Wall clock time and date at job start Mon Mar 30 2020 02:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 H 1.07993 * 120.00472 * 240.00439 * 4 2 1 6 6 C 1.37882 * 119.99554 * 60.00544 * 4 2 1 7 7 N 1.31515 * 120.00420 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99716 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47454 * 59.99745 * 8 6 4 10 10 H 1.48503 * 109.46926 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47302 * 299.99567 * 8 6 4 12 12 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 13 13 C 1.41040 * 126.26905 * 239.99887 * 12 2 1 14 14 C 1.34322 * 107.33554 * 179.97438 * 13 12 2 15 15 N 1.36820 * 108.37415 * 0.05730 * 14 13 12 16 16 C 1.34983 * 126.26840 * 59.68607 * 12 2 1 17 17 C 1.46755 * 124.24312 * 179.85866 * 15 14 13 18 18 C 1.53204 * 108.77492 * 342.66774 * 17 15 14 19 19 C 1.53127 * 109.61723 * 50.89929 * 18 17 15 20 20 C 1.50960 * 127.44865 * 180.11507 * 14 13 12 21 21 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 22 22 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 24 24 H 0.97001 * 120.00306 * 180.02562 * 7 6 4 25 25 H 1.08002 * 126.32818 * 359.95358 * 13 12 2 26 26 H 1.08001 * 125.88891 * 359.95260 * 16 12 2 27 27 H 1.08999 * 109.58223 * 102.45568 * 17 15 14 28 28 H 1.08998 * 109.58540 * 222.88142 * 17 15 14 29 29 H 1.08998 * 109.45067 * 170.93860 * 18 17 15 30 30 H 1.08999 * 109.45225 * 290.85301 * 18 17 15 31 31 H 1.08999 * 109.51661 * 49.94934 * 19 18 17 32 32 H 1.09003 * 109.51938 * 170.10541 * 19 18 17 33 33 H 1.09008 * 109.72848 * 283.85113 * 20 14 13 34 34 H 1.08997 * 109.72765 * 44.52214 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.8282 -2.5199 -4.0081 10 1 1.8271 -0.4199 -5.2204 11 1 3.8076 -1.1190 -4.0077 12 6 2.0323 -0.7104 1.2305 13 6 2.8465 -0.1561 2.2400 14 6 3.0640 -1.1181 3.1519 15 7 2.4154 -2.2522 2.7456 16 6 1.7806 -1.9920 1.5713 17 6 2.4244 -3.5190 3.4863 18 6 3.5800 -3.4940 4.4918 19 6 3.5156 -2.2058 5.3172 20 6 3.8749 -1.0135 4.4209 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.7083 1.1609 -3.4845 25 1 3.2253 0.8547 2.2734 26 1 1.1805 -2.6909 1.0075 27 1 1.4801 -3.6382 4.0177 28 1 2.5623 -4.3475 2.7916 29 1 3.5018 -4.3547 5.1561 30 1 4.5283 -3.5347 3.9560 31 1 2.5074 -2.0752 5.7102 32 1 4.2241 -2.2668 6.1433 33 1 4.9380 -1.0401 4.1816 34 1 3.6360 -0.0822 4.9344 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261258963.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:04 Heat of formation + Delta-G solvation = 12.358525 kcal Electronic energy + Delta-G solvation = -14742.262415 eV Core-core repulsion = 12446.308123 eV Total energy + Delta-G solvation = -2295.954292 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 219.132 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.23467 -37.35035 -35.64971 -33.48371 -32.62951 -29.11862 -28.07425 -27.14769 -24.88007 -23.35177 -22.26178 -20.10148 -19.25397 -17.97207 -17.62954 -16.52702 -16.25092 -15.06843 -14.94109 -14.73634 -14.52779 -14.27709 -14.03472 -13.75925 -13.27807 -13.02063 -12.80035 -12.78508 -12.32687 -12.13139 -12.04110 -11.88123 -11.70381 -11.59369 -11.23259 -10.92393 -10.42008 -9.09628 -8.56078 -8.02386 -6.17155 1.40694 1.43348 1.50439 1.52927 2.25184 2.30482 2.50943 3.22202 3.73330 3.86643 3.93382 4.08351 4.42079 4.46811 4.54699 4.67424 4.83204 4.86945 4.91941 4.96049 4.97610 5.07037 5.10643 5.22358 5.35028 5.36367 5.52444 5.57783 5.68344 6.03675 6.12482 6.37470 6.42949 6.63680 6.80865 6.92408 7.49948 9.00964 Molecular weight = 219.13amu Principal moments of inertia in cm(-1) A = 0.045281 B = 0.007093 C = 0.006742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.206520 B = 3946.382924 C = 4151.836209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.102 3.898 3 H -0.011 1.011 4 C -0.515 4.515 5 H 0.046 0.954 6 C 0.009 3.991 7 N -0.921 5.921 8 Si 0.956 3.044 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.275 1.275 12 C -0.147 4.147 13 C -0.240 4.240 14 C 0.016 3.984 15 N -0.451 5.451 16 C -0.033 4.033 17 C 0.096 3.904 18 C -0.127 4.127 19 C -0.118 4.118 20 C -0.048 4.048 21 H 0.056 0.944 22 H 0.028 0.972 23 H 0.017 0.983 24 H 0.261 0.739 25 H 0.120 0.880 26 H 0.153 0.847 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.646 -9.143 15.656 18.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.083 3.917 3 H 0.007 0.993 4 C -0.554 4.554 5 H 0.064 0.936 6 C -0.189 4.189 7 N -0.561 5.561 8 Si 0.781 3.219 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.201 1.201 12 C -0.153 4.153 13 C -0.265 4.265 14 C -0.096 4.096 15 N -0.129 5.129 16 C -0.161 4.161 17 C -0.024 4.024 18 C -0.164 4.164 19 C -0.155 4.155 20 C -0.086 4.086 21 H 0.075 0.925 22 H 0.047 0.953 23 H 0.036 0.964 24 H 0.070 0.930 25 H 0.138 0.862 26 H 0.171 0.829 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.132 0.868 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.101 0.899 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.544 -9.404 15.699 18.855 hybrid contribution -0.005 0.110 -1.485 1.489 sum 4.538 -9.294 14.213 17.578 Atomic orbital electron populations 1.21555 0.97955 0.98667 0.98985 1.17079 0.92361 0.92879 0.89424 0.99284 1.21426 1.30509 1.11979 0.91457 0.93611 1.25781 0.95461 0.95835 1.01815 1.70027 1.37962 1.24284 1.23874 0.85649 0.78588 0.78856 0.78762 1.19476 1.20629 1.20059 1.20078 1.02506 0.95037 0.97656 1.20614 1.08281 0.99712 0.97903 1.20683 1.02885 0.86436 0.99637 1.44239 1.39628 1.10743 1.18253 1.21285 1.06270 0.97787 0.90750 1.22227 1.01574 0.83370 0.95188 1.21865 0.96983 1.00174 0.97394 1.21630 1.02982 0.92898 0.97992 1.20414 0.98006 1.00606 0.89566 0.92539 0.95315 0.96353 0.93027 0.86240 0.82946 0.89433 0.89268 0.86789 0.91574 0.91677 0.88175 0.89865 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -6.10 8.85 71.98 0.64 -5.46 16 2 C 0.10 5.76 2.67 -12.28 -0.03 5.73 16 3 H -0.01 -0.69 8.13 -2.39 -0.02 -0.71 16 4 C -0.52 -30.72 8.41 25.60 0.22 -30.50 16 5 H 0.05 2.72 7.72 -2.91 -0.02 2.70 16 6 C 0.01 0.51 5.30 84.66 0.45 0.96 16 7 N -0.92 -56.10 11.32 21.45 0.24 -55.86 16 8 Si 0.96 45.74 29.54 68.60 2.03 47.77 16 9 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 C -0.15 -7.22 4.82 -19.93 -0.10 -7.31 16 13 C -0.24 -10.52 10.74 22.06 0.24 -10.28 16 14 C 0.02 0.56 6.55 40.97 0.27 0.82 16 15 N -0.45 -15.48 3.15 -508.92 -1.60 -17.09 16 16 C -0.03 -1.40 10.91 83.30 0.91 -0.49 16 17 C 0.10 2.17 6.96 86.40 0.60 2.77 16 18 C -0.13 -2.06 5.92 30.70 0.18 -1.88 16 19 C -0.12 -1.95 5.96 30.78 0.18 -1.76 16 20 C -0.05 -1.13 6.28 30.07 0.19 -0.94 16 21 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 22 H 0.03 1.44 8.00 -2.39 -0.02 1.42 16 23 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 25 H 0.12 5.10 8.06 -2.91 -0.02 5.08 16 26 H 0.15 6.34 8.06 -2.91 -0.02 6.32 16 27 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.07 1.19 8.11 -2.39 -0.02 1.17 16 31 H 0.06 1.12 8.12 -2.39 -0.02 1.10 16 32 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -70.41 276.26 5.46 -64.95 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: 1.05 Total: 8.57 kcal Atomic # 6 Polarization: -52.09 SS G_CDS: 3.74 Total: -48.35 kcal Atomic # 7 Polarization: -71.58 SS G_CDS: -1.36 Total: -72.94 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -70.41 5.46 -64.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261258963.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.310 kcal (2) G-P(sol) polarization free energy of solvation -70.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds