.947 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.889 3.111 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.279 1.279 12 C -0.108 4.108 13 C -0.195 4.195 14 C -0.008 4.008 15 N -0.457 5.457 16 C -0.025 4.025 17 C 0.110 3.890 18 C -0.131 4.131 19 C -0.122 4.122 20 C -0.045 4.045 21 H 0.080 0.920 22 H 0.022 0.978 23 H 0.005 0.995 24 H 0.258 0.742 25 H 0.124 0.876 26 H 0.152 0.848 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.664 -6.959 13.871 15.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.082 3.918 3 H 0.047 0.953 4 C -0.535 4.535 5 H 0.071 0.929 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.205 1.205 12 C -0.114 4.114 13 C -0.221 4.221 14 C -0.118 4.118 15 N -0.137 5.137 16 C -0.152 4.152 17 C -0.012 4.012 18 C -0.169 4.169 19 C -0.159 4.159 20 C -0.083 4.083 21 H 0.099 0.901 22 H 0.041 0.959 23 H 0.025 0.975 24 H 0.068 0.932 25 H 0.142 0.858 26 H 0.170 0.830 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.562 -7.195 13.890 16.043 hybrid contribution 0.290 -0.573 -1.004 1.192 sum 3.852 -7.768 12.886 15.532 Atomic orbital electron populations 1.21740 0.98431 0.98654 0.99699 1.17248 0.91905 0.94803 0.87821 0.95280 1.21191 1.30217 1.11921 0.90200 0.92889 1.24970 0.95396 0.95125 0.98746 1.69887 1.37251 1.23148 1.23093 0.86713 0.79166 0.79709 0.82684 1.20513 1.21416 1.20453 1.20259 1.00007 0.93484 0.97639 1.20503 1.06375 0.98586 0.96619 1.20044 1.04880 0.87626 0.99265 1.43929 1.41373 1.09032 1.19323 1.21396 1.05821 0.98720 0.89258 1.21738 0.99229 0.85668 0.94566 1.21814 0.98676 0.98714 0.97704 1.21607 1.02049 0.94464 0.97822 1.20188 0.98310 0.98349 0.91455 0.90136 0.95884 0.97549 0.93180 0.85806 0.83034 0.91221 0.90301 0.90444 0.91021 0.91694 0.91377 0.91098 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 8.85 37.16 0.33 -2.95 16 2 C 0.10 2.73 2.67 -92.92 -0.25 2.48 16 3 H 0.03 0.85 8.13 -51.93 -0.42 0.42 16 4 C -0.50 -14.31 8.41 -34.44 -0.29 -14.60 16 5 H 0.05 1.53 7.72 -52.49 -0.41 1.12 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -26.45 11.32 55.43 0.63 -25.83 16 8 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 12 C -0.11 -2.56 4.82 -104.72 -0.50 -3.07 16 13 C -0.20 -4.15 10.74 -39.90 -0.43 -4.58 16 14 C -0.01 -0.15 6.55 -81.62 -0.53 -0.68 16 15 N -0.46 -8.18 3.15 -112.21 -0.35 -8.54 16 16 C -0.03 -0.54 10.91 -16.86 -0.18 -0.72 16 17 C 0.11 1.42 6.96 -3.80 -0.03 1.39 16 18 C -0.13 -1.37 5.92 -26.56 -0.16 -1.53 16 19 C -0.12 -1.29 5.96 -26.44 -0.16 -1.45 16 20 C -0.05 -0.60 6.28 -27.53 -0.17 -0.77 16 21 H 0.08 2.24 6.07 -51.93 -0.32 1.93 16 22 H 0.02 0.56 8.00 -51.93 -0.42 0.14 16 23 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 24 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 26 H 0.15 3.12 8.06 -52.49 -0.42 2.70 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 31 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 276.26 15.07 4.16 4.16 Total: -1.00 -31.35 276.26 -8.39 -39.74 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -5.34 Total: -1.63 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: -2.47 Total: -24.92 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.27 Total: -34.36 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.35 -8.39 -39.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261258963.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.165 kcal (2) G-P(sol) polarization free energy of solvation -31.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds