Wall clock time and date at job start Mon Mar 30 2020 02:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86799 * 120.00336 * 2 1 4 4 H 1.48494 * 109.47553 * 240.00202 * 3 2 1 5 5 H 1.48501 * 109.47062 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47348 * 120.00032 * 3 2 1 7 7 C 1.39979 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99944 * 199.95117 * 7 2 1 9 9 C 1.40409 * 119.99814 * 19.93835 * 7 2 1 10 10 C 1.47879 * 120.42680 * 39.60272 * 9 7 2 11 11 C 1.40103 * 129.14838 * 359.97438 * 10 9 7 12 12 C 1.32629 * 115.79653 * 180.02562 * 11 10 9 13 13 S 1.75510 * 110.65846 * 0.02562 * 12 11 10 14 14 C 1.39559 * 118.13445 * 180.02562 * 10 9 7 15 15 C 1.39868 * 120.16975 * 359.72460 * 14 10 9 16 16 C 1.37783 * 121.56854 * 0.56628 * 15 14 10 17 17 C 1.38354 * 121.01548 * 359.42903 * 16 15 14 18 18 O 1.35718 * 120.01866 * 180.30445 * 17 16 15 19 19 H 0.97006 * 119.99777 * 359.97438 * 1 2 3 20 20 H 1.07995 * 122.09986 * 0.02562 * 11 10 9 21 21 H 1.08000 * 124.67319 * 179.97438 * 12 11 10 22 22 H 1.07997 * 119.21177 * 180.27187 * 15 14 10 23 23 H 1.08000 * 119.49204 * 179.71266 * 16 15 14 24 24 H 0.96698 * 114.00158 * 84.96597 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.0967 1.6964 -1.2124 5 1 1.2780 2.7464 0.0006 6 1 3.0968 1.6963 1.2125 7 6 2.0088 -1.2123 -0.0005 8 1 3.0401 -1.2404 0.3186 9 6 1.3698 -2.3916 -0.4157 10 6 0.4437 -2.3756 -1.5685 11 6 0.0632 -1.3008 -2.3826 12 6 -0.7942 -1.5870 -3.3531 13 16 -1.2128 -3.2913 -3.3268 14 6 -0.1656 -3.5750 -1.9398 15 6 0.1083 -4.7507 -1.2334 16 6 0.9672 -4.7615 -0.1561 17 6 1.6023 -3.6052 0.2608 18 8 2.4492 -3.6402 1.3208 19 1 -0.4850 0.8401 0.0004 20 1 0.4442 -0.3019 -2.2295 21 1 -1.1821 -0.8701 -4.0616 22 1 -0.3685 -5.6711 -1.5367 23 1 1.1510 -5.6877 0.3681 24 1 3.3527 -3.8996 1.0939 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261259816.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:58 Heat of formation + Delta-G solvation = -24.152951 kcal Electronic energy + Delta-G solvation = -12440.409350 eV Core-core repulsion = 10216.239822 eV Total energy + Delta-G solvation = -2224.169529 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 220.030 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.14768 -37.87705 -35.67947 -34.81785 -31.50294 -29.35659 -27.01040 -24.19115 -22.98199 -21.13032 -19.67445 -18.40680 -17.62633 -17.15860 -16.38939 -15.83186 -15.51528 -14.72183 -14.46828 -14.10580 -13.63004 -13.40622 -12.99802 -12.76824 -12.75695 -12.27108 -12.04349 -11.71309 -11.36919 -11.09870 -10.72154 -9.91559 -8.97192 -8.84753 -8.28976 -6.37983 0.12170 0.73258 0.97212 1.32673 1.37262 1.45995 1.49432 1.83568 2.16542 2.62981 3.34459 3.82488 4.26230 4.47685 4.50716 4.85186 4.99205 5.14423 5.18651 5.34446 5.45904 5.80231 5.86003 5.88232 6.16682 6.31023 6.67986 6.74669 7.38331 8.22425 Molecular weight = 220.03amu Principal moments of inertia in cm(-1) A = 0.025967 B = 0.014545 C = 0.009768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.018158 B = 1924.599440 C = 2865.760769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.044 3.956 3 Si 0.974 3.026 4 H -0.255 1.255 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.476 4.476 8 H 0.086 0.914 9 C 0.113 3.887 10 C -0.150 4.150 11 C -0.060 4.060 12 C -0.257 4.257 13 S 0.050 5.950 14 C -0.120 4.120 15 C -0.211 4.211 16 C -0.081 4.081 17 C -0.056 4.056 18 O -0.497 6.497 19 H 0.293 0.707 20 H 0.120 0.880 21 H 0.178 0.822 22 H 0.124 0.876 23 H 0.133 0.867 24 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.168 -0.819 -4.060 4.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.174 4.174 3 Si 0.794 3.206 4 H -0.179 1.179 5 H -0.190 1.190 6 H -0.184 1.184 7 C -0.504 4.504 8 H 0.104 0.896 9 C 0.108 3.892 10 C -0.157 4.157 11 C -0.089 4.089 12 C -0.389 4.389 13 S 0.311 5.689 14 C -0.235 4.235 15 C -0.235 4.235 16 C -0.102 4.102 17 C -0.104 4.104 18 O -0.305 6.305 19 H 0.104 0.896 20 H 0.137 0.863 21 H 0.195 0.805 22 H 0.142 0.858 23 H 0.151 0.849 24 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -0.539 -1.308 -4.663 4.873 hybrid contribution 1.523 1.421 0.848 2.249 sum 0.984 0.113 -3.815 3.942 Atomic orbital electron populations 1.69931 1.09084 1.31308 1.32356 1.26691 0.95291 1.04134 0.91291 0.85365 0.79108 0.75713 0.80377 1.17950 1.18990 1.18389 1.19453 0.99530 0.92410 1.38969 0.89589 1.19052 0.89102 0.93510 0.87544 1.19284 1.05430 0.92130 0.98869 1.19813 0.96933 0.98873 0.93277 1.25093 1.08114 0.98817 1.06914 1.83084 1.49782 1.05330 1.30722 1.22790 1.02091 0.97985 1.00644 1.19773 1.07534 0.95593 1.00622 1.20970 0.96753 0.97128 0.95336 1.18512 1.03864 0.93691 0.94284 1.84766 1.22904 1.91568 1.31284 0.89613 0.86263 0.80461 0.85843 0.84917 0.77208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.94 10.81 21.84 0.24 -40.71 14 2 C 0.04 2.14 3.86 85.26 0.33 2.47 14 3 Si 0.97 36.60 29.60 68.60 2.03 38.63 14 4 H -0.26 -9.30 7.11 99.48 0.71 -8.59 14 5 H -0.27 -9.44 7.11 99.48 0.71 -8.73 14 6 H -0.26 -9.57 7.11 99.48 0.71 -8.87 14 7 C -0.48 -24.90 8.43 23.22 0.20 -24.70 14 8 H 0.09 4.33 7.91 -2.91 -0.02 4.31 14 9 C 0.11 6.05 5.51 -19.55 -0.11 5.94 14 10 C -0.15 -7.69 5.51 -19.95 -0.11 -7.80 14 11 C -0.06 -2.82 8.26 21.56 0.18 -2.65 14 12 C -0.26 -10.36 11.11 66.66 0.74 -9.62 14 13 S 0.05 1.97 23.30 -56.49 -1.32 0.65 14 14 C -0.12 -5.65 6.49 22.98 0.15 -5.50 14 15 C -0.21 -9.24 10.01 22.56 0.23 -9.02 14 16 C -0.08 -3.55 9.89 22.19 0.22 -3.33 14 17 C -0.06 -2.76 6.72 22.95 0.15 -2.61 14 18 O -0.50 -22.25 12.93 -90.39 -1.17 -23.42 14 19 H 0.29 13.53 8.30 -92.70 -0.77 12.76 14 20 H 0.12 5.71 6.08 -2.91 -0.02 5.69 14 21 H 0.18 5.82 8.06 -2.91 -0.02 5.79 14 22 H 0.12 4.63 8.06 -2.91 -0.02 4.61 14 23 H 0.13 4.88 8.06 -2.91 -0.02 4.85 14 24 H 0.37 12.75 9.06 -74.06 -0.67 12.08 14 Total: -1.00 -60.07 229.26 2.33 -57.74 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: 0.57 Total: 23.91 kcal Atomic # 6 Polarization: -58.78 SS G_CDS: 1.97 Total: -56.81 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.24 Total: -40.71 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -1.17 Total: -23.42 kcal Atomic # 14 Polarization: 36.60 SS G_CDS: 2.03 Total: 38.63 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -1.32 Total: 0.65 kcal Total: -60.07 2.33 -57.74 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261259816.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.592 kcal (2) G-P(sol) polarization free energy of solvation -60.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds